Array 1 101651-99365 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDGU01000061.1 Chlorobaculum sp. 24CR NODE_72_length_114478_cov_28.881550, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 101650 28 100.0 33 ............................ CTGCCCAAGGACTGCCCATGGGAAGTTATTACC 101589 28 100.0 33 ............................ TGATACGAAATTATCGCGTTGTAGCATTGCCCA 101528 28 100.0 34 ............................ CCTGCAAATAGCGGGGGTGGGAAGGGGTTACCGA 101466 28 100.0 33 ............................ TAAATCTCCGGGGCCGCACCAAATGCCGGGCGG 101405 28 100.0 33 ............................ CAATGGAATACCCTATGAGTGACAAAAAAGAAA 101344 28 100.0 33 ............................ TTTCTCGGAGAAGGACAGACTTAGATCGGAAAG 101283 28 100.0 33 ............................ TCCACCGACGCTTTCCGACGGCATGACAGGCAA 101222 28 100.0 33 ............................ TAAAACCCACTCTGGTTAATGGTTCTATGGTTA 101161 28 100.0 33 ............................ TGCAGGAAACCGGGACTGGTCAGGCATGATAGA 101100 28 100.0 33 ............................ TTGGCCCACAAGCTTATACGAAATCACCACAAA 101039 28 100.0 33 ............................ ATTTTAAGACGTACACCCTCGCACTCTTAGACG 100978 28 100.0 33 ............................ TATCTAAAGGCGCAACGATGGCTTCATATATGA 100917 28 100.0 33 ............................ CACATTGCAGGCCGGTATTTTGAAGGCATGGAG 100856 28 100.0 33 ............................ TTTACGAGACCGTAGATATTGACGCGAGACCGG 100795 28 100.0 33 ............................ TGAAATCAACGCCGCGCCCGCGACCAGCGCGAC 100734 28 100.0 33 ............................ CACGGCATGAGCGTACCCCTTTCTACAAAAAAA 100673 28 100.0 33 ............................ TTGCGGGCTGGACGGTCACTGTCTGCGCAGACA 100612 28 100.0 33 ............................ TCTGCTCTTCCGCGTCTGGAAAACGCTCGCGCC 100551 28 100.0 33 ............................ CTGCGTCCGCCGAGAAAGCCGGGGCAGTGCAGG 100490 28 100.0 33 ............................ TGAGCAGCAGTCCATCTGCGTCCCCGCCGGGAA 100429 28 100.0 33 ............................ TCATATCGAGAATCTCATCGGCTGTCGCAGCGG 100368 28 100.0 33 ............................ CTTCCGAACAGGCTGTACTGCAACCGTGATATG 100307 28 100.0 33 ............................ TCTGCCGGAGGTAATCCCTCGACATGCCGTACA 100246 28 100.0 33 ............................ TGTGCTGTACCAAAGCAGCACGAAGGTACCGCA 100185 28 100.0 33 ............................ TAAAAGCTCTTGGCTCAAGGCGTCCGCCTGAAA 100124 28 100.0 33 ............................ TCCAGACCAAAGACTCTTCGCTGGCGTATTACA 100063 28 100.0 33 ............................ CGATTTACAGAGACCGGGAAGTGGTCAGACCCT 100002 28 100.0 33 ............................ TCTGGAACAGCTCCTCGAAAAAGTGCGAAAGAT 99941 28 100.0 33 ............................ TGCTTTCTTTCATCTCCAGCGACGACCGAGACC 99880 28 100.0 33 ............................ TTCCTTTTGCGATAGACATGGATTTTGATGACG 99819 28 100.0 33 ............................ CGAAGGAGAGGCTCTTCCCTCGACGCATGCCGA 99758 28 100.0 33 ............................ TGCCGTGGAGTCGGGGATTTACGAGGTGTGGCA 99697 28 100.0 33 ............................ TTGGAAAAGCGAGTGGCGAATGTATCGTCGCAA 99636 28 100.0 33 ............................ CGAGGGCATCATGAGCTGAATCACATCGTGCAC 99575 28 100.0 33 ............................ GGAGCTGAAGACTGCACAGATCAACCTGAAGGT 99514 28 100.0 33 ............................ TTAATACCACGCCAACGGCGAGAAACAGGCTGT 99453 28 100.0 33 ............................ TCCCAGACTCCACGGTATTCTGAGCAGGGCAAA 99392 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 38 28 100.0 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : GCACGTCTCCATCGATCTGGCTTTTGCCATGACTGCCGAGATGGCCGGATATTACGACCGGCACAAGATCGCCGCGGAGTTCCGGAAGCGCGTCATCGAAATCGACCTGCTGGGCAAGATCGGCCCTGACATCGAAACCATTCTGGGGAAAAAGCCATGCTCGTCGTAGTCGCCAATGACCTGCCCCCGGCGGTGAGAGGCCGGATGAAGCTCTGGTTCATCGAACCCAGGGCGAACGTTTTTGTGTCGGGCGTGCGGGACAGCCTGGCCAGAAAGGTGGTGGACTATCTGCACGAGCACTGCCCGCCGAAAAGCGGCCTGATGATTTTCAACAGCTCGAACACGTGCCCCGGCTACGAGATTTTCGGCTTGGGCGACACGCGCAAAGAGATCACGGAAATTTCGGGCCTGCCGCTCGTGATCGAAAAATCCGCCGCCTCGCCACCAGATAACCCAAACAGCTTGACGCCAGACGTCCCGAAACCCCAGTAAAACCCAGT # Right flank : TATTCCGTTCGTTTGAAACAAGCCTTTCCGTTAGCTAACTTGTATTTTATTGAAATACAAAACTCAAGCAGAGATGAATACATCAACGAAAAACAGTGAGCAAAAGGAGCAGATCAGCTTTCGTATTGCCTCCAGCGAGAAAAGGCGAATCGAGAGACTTGCCCAAGCTCTGAACCGGGACAAGACGTTCGTTTTCACGGAAGCAATCAGCCACTATCTGGATCTCAACGAATGGCAAATAGCAGGCATTCAGGAAGGGCTGGAAGACCTTGAACACGGACGAGTCGTTTCACAAGAAGAGATCGAGGACGAATGGAGGCGAAAGAGTGAAGGTTCAGTGGACTGAAAAAGCCCGGAAGCGTCTCCGTGAGATCGAGGCGTACCTCATCGCCGAAGAGTGTACGCCGATCAGAGCCAGCAAGCTCATTTTTTCGATTACCCGGAAAACCAGCAAACAGCTTGCAGACTATCCGCAATCAGGCCGGCCAGGAAGGGTAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6089-5459 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDGU01000038.1 Chlorobaculum sp. 24CR NODE_39_length_28135_cov_24.178923, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 6088 36 97.2 36 ..........T......................... TTGTTCCATTTTTCTACCCCGGAGAGCAAGATTGAA 6016 36 97.2 38 ..........T......................... TTAGAAACCTAGCGTAAAAAAATTGGACCAGTGCAGAA 5942 36 100.0 37 .................................... AAAGGACTCAGACCTAATTCTTTTTTATCTTTTGTGT 5869 36 100.0 40 .................................... TTCTTGAATGGCTTCGCGCTCTCAAAGGCCGCTACCGCTT 5793 36 97.2 34 ...................................C GCCGTACTCGCAAGATTTAAACCAATCATCCGGA 5723 36 100.0 36 .................................... CGCTAAATCGACCGCAATCGTGCCGTTTGGCCCAAC 5651 36 100.0 43 .................................... TTTTTTCGACGATCTGGTGCGTCCCGCGGAGATATCCGCGAAT 5572 36 100.0 42 .................................... TGAAGTCTCGAGTGTGCATCATTGCCCATGGAGTTGTCATAG 5494 36 83.3 0 .............................GTTTTT. | ========== ====== ====== ====== ==================================== =========================================== ================== 9 36 97.2 38 CTTTATAGCTAATTGCACTCGCAGAGGATTGAAACT # Left flank : GGTTCTGCGGAGGAACCATCTTGCGAACGTTCAGCGCGCCCTTTTCGCCGTTAGCAGCTTTGCCCGATACCTGACGCTCTTGAGATTCCGCTCCGGCCACGCTTGTTTGTACTAAATGGTGATGAAAAGAGTTACGGCGTCAAAAATAACACCATAAAACGAAACAACAGCACACTTGCCCGCAAAAAATCAGCGCGACGTGATCGCCGGAACCTGCACGGAGTACCGTCCGTACCGGTTAAAATGGTAAAACCGCAGCTCAGATTTTCGGATGGTGAAAAATGCCGGAAAAAGGCATTAACTGCTTTTGGAATAATGGGTAATGGGAAAAAGTCGGAATCATTGAGCTGCGGTGCTTGCATAAGTCATTGAAATTGCATAACCTACAGAGGCAGTTCAGTAGTACAATCAGACCATTGTCCCTTGGCATCGCTGATTTTTCCTCGAGCCTTCGATTTCGCTCCCGCAGCTCTTGCCAGTCAAGCGTTTCCGGGGGTACT # Right flank : AACAGTACGGTTGTTTTTCTGATTACAATTTTGACGAAAAATTGCTATGCCTGAATTGCTGACACAGAATAACCTGATGTTTCTGTTTGCGTTTACAGCAGGAATGGTTTCTATTATTCAGCTTCTTGAATACCTGGTTACAAAGAATATTCCGTGGCTATGGCGGATTGTTCGGCAGCTCTGGAGAAAAATCAGGCGGAGTATAGGCAAAAAAGCGGATGACGGTTATGTTCAGCGCCATATTCTCAACTTTTCAGGCCATCCTGTCTCGCCGGGCCAGCAGCAGGCAATCGAAAAGCACATGCACTGGGCCTCTTCCAGCGTGGTGGATGTGCGATTGGGGAATGTGCCCGAAGACAACAACTTTGCAGCCGCAATCACCAAAGCCATCGAACGCGCCGGACTCTCGCACGAGGAGTGGCAAACGATTCCATGCGTGGCAGTGCCCGCCGGTTATCCGGCAGTCTGGTCGGTCATCCTCGCCGAGCTGCACGGACGTC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATAGCTAATTGCACTCGCAGAGGATTGAAACT # Alternate repeat : CTTTATAGCTTATTGCACTCGCAGAGGATTGAAACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //