Array 1 33752-35507 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORW01000018.1 Paenibacillus cookii strain J21TS3 sequence018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 33752 32 100.0 34 ................................ CATTCCCGGTCTTTCCCTTTACCAAACACTTGAA 33818 32 100.0 34 ................................ AAAGGCCTCTTTGGCCAATTCTTCAGCAGTTTTC 33884 32 100.0 35 ................................ GTCAAACGTAGGTATCCCGTCTCCATCAGCGTCCG 33951 32 100.0 36 ................................ AAGGACAGGGAGCCGTCAGAAAGATGAACGAGGCCC 34019 32 100.0 34 ................................ TGACCCTCGTATTCAAGGTAAAGCATCCGACTAC 34085 32 100.0 34 ................................ TTTCAGGTCACCAATAATCATTGGGGCAAGTTTG 34151 32 100.0 36 ................................ GAACTACCGCCGTCGGACTTTTTGGGAGCCGTAATG 34219 32 100.0 33 ................................ TGAGAATCCGGTTTGACGCGGCGCTCAGGCGAA 34284 32 100.0 35 ................................ AACGAAAAGCTGTTCGACGGTCTTCTGTTTGAGGC 34351 32 100.0 34 ................................ TGGCTGTTTGCGAAGGACGACGCAGTTAAACGTG 34417 32 100.0 34 ................................ AGAAACGGTTCGATCAGGCGCAAAGTGATTTCAT 34483 32 100.0 37 ................................ AAACTGTACAATATTGGCGACGATTACCCGGAATACG 34552 32 100.0 35 ................................ GTCTTCTTGATACACCTTAAGCGGTAGCTTCGCAA 34619 32 100.0 34 ................................ TTAGAACTCTATATCCTTGTCCACCGCTGTCGGG 34685 32 100.0 35 ................................ TTGACCGGCCTCCCGTTCCAAAACCTCGACGAGTC 34752 32 100.0 34 ................................ AATAAAATCCGGAGTAAAAGAGCGCGGATTCTAG 34818 32 100.0 35 ................................ ACGCAGCTGATATGAAGTTCGGAGCTTGTGCCCTT 34885 32 100.0 34 ................................ GGTTTATCGAAATCCTTAAGCGGCGGAACCGAAA 34951 32 100.0 34 ................................ AGGAATAGTCACTTTTGGTCTTTGTGTTATTTTA 35017 32 100.0 33 ................................ AACGAACGTATACAGGCAGGAAAAGAAATTGAG 35082 32 100.0 33 ................................ TATGCCTTCAAGTATTTTTTTGATTAATGTTTG 35147 32 100.0 34 ................................ TATCCGCGAGATTGGGCGTTTCCAAACGTTCGTC 35213 32 96.9 33 .A.............................. CTAAACCGGAAAGGGCGGTAAATATGAATAAAC 35278 32 100.0 33 ................................ GTGATCTGCTTAATGATGCTACCCGCCGGAGGT 35343 32 96.9 35 .........C...................... TATTGCAAAGACGGCATGCTTTATCCGGTTCTTCT 35410 32 100.0 34 ................................ TGGCCGAAATGAGCCGGACAAGCCCGGATCAGAA 35476 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 27 32 99.8 34 GTCGCATCCTGTGTGGATGCGTGGATTGAAAT # Left flank : AAAGAAGATCCGGCAATGAACTTTAAGGCGTGTTTGAAGCCGTTTTGATTCACCGTGGCCAAAATAACGATATTCGAGGGTCCCGGCGTGAAGGTGACGACGACGCAGTATAAGAGAAACGACATGATGTTCATGCTCCAAGGCTCCTTCAAGAATAAGTTTCTTGCATTATAGAGCCGAAAAGCCGATGGGGAATAGTACATTATTGCAAGGAGCTCAGGAGATAGATTTTTCGGGGATCAGCATGGTTTGGAGAAGGCACAATAGCTGTCCCGTACGGGTTATGCTAAGATAAAGAAGGAAGTGGTACCTTTTTACAGAGCGGTTTGGGAAGGTCTTTGGTGCGAATGTGAAGTGAACATGAATTCCCTGGGGGGTTCGCACCCGAAAAATCTTGATACCATTCCTTTTATGTAAATAAATGTTTATTCTATGGGGCAGGAAATGTTGTTTGATGAAATAAAGAGCCTATTTTGAGGGAAGTTCGCCTGAAAATCGGA # Right flank : TGCAGGCTGCAGCTCTCCATCCGGCCGCATTTTATACACGGGAAGATCACGCGAAACGGGTACGCTAAGAAATTTACGGAAGCCCCAACGGCCACGTACCTTGAGGTATATTTCTCCATATGCTAAGATAACAATAAAGAAGGGACCGTGCTGGAACACGATCCCTTGGTACAACAGCCGCTAAAAGAGCGGTCGGCTTCGGAGTTAAGTCGTGAAATAGACCGTTGTCCTCACCAAGGGCGGTCTATTTCTTTTTCATGTAGGTGAGCAGCGCCAAAATGAACATGCCGAACATGAACATTAAGGAGAGTGCGTCTTTTACCTCCATGGGCATCACCTCCCTTCCGGGAGATTAGCCGACCGCCCTTAAAGCCGAAATGTTGTACAATCCATATTATACCATAGGACTCTCTTCGGAGGGTCTTTTTCTATTAAGGTAGAGTCCTTATTTTGTCTCGTATTTCAAATCACGCCCGCTATGATTTACAATACATGGTATG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTGTGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 84667-84964 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORW01000018.1 Paenibacillus cookii strain J21TS3 sequence018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 84667 33 100.0 34 ................................. CAATAGCGCCATCCTCAAAAGCAATCGCGCTATT 84734 32 93.9 34 ................-...............A CTGTTGTGTTCATTGCTCACCAAACAGCTGACGA 84800 33 100.0 34 ................................. ACCGGGCGGTGGAATCGGTAAAGAGACTGAGCGC 84867 33 97.0 32 ................................C CGACAACCGACATGATCGTCGGCAGCATGGCG 84932 33 84.8 0 ..........AC.C......C...........A | ========== ====== ====== ====== ================================= ================================== ================== 5 33 95.1 34 GTCGCACCCTGTGTGGGTGCGTGGATTGAAATT # Left flank : TAATTGGGGTCATACATATGGACATGGATATTATGCGTTCGGTAGCCAAAGGGATTCCCATCGCGCTGGATCCCGAGCTGGAGAGCGGCAGACGCTTCCGGCATATTGCGCATAATGTCGTACAAAACGAGCAGGAGTACGTATTCGCGGAAAAAACCAAAAAGAAACGCAATCGCCTATTTTCTTTTTCCAAAGGGCTGCGGTGGGGACAAAGCAACTCGGTTTAAAGGGAAAAACGGGAGAATGCAAGCGTTCGTGATTTAAAAAATGGTGCATGGATTCATGGATTGATGGGGGGTTTTGGAGGATTTTTGTCGAAACCATAAAGTGAAAATATGGAAGAAATGAACTGGTGCGAACGTGTAGTGAACATGGATTTTCAGGGGGCTTCGCACCTGTAACATCTTGATTTTTTACAATAATGTAAATAAATTCAATTTATTGTTGGAGAATGGAGTGTCATAAGCCGCTTTTTCGGGCTTTTTGCTTGAAAAAGCGGT # Right flank : AGATTTATCAAATAAAACAAAATTTTACATACAAATTGGAAGGATATCTCAGATTCCTGTCGAATCTCGTTAAAATAAGGAGAATTGTCGCAGGTACATCGGACTACACGAGGGCTTGAACGACTCTATATTTCGAGGAGGAGACTGTTTGAATTATATAGCACATATTCGCGAAGCTGACAGGCAGCACCAAACAGTGGAGGAGCACTTATTAGGCGTACAAGCATTAGCAGAATCGTTCGGAAAGAAATTGGGAGTTTCGGTACATCGCCGGATTGGCAGGGATGCTGCACGATATGGGGAAATACACAGATGCTTTCAGGAATTATATTTTAGCAGCTGTAAACAACCCAAGCTTCCCGCCGAAAAGAGGAAGCGTCGATCATTCAACGGCAGGTGGGAAATTTCTGTATAACCTTTTTCGTGCTGGAGAAATCCACCCAATCAAAGGATTGTTGGCTGAAATCGTAGGTAATGCAATCATTTCACATCATTCTTAC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGTGTGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,1.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 93260-96222 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORW01000018.1 Paenibacillus cookii strain J21TS3 sequence018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 93260 31 100.0 37 ............................... AATAACAGGGTAATCCGGGGTTTCAACGCTGATATTG 93328 31 100.0 35 ............................... CTCCAGGTTCGGCAGCTTCAGCAAGTCACCAAGCG 93394 31 100.0 34 ............................... TGTGTTCTACCAATTCTCTACAGATATATCCGCG 93459 31 100.0 38 ............................... GCCAGATTGTGGTAATGTGTTTTCCCAGCAGAGTCGCG 93528 31 100.0 34 ............................... ATCAGGCAAATCTAGTGAGAAATCGTCTAACAAG 93593 31 100.0 34 ............................... AGTTCAACGGGCAGCGGACTTGCTTGCTGGCGCG 93658 31 100.0 34 ............................... TGCAAAACACTAATGCGCAGTTCGGCAAGATCCG 93723 31 100.0 37 ............................... AGAACCTTGGCTATTTACTTTTACGCTGGCCGGGAAG 93791 31 100.0 37 ............................... CTTGAAAGATTATAGATCCATATAGAGCGTTAAAAAG 93859 31 100.0 34 ............................... AGGCCATTTATCAAGAAATCCCATCCTACGCATG 93924 31 100.0 36 ............................... GATACTGATTACAGCAATAATCTTTGCAGCTCTACG 93991 31 100.0 37 ............................... ATGTCTCTCTCTCCTCATTTCACTTCGATGCCTTTCG 94059 31 100.0 36 ............................... ATCGGCAAGCAGCCTAAGACCTTGCGATCCGTCACG 94126 31 100.0 36 ............................... AGGTTTGCACACACACGTTTTGCTTCTTCAAGCGAG 94193 31 100.0 38 ............................... TATCTCTGCGCTCGCCATGTCGTGGGCGCTTTTTTATG 94262 31 100.0 35 ............................... TCTATTGGAGGTGAGATTGTGGCTAAGGTTATCCG 94328 31 100.0 34 ............................... TCCCCGGAATTTTGTTACTTCTTCCGGATCCATG 94393 31 100.0 34 ............................... TGCGTTGGCGTTATTATTCGACATCGAGTTGGAG 94458 31 100.0 34 ............................... CGGCAAACGACTTGGTTACTGTAGATATTATAAG 94523 31 100.0 35 ............................... AAAACGATGAGCAATACGAGAAGGCCCGCGTCGCG 94589 31 100.0 37 ............................... TTGTAGAGCGTCACAAAGATTGCGATGAGCCCGCCTG 94657 31 100.0 34 ............................... TTCTTCGGGAGCGATTGTTTTATATCCCATAAGG 94722 31 100.0 38 ............................... TGAATACGTGGACGATGGTCCGACGTCGATTTTCAGAG 94791 31 100.0 34 ............................... TCAACGTCCGTAAATACAGCACAAGGTTGTTTAG 94856 31 100.0 35 ............................... GAGAATGAGTTTTGCAGCCCTTCAGCCCACTCCTG 94922 31 100.0 38 ............................... CTCTCCTGGTCCCTGATCACTGCCGAAGCTGTGGTCAG 94991 31 100.0 34 ............................... CGTCTCCTCGTACGTTTTACCCACCTCGTACTGG 95056 31 100.0 34 ............................... GTTTAATTTTTATTTGTCGTCCCTTGCTGTTGAG 95121 31 100.0 36 ............................... TTGAACAATGAAGGTGAAAAAGGAGCGATTGAATGG 95188 31 100.0 34 ............................... ATATTGACGCCGACGACATGTTTGATGCACAAAG 95253 31 96.8 37 ..................T............ ATTGGATTTTGCTGATAGTCCAGAATGGATTGTAGAG 95321 31 100.0 37 ............................... ATACAAGGTAAAGCCCGCAGCCATCGCCCCTGCCAGG 95389 31 100.0 35 ............................... CTTGACTCTATCCATGACCCCTGCAGGGTCTAAGG 95455 31 100.0 35 ............................... CGAGAGATATTTTGCCTCTTGGGCCTCTTCGATCG 95521 31 100.0 38 ............................... GGCATGCTAGGAGGATTAAGATACTTGACTCCATCGCG 95590 31 100.0 35 ............................... TGCACGTCTCGTTGCTGCGGATTCCCGAAAAATAG 95656 31 100.0 36 ............................... CTCCGGTAAGGTTATGGATACCGGACGTTTCACACG 95723 31 100.0 36 ............................... AACATCTACAGGAGCGACTGTATTGAGTTACCAGTG 95790 31 100.0 33 ............................... GCCACCTGATTACAGACGGAAGAAGCGGCGAGG 95854 31 100.0 37 ............................... GAGACGAAGAGGATTCAGAAGGGGCAGCCGACGGACG 95922 31 100.0 36 ............................... AGCTGCCACTCGATTAGGGATCCCGAGAAGCCTTGG 95989 31 100.0 37 ............................... ATTAATAATTGCCGTGGCAGATGAAGCATCGCCATCG 96057 31 100.0 37 ............................... CGGGTGGTCTCCGGTTTATGAATACTCCGACGCAAAG 96125 31 100.0 37 ............................... TGGGTTATATATCTTTGCGGTCAGCACCTTCGGCAGG 96193 30 90.3 0 ..........C..A............-.... | ========== ====== ====== ====== =============================== ====================================== ================== 45 31 99.7 36 TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Left flank : CGAGGAGATCTGGACGAGTACCCTCCATTTCTATGGAAGTAGGTGTATCCTATGCTTGTTTTAGTTACTTACGATGTAAGTACAATGGATAGCGAAGGACAAAGAAGATTACGCAATGTATCAAAAATATGTCAAAACTACGGTCAGCGTGTCCAAAACTCTGTGTTTGAATGCATTGTTGACGCTACGCAGTTTGCTGTTCTAAAGATGAAGCTTGCAGATGAGATTGATCAAAATCAGGACAGCCTTCGGTTCTACCAACTCGGTAATAATTATAAAAACAAAGTTGAGCATATAGGCGTAAAAGGGTCGCTTGATCTTGAAGGCCCCCTTATTTTATAGTGCGAATGCCAAGTGAACATGATTTCTCAGGGAGGTTCGCACCAAAAAAACCTTAGATAAATCCCATTAATGTAAAATAATTGAAATTTATTTTTGTGAAAATTGATTTTTGATTATTAAAATACTGTTTTTACGGCATTTTGGCTTAAAAATCGGTG # Right flank : TGCCCTACCGACTGGGGCAATGCTAACTTCAATTTCGCACCCTATGTAATCCGATGGATTGGCTACGGTGATAAACCCTGTAGTTTAGCATCCTTAAGCTTTACCTTTGGTACGCAAAAAAGCTTGGAAACAAGCGAACAACCACCGTTAAGCAGGCTGAGGGCCTAAACGGTGGTAGTTTTCGCTTGAACAGCCAATATTATCGCGCCGTGGCATCCACAGCCTTTAACGTCCCGGGCCTTTACCGTTGCAGCGGTAGAGGCCCTTCTTCATGCCAACCTCCCATCAATACGGATTATTTTTAAGCAACTCCGACAAAAACGCGAGCGTTAGTCCCTGTCCCCAGCCTTGAATCCGCTTGTCGGGCACGCCTTTGTATCCGGCGGCGTCTTTCATGACGGCGGTGCCGGCGGACACGCCGGTGACGGTGCCGTCGCTTGTAATTTTGGACAGGATGCCGTCGATTGCTTTTTGCGTGTATTTGTTGTAAATCCGGCCTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCTATGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //