Array 1 95454-94266 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQAV01000053.1 Escherichia coli P0304816.12 gecP030481612.contig.52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95453 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 95392 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 95331 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 95270 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 95209 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 95148 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 95087 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 95026 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 94965 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 94904 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 94843 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 94782 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 94721 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 94660 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 94599 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 94538 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 94477 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 94416 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 94355 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94294 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122038-121155 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQAV01000053.1 Escherichia coli P0304816.12 gecP030481612.contig.52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122037 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 121976 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 121915 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 121854 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 121793 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 121732 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 121671 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 121610 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 121549 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 121488 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 121427 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 121366 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 121305 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 121244 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 121183 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //