Array 1 44051-42828 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWOW01000010.1 Neisseria meningitidis strain NmHA84024 Scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44050 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 43984 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 43918 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 43852 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 43786 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 43720 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 43654 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 43588 36 100.0 30 .................................... CAATAACGGCGAGTTTACGCATCAATGCGG 43522 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 43456 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 43390 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 43324 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 43258 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 43192 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 43126 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 43061 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 42995 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 42929 36 100.0 30 .................................... AAAAAAGTTGCGGGATAAGTTACAGTTTGA 42863 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //