Array 1 8476-10684 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDSE01000032.1 Paenibacillus dakarensis strain FF9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================================================================== ================== 8476 32 100.0 33 ................................ TTTCAAGGCTTTCCCCTCCCCGTATGCGTCTTC 8541 32 100.0 36 ................................ CGACCATCAGAAGGTAAAAGAGATCGCCGAGATCCG 8609 32 100.0 36 ................................ TACATCCCCGGAATTGGTAAATGTCCCTCTATAAGC 8677 32 100.0 35 ................................ ATAGGGGACTCAGATAGTTTTTGATTAAGTTCTTC 8744 32 100.0 34 ................................ ATACCACAAACGATTGTCGCTTGTGATCGTATCG 8810 32 100.0 34 ................................ TTCTTTCGCTACGCCAACTGAAGCGTATGAAGCA 8876 32 100.0 35 ................................ AATATACTATGAGCGAGCTATTTATCACAAGCAAC 8943 32 100.0 34 ................................ TTTAAGGTAAAACTCTCGAAATGTATATGCTTCG 9009 32 100.0 33 ................................ CGTTATGCGGGCCGATTACTGGGCGTCCACGTA 9074 32 100.0 34 ................................ CCATGTGGTAGCTGCATACACCGGACCGCCCCAA 9140 32 100.0 37 ................................ TCCCCTGGGTGATACTATCGACTTAATCAAATACAGC 9209 32 100.0 35 ................................ ATTCATACGGGCGTTATACTCGGCTTGCTTATTGA 9276 32 100.0 35 ................................ TGGTATGGAATCTGTGAATAATGATGTTTCAACCA 9343 32 100.0 33 ................................ CCTGCCGTACATCTCTTGGCTGCGCGTCACCCG 9408 32 100.0 34 ................................ ATTTGGAGGGGTACTGTGCCCATTCTCATAGTTA 9474 32 100.0 33 ................................ CGGGTTATAGCTGTCCAACATGGCTTTCCATGG 9539 32 100.0 34 ................................ ATTACGTTTGTTTCATCCGTTTCCATCGAATAAT 9605 32 100.0 35 ................................ CGAGGGCTGAGATGAGTTCGAATCAGAACTTATTC 9672 32 100.0 33 ................................ CGTGCTCAATTAAGTTCTATGGGGATCGACCCT 9737 32 100.0 35 ................................ GTTTTGAGGTACAGCTCAAGGGGTGTCCGAACAGG 9804 32 96.9 36 .......T........................ TTCCTACGATCCTCTTTGCTCTATCTCGAAGCCTAG 9872 32 100.0 34 ................................ AATACGCTGCAGACCTCACTAAAAAGAAATGGGG 9938 32 100.0 33 ................................ GTTTGCATCTTGTGCGGCTCTTATGCTGTCCTC 10003 32 100.0 34 ................................ ATTCAAGACGCACAATGCTATTTTAGCCAGCTAA 10069 32 100.0 34 ................................ GGCACTCTCGGCAAGGGAATCGCTAAAGGTGCGC 10135 32 100.0 34 ................................ TTCGCGCGTAATCGCCTCGTATGGAGCGAGTGTA 10201 32 100.0 34 ................................ GGTTGATGCTATGACAGAGGAACTTTCAAGTGAA 10267 32 100.0 34 ................................ TATATCACCAGCGAAGTCTTCGTCATCTAATCCA 10333 32 100.0 37 ................................ TTCGATGTTGCCGCCGCATCTCCGCCCGCCGTTTTGC 10402 32 100.0 35 ................................ TAGATAGGTATGGGATCAAACAGGAAGAAATCAGA 10469 32 96.9 36 .....................C.......... CGCAATGCTCCTGAACTAAAAGTTGAGAGCAGTAAA 10537 32 96.9 84 ..............A................. ATCAAGTGGATGAAATATCGATTATTCATTCTCAAGTCAGGATTGAAATTCGGCGTGCTGGTCGTACTCGGTATCGTAAGTAAT 10653 32 96.9 0 ...............A................ | ========== ====== ====== ====== ================================ ==================================================================================== ================== 33 32 99.6 36 GTCGCACCCTTCGTGGGTGCGTGGATTGAAAT # Left flank : TAGACGAGTATCCTCCATTCTTATGGAAGTAGGTGCAGTATATGCTCGTTTTGATCACGTATGATGTGAGTACAATGAGTAGGGAAGGTCAGAGAAGGCTGCGAAAAGTGTCTAAACTATGCCAAGATTATGGTCAGCGTGTCCAGCATTCTGTCTTTGAGTGTGTGGTCGATGCTACACAATTTGCTAAATTAAAAATGCAGCTGATAGACATTATAGATGAGGAACAGGATAGCCTAAGATTTTACCAGCTGGGGAACCATTACAAAAATAAGGTTGAGCATGTGGGCATAAAAGCAGCCCTCGACATGGAAGGTCCGTTGATTTTGTAGTGCGAATGTCAAGTGCACATGATTTTGCAGGGGGATTCGCACTATATAATATACTTAATTTTTATTTAAAACCAAAATAAGTAATTTATATTGATGTGTATTCGACAATTTTAGCGAAATTATTGAATAAATGACCGATTTTTCGGTGAAATTTGCTTGAAAGTCGGA # Right flank : TTTGCCAACTACTCCCTAGGTTACCATTCATCAAATATTTCAAAACCTTGGATGCCTTACTGCATTCAAGGTCTTTTATTCATAACAGCTATACCAGGTAATACCTGCGCACTCCTATTCTCGCTTGATAGGACGGATTCAGCCGGCGTAAATATTCGAAGTCCAGGTAGTTGATCTGATCGGTTAAGTAAGCGGAGGTCGTGCTGCCCGGAATTCTTCTTCTATTTAGGGAAAGGATCATTTCCTCCCCGTTCCTGACTCCAATCCCATGCCCGAAGTACCGGTCCGTCGACAGCACAATGGCGTTCTCTCCGCGCCACTGCGGGGTCAGGGGATTAAAGTCGGGGTTCGCAAAATAGACAACATCCCCCGGGTAGGCTTCATTCTTATTGTGAATAATACGGATCGGCAGGTCGCGGTCATACTGCCAGTCATACAAGAGCAGGTTCTGGAAATAGATATTAAAAGCTTCCTCTCCGATCGTATCCAGCACAGCTTTA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1816-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDSE01000071.1 Paenibacillus dakarensis strain FF9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 1815 31 100.0 38 ............................... CGTTGATCCGGTAGGAAATTCATATGTCGGATTCGAGG 1746 31 100.0 35 ............................... TATATAAGGATACATAGGAAAGTATGTGAAAAAAG 1680 31 100.0 35 ............................... AATATGGATGTTGCTTGCATTCTCGATTGCAATAG 1614 31 100.0 36 ............................... CGCAAAGTCACGAGCGGCGTATTCTCGTATATCATG 1547 31 100.0 35 ............................... TATGAATAATTCACGCCAGTTTAGTTTGTTATAGG 1481 31 100.0 37 ............................... TGTACTCAGCAGCACACAATTCCAAACCTCATACTTG 1413 31 100.0 35 ............................... CGTGAAAACTTCGAAAGTATGTCATCTGGTCTGAG 1347 31 100.0 35 ............................... TGGACCACTACGGATATACAATCCAGATGGCTGTG 1281 31 100.0 35 ............................... TAACAGGGGGTACGCAATACAGACCAACGTGAGCG 1215 31 100.0 34 ............................... CGCTACCTCACACGCGATGACATTGCGGACTTAG 1150 31 100.0 36 ............................... GATGTGCGGAAGTTACTCCGAAACTAACGTGCTGCG 1083 31 100.0 35 ............................... CTCTTGCATTCTACGTAGCAAGCCGTGTCAAAGGG 1017 31 100.0 35 ............................... CATTCATTGACCGTTGGCGAAATTATCATATCTAG 951 31 100.0 37 ............................... GGTTCTTTCTGGTTGATTCTTGCGTTTGCTGTAGCGG 883 31 100.0 35 ............................... CGGTATATCGTAAATTATTACCTCGACGTCTTGCG 817 31 100.0 35 ............................... TAACAAGTAGGGAGGGTGTGAGCCTGATGGGTAAG 751 31 96.8 35 ................G.............. TGAGTTGCCATATGTAGATAAAGATACTCCTGACG 685 31 96.8 39 .......................G....... TCACGAACGAGGACCCATGCGGTCTCAGCCCTACCCTCG 615 31 100.0 36 ............................... TGTAAATTCTAAAATATGATGATCTTCCCATATCAG 548 31 100.0 35 ............................... TATCGGCCGCGCTAGCGATTTTAGGACATCAGGCG 482 31 100.0 36 ............................... TTAATCGGCACGTCCGATCCTCCTCAATATAGTACG 415 31 100.0 35 ............................... GTCTTCGTCTTTTGTCGTGCCTTCGCGTTTACTAG 349 31 87.1 36 ........TTC.T.................. AACGGAGGGAGGATCGGCACAAACGGAAATGGAACG 282 31 100.0 35 ............................... CAAAATGCTGTGATCTTTTTTTATTTGGCAAACGG 216 31 100.0 36 ............................... GACAATAAGGCGATGTTATTCGGTAGGTTGTCGGAG 149 31 100.0 36 ............................... ATATCCTTGATGTTTTGGAGTGCTAGTTTTCCGTAG 82 31 83.9 0 ........TTC.T.....T............ | ========== ====== ====== ====== =============================== ======================================= ================== 27 31 98.7 36 TCGCACCCCATGCGGGTGCGTGGATTGAAAT # Left flank : CAAGCGCATAATGAAGAATCCGAGAGGAAGCATCCTGATCGGCTCTTTTGCCAAACGCATTCGTTCCGAGTCCAAGTGAAGATACCTGAAGCCCGCTGTATCCCAGACGACGATATTGCATATATGTCAGCTCCTTTTCCTGGATAATACTGCTTCTCATTTTAATCGGATGTATCGGAAAAGCCAAGCGGGTGCGGGCTGCGGTGAGTTGATTAACAACGAAATAAGCTGTGAAGCAACGCATTTGAACCAGATGTAGTTCCTGTTGAAGGGTTTGCTAATGCTCATCGAACTACAATATGTAGGGTGGGTAAACAAGATATAAATGATGGTGCGAATGTATAGCGCACATGAATATCCAGGGGGATTCGCACCAAAAAATAACCATTAATTTTCCTTTTTTTATACTGGAAGGGCAATTAATTAACTATAAGCAGAAATATACGGCCCTTTTTGTAACAAATCACCATTTTTCTGTTATATTATTTGAGAAATCGGAG # Right flank : TCCTTATGTATGGATCGTAGGAGCTGGTTGTTACGTCGCACCCTTCGTGGGT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCATGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.60,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //