Array 1 45650-45877 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUA010000005.1 Bifidobacterium ruminantium strain An807 An807_NODE_5_length_127050_cov_109.229, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 45650 24 95.8 27 ............G........... CGTAGGGCACTTCCGCAGCACTTCAAA 45701 24 95.8 27 .................A...... CGTGGGGTCATATTCAGGGTGCATATT 45752 24 100.0 27 ........................ CTCAGGGCACCAATTTGCATGCACGAA 45803 24 87.5 27 ............G.A..A...... TCCAAGGCACTCCAGCAGCACTTTGCG 45854 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================== ================== 5 24 95.8 27 TGTCCGATTCTGCAGAATCGGACA # Left flank : GCAGGGAGTCAAGCCTGCGGAGCGCGCACAGATCGCCGAACACTATCTTGAGCTGGTCGGCCTGAAGGATGCCGCGGAACGGCGCCCGTACGAGCTTTCCGGCGGCATGCAGCAGCGCGCGCAAATCGCCCGCGTGCTCGCCACGGACCCCGATGTGATTCTGATGGACGAGCCGTACGGCGCATTGGACGCACTGACTCGCGAGCACCTGCAGAACGAGCTTCTGCGCATTTGGGAGGAAAAGAAGAAAACCGTCTTCTTCATCACGCACAGCGTTGACGAGGCCATTTTCCTGGCTACCAGGGTGATCGTGATGAGCGCGCATCCCGGCACCATCAAAATGGACATTCCGATCAACATTCCCTGCAATCCGGACGATCCCGACAATATGGAGAAGATGCGCGCGCATCCGGATTTCGCCCGGCTTCGCGAGCAGATCACCACCGCCATCTACGAGCAGGACGATCAGGAATAGGGGGCATGGGAGCGGTCAGCGAGTT # Right flank : ATTCAAGTATTGGGTATGCGAGAAGCAGACGCGCGGTCAGCGCACCAGGAACACCATGACGAGGATCATCACGAAACCGACCAGATCGGTGGGCTCGAACACTGCTCCAGTCCACGCCACCGCGGAGACCGTGGCCATGACCGGCTCGCTGGTGCCGAGCATGGTGGCGCGCATCGAGCCGACGCGCATCACACCGGCCATGTACAGCCAGAACGCACCGAACGTGCCGCCGACCACGGTGAAGACCATCAGTCCAACGCCCGCCCAATCCAAGTGCGGAGCCGTGGCCCACGGTCGCACGAACGGCAATAACACAAGCCCGGAAAGCATAAACGTGATGCCGTTCACCGTGAAATTGCCCCATTTCGCCATCAATCCCACCGGAAGAATCGACATTGCCGCGGTGGAAAGCGCATTCATCAATCCCCATGCCAGGCCGATCAGCGGAAGCTTCAGCGTGGTGAAATCGCCACCCGTCGCAATAAGCGCCGTCCCCACGA # Questionable array : NO Score: 2.63 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.13, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTGCAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 113744-113920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJUA010000006.1 Bifidobacterium ruminantium strain An807 An807_NODE_6_length_118944_cov_107.336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 113744 24 100.0 27 ........................ TCTGAACACCGTTTTTTGCCTCATGAA 113795 24 95.8 27 .................A...... CACAAGCATCCGATTGGGCACCACGTT 113846 24 100.0 27 ........................ TTCGAGCGACAGTTTTGCCGGTTTGTT 113897 24 91.7 0 ............CA.......... | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTGGGGAATCGGACA # Left flank : CTGCATGCTCACGATTTGGTTGACCTGCTGGTCGAATTGCCGACGATTCTCGTCGATTTGCGATTGCGCCTCAGCGAACTTCTTGTCAGCTTCCGCGCGCGCGTCGGCAATCTGCTTGTTGCCCGCGTCGAGCAGTTCCTGCCGGCGCGCCTTCTGCCGGTCGGATTTCACAGTGTCGTTGATGCGGTCGGTCACCTGTTTGACGGTATTTTCGTACGATTCGCCGAACGTGTTTTCGTCGGCCGCGCCTGTGACGAGCAGCGTGGCGGAAGTGTAGAGGGTGCCGGCCACACCGTCGGACGGAGCAAAGAACGTGTAGTCGGTGGTGGCGGTGGAGCGGAACGAGGTCATGGCGGAGTAGCCGTCCGGATTGCTCAGGTTCCGCGGATCAAGCACCACGCCCACAATGGTGAGCCTGGTCGGAAAGCTCGGCGCCGCGTCGGCTTCGGAGGCTCCGCCCGTTTCGTCCGCGACCGCGATGGTCTCAGCGCCACTTTGAG # Right flank : ACTTGGGTATCCGAGGAGGAGGGCTCGGTGGCTTCGGGGGCTACGGTGAGGTGGCTGCCGATTTTCTTGCCGGAGTCGAGCATGAATTTTCGGGTCACCGCGATTTCGCCGGCTTTCCTCGGCAGGTGCCCTTCCTGCACGTACGGCTGGTCGATGCCATCCGTTCCGATTTCCTGCATGGTCGCCGATTTGCCGCCGTCCAGATCGAACGTCACTTCCTGCGACCGTTCCGCCTGCACTTTCGCGACGCCGTCGACGGCACGCAACGCGGCGATATCGCCATCCGTCAATCCCGCAGTGGACAGCACCTGGATGTCGTGCAGACCCTGCGCGTCAAAAAAGCGGTCAGTGCCGCGGAACGCATCGCGGCAGCCTGCGTAAATGCCGGTAAGCACGGCCACGCCAAGCAAGGTGATCATGGCGATTGAGATGAACCGTTTCCACGAATGCGCCCACATACGCAACATGTCTTTGACGAACGCCATCACGACCTCCCTCAT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTGGGGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //