Array 1 63896-66095 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNX01000011.1 Bifidobacterium longum strain N2E12 scaffold33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 63896 36 97.2 35 C................................... GTCAGCATATGCCACGACGAGCTAGCCCCCACCAA 63967 36 100.0 35 .................................... TTGGCTTTTTTGTATCGCAATACGCCTATCTCATG 64038 36 100.0 35 .................................... ATACCGTCCAACGGGATGCGATACAACGGCATGTC 64109 36 100.0 37 .................................... TACCCAGCGCGCCGTATATCTGAGTCCAGATATTGAG 64182 36 100.0 35 .................................... TGATGGACACAGAACCAAGTATGACCGATGTTGCG 64253 36 100.0 36 .................................... GCCGGGCGGGACGACAATCATGTGCAGACGCGCGCC 64325 36 100.0 35 .................................... CTCGACAACGACGGGAACATGCACATCGCACTCGC 64396 36 100.0 37 .................................... GCCGATTCGTCGGCATATCCGGCTGCTGGATTACCGA 64469 36 100.0 35 .................................... CTCAAGTTTGGATATTGTTGCATGGTGCAACTGTT 64540 36 100.0 36 .................................... ACCGTTCGCTAGCGGTCCTCGCGTCCTGGTCGCTTA 64612 36 100.0 35 .................................... CCGGTTGTCCTTTGACTTGACTACGTGGTCGATGA 64683 36 100.0 37 .................................... GATACGCGACAACACACTTACCGTTAGCGCTAGCCAC 64756 36 100.0 35 .................................... CACTCATACCCTGTGACTTGGTACTGGTGACCGTA 64827 36 100.0 36 .................................... GCCGATACGATTTACGAGGATGTCGATGAACTGGTT 64899 36 100.0 35 .................................... AACCGCAAGAGAAAGAAACGTGGATTCGACAACAT 64970 36 100.0 37 .................................... CGCCGCACGGCAACGGCAGCATGGACCGTTGGAACGC 65043 36 97.2 38 ...................A................ GACCGTAGAAGCCTCGTAACAGTGCACGCTGCTGGCGG 65117 36 100.0 37 .................................... GAAGAAGGATACGCATTGTTCTCGGCTGATGTGGCTT 65190 36 100.0 37 .................................... TACTCCTGTTCACGCCACCCCATACGCCCTGTAACGG 65263 36 100.0 36 .................................... GTCATGCACTAATAAGGTGTATGGCCCTACTATTAT 65335 36 100.0 36 .................................... TCCGTAACCAGAACACCCGGGTCGGTGCCCAATGTT 65407 36 100.0 35 .................................... CCGGCCTCGGAATGAGTCGCGGGATAGTCGCGTTC 65478 36 100.0 35 .................................... TTCTCGCTGATGGGCATCTGGACCACCGCCGACGA 65549 36 100.0 35 .................................... TACGTCGAAGTGCCCAATTCCCAGACCAAGGTCGA 65620 36 100.0 36 .................................... TATGCCGAGTTGGGCCGTGTATGACGGTTCTCCCGA 65692 36 100.0 38 .................................... CCCGAACGCGCGCATTATGGTTGTCCCTATGTTGTGGC 65766 36 100.0 37 .................................... CGTCCGCAGCGTCATCGGCGGAATGCGACTCGACAGA 65839 36 100.0 40 .................................... CGCCATTCATGGGCCACGAACACTCTGGCCGCCGGAGCGG 65915 36 100.0 36 .................................... TTCTCCTGAGTATGGCGGGGCACGTCCGTGGGGCTT 65987 36 100.0 37 .................................... CGCTCGCCGTCTCATTGAAGAACACCAGTACGTCCGG 66060 36 97.2 0 C................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 31 36 99.7 36 TCCTCAATGAAGTGCATACGTTTTGACGTATGCAAG # Left flank : GACCCGGTATCCGTCAACGTGGAGACCTTCGGCACCGAGCAAGGCGTGACGCGCGGCCAGATCGCCGCCGCCGTACGCAAGGTCTTCGACCTGCGCCCCGCCGCAATCATCGACGAGCTCGACCTGAAGCGCCCGATCTACTTGAAGACCGCCGCGTACGGCCACTTCGGCCGCACAGACGTTGAGTTCCCGTGGGAGAAGACCGACAAGGTCGAGGAGCTCAAGGCCGCGATTGCTGCGGAGTGAGGTGCTCTAATTAGGACAGAGAGATCATAAGAATAGGGTGCTTTCCGCTGTTGATGGCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGTGACCTGGTTTTTGTTCCGCATTTCCTCTCACTTGATAGGAGATGCGGAACAAAAAACCAGGTCACATCATATGCAAGGCCAGAGTGTAAGAGTTTTCTTTCATGCCTCACACT # Right flank : GATCCCGCCACTGAGCAGGGGGCAGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAACGGGGACGAACGTGTGGGTTTTCCCAACTCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGGGTGTTCAGTTCGGCGGTCTCTGCGTTGCTGTAGTCTCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGGCTGCGCGAAAGACAGTGTTGGCGCAAGGGCACCCATCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGGATTCTGCCATGCCCTACGCCGTTACCTTCCAGCATTCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGTTGGCGGGCGCGACGGAGCGAACCAGAAGATCATCAACTCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGAAGACTGCTGCAAGACGAGATGGACCGAATGGAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCAATGAAGTGCATACGTTTTGACGTATGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 66235-67208 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNX01000011.1 Bifidobacterium longum strain N2E12 scaffold33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 66235 36 100.0 36 .................................... GGTGTTCAGTTCGGCGGTCTCTGCGTTGCTGTAGTC 66307 36 100.0 36 .................................... GCTGCGCGAAAGACAGTGTTGGCGCAAGGGCACCCA 66379 36 100.0 36 .................................... GATTCTGCCATGCCCTACGCCGTTACCTTCCAGCAT 66451 36 100.0 38 .................................... TTGGCGGGCGCGACGGAGCGAACCAGAAGATCATCAAC 66525 36 100.0 36 .................................... AAGACTGCTGCAAGACGAGATGGACCGAATGGAGGA 66597 36 100.0 37 .................................... CATCTCAGTCCAATTGCAACCATACGGTCGGGACTCC 66670 36 100.0 35 .................................... TCGACTTCGCGGACGAATGCGGCAACGCCCTGAAT 66741 36 100.0 36 .................................... CGCGGCTTGGGTGACGCCTGAACCCCTGTATGTCCG 66813 36 100.0 37 .................................... CATGTCGGGTTTTTCCGACACCAGTAGCGCCCCATAG 66886 36 100.0 36 .................................... TCACACTGCCTGTCACGTGCCGGAAACTCGAACTGC 66958 36 100.0 35 .................................... GTCCCGTCAGGAGGAGGTCGACAAGTTGAAGGCCC 67029 36 100.0 35 .................................... AAGGGTGATTTGGCGGCCCGCGTGGTCGTCCACTG 67100 36 100.0 37 .................................... GAATCCTCGCCCGGACCAGTCGAGCGATCTGACGAAG 67173 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 100.0 36 TCCTCAATGAAGTGCATACGTTTTGACGTATGCAAG # Left flank : GCGCGCATTATGGTTGTCCCTATGTTGTGGCTCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGCGTCCGCAGCGTCATCGGCGGAATGCGACTCGACAGATCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGCGCCATTCATGGGCCACGAACACTCTGGCCGCCGGAGCGGTCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGTTCTCCTGAGTATGGCGGGGCACGTCCGTGGGGCTTTCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGCGCTCGCCGTCTCATTGAAGAACACCAGTACGTCCGGCCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGATCCCGCCACTGAGCAGGGGGCAGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATCCAACGGGGACGAACGTGTGGGTTTTCCCAAC # Right flank : GATCCCGCCACTGAGCAGGGGGCAGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGATTGTTCTTGGGTTTTGTTCTCTTGGGTTTTGTCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGGATTACTTTATCCGCAGACATCACATATCCAGTCAATCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGTTAGTGAGCTGTTTGGCGAAACAGAAACAATGTGATTCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGAACCCGTTGAGTGTTTTCCAGCGTGCATCTCAGGCTCCTCAATGAAGTGCATACGTTTTGACGTATGCAAGGTGGTACCCTCCCCATATAAGACGTGCATTTCATCTCCTCAATGAAGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCAATGAAGTGCATACGTTTTGACGTATGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 68378-67408 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJNX01000011.1 Bifidobacterium longum strain N2E12 scaffold33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 68377 36 100.0 35 .................................... ATATATTATATAGCTAGCACATGCTACTTGCAATC 68306 36 100.0 36 .................................... TCGCTAGTCAGGACGCCCGAAACGCCCTTGACTGAT 68234 36 100.0 38 .................................... TCGGCTCTGGTGAACCGCATCGGCGGCACCTACGTGAA 68160 36 100.0 36 .................................... GCTGGAATTGGCGCAATCGTATACGATTGAGGTCAA 68088 36 100.0 37 .................................... CTCGCGTAACTGATCGGAAAAAATGTCCAAACTGGAC 68015 36 100.0 37 .................................... AAGTCTTACCATAGTGCCACAAGTCATCATTACAATA 67942 36 100.0 36 .................................... GTCGGGATATCATGGGATATGAGCGTTTTGAGTACG 67870 36 100.0 34 .................................... TTCTAACCGATTGCCGCAGTCGAACGGCTTATAC 67800 36 100.0 35 .................................... ATGTTCGTCGTGAGCTTGACGATCTCGCCGTCCAG 67729 36 100.0 35 .................................... GATGAAATGCACGTCTTATATGGGGAGGGTACCAC 67658 36 100.0 35 .................................... GCCTGAGATGCACGCTGGAAAACACTCAACGGGTT 67587 36 100.0 36 .................................... ATCACATTGTTTCTGTTTCGCCAAACAGCTCACTAA 67515 36 100.0 36 .................................... TTGACTGGATATGTGATGTCTGCGGATAAAGTAATC 67443 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 100.0 36 CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Left flank : AAAATCCATACGGCTTATTTAAGGAATGTGATTTATTTTTTCGCGATATGCGATAGATGTTTGATAACTAAATAGTGGTACTAAGATAAGGGGGGTGCGGATGTTTTTTTTTGACGGTCAGGCGGCCAGTCCAAGGTGTTTGCGGTATTGCACGGGGCTTATCCAGTCCAGTGACTTCTTGATCCTAGTCTCATTGTAGTGGGTCAGGTAGGTGTATTGCTTCAATGTTTGTTGGGCGGGTTCGGCAGTGTTTTTCCGCCCCTTACGCTTACGAAATCAACGGCTCGACGACGAACTGACATCCACGAAAACAGCAATAGCGCCTATTGTTTTTGCGAGATCTGAATCGCTCCTGAATGAGCTACTAGGCATTCGCAATGAGAATATAGCGGTTCTGTGGATCTGAGAATCGAGATTGCTATGTTAGAGGACGTAGCCGTCCTCCACCTCTCGCAGTTTTGTCGGGAAAACCTCCAGTGATACTATAAATTCGAGCCTGC # Right flank : CAAAACCCAAGAGAACAAAACCCAAGAACAATCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCTGCCCCCTGCTCAGTGGCGGGATCTTGCATACGTCAAAACGTATGCACTTCATTGAGGACTTCGTCAGATCGCTCGACTGGTCCGGGCGAGGATTCCTTGCATACGTCAAAACGTATGCACTTCATTGAGGACAGTGGACGACCACGCGGGCCGCCAAATCACCCTTCTTGCATACGTCAAAACGTATGCACTTCATTGAGGAGGGCCTTCAACTTGTCGACCTCCTCCTGACGGGACCTTGCATACGTCAAAACGTATGCACTTCATTGAGGAGCAGTTCGAGTTTCCGGCACGTGACAGGCAGTGTGACTTGCATACGTCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //