Array 1 6548-6814 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCT02000089.1 Streptococcus iniae IUSA1 contig089, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================= ================== 6548 27 85.2 33 .....C..A.G......G......... GCCAGTGAGTCTATGTCGACTTCAGAATCTGCA 6608 27 100.0 33 ........................... AGCAGTGAGTCCATGTCGACGTCAGAATCGGTC 6668 27 100.0 33 ........................... TTAAGTGAGTCTATGTCAACATCGGAGTCAGTC 6728 27 100.0 33 ........................... GCTAGTGAGTCCATGTCAACATCGGAGTCAATC 6788 27 81.5 0 ..TG.T..A............T..... | ========== ====== ====== ====== =========================== ================================= ================== 5 27 93.3 33 TCAACGTCGCAAAGTGAAAGTGCTTCA # Left flank : ATCAGGATAGTCATATAGATTTATCGAAAGTTAATTATAAAATTTATAAATTAATAGGTTCAGATTTACTATCCGAAAGTATGAATGAAGATTATTTGAATACTAATAAGTTTGAAGATGTTACTCAAAATTTTAGAAGCGAATTTAATTCGGAAGCCAATGCAAGAGTTATTTACTGGGACAAATCATATATTCAAGAAAAATTTATTATTGTTGTTGAGGGTTCAGCTGAAAAAGATAGTAAAACTTTAAGTGTATCAACAACAATAGAACCTCTAAACAGTTATTATCAAGAGGGAGTTAAGTATGCTGCAGGAGTTAGATTGTACGGTAGCTCGGGTGAAGGAGTAGTTGATTATAATTCCCAATCGCAAAGTCTATCAAACTCAGAGTCGGCTTCAACTTCAATAAGAGAAAGCCAATCACTTTCAGAGTCAGTTTTAACATCAGCTAGTCAAAGTAGCTCAATGAGTGAGAGCATGTCAACTTCAGAGTCGTTT # Right flank : TTAAGTGAGTCCATGTCGATTTCAGAGTCA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAACGTCGCAAAGTGAAAGTGCTTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 9-440 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCT02000078.1 Streptococcus iniae IUSA1 contig078, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 .................................... ACAATTATTTTATGTCAGATATTGATGAAT 75 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 141 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 207 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 273 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 339 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 405 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.0 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : CTCTGTCAG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 7623-8783 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOCT02000074.1 Streptococcus iniae IUSA1 contig074, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7623 36 100.0 30 .................................... AATCGACGCCGAGGGAGATGTCTACATTAG 7689 36 100.0 30 .................................... CGTAGCTACTCGGGCCATTTCGATAATCCA 7755 36 100.0 30 .................................... AGCTTATTGATAAGTATAAAAGCAAGGTCA 7821 36 100.0 30 .................................... TTGATTTGAAATATTCGTTAGCAAATTCAT 7887 36 100.0 31 .................................... TGAAACATATTTAGAGACATCACGGTATTAA 7954 36 100.0 30 .................................... AATGATGTTTACATCATAGTAGAAGATTAC T [7961] 8021 36 100.0 30 .................................... TGGTACTAAATCTCTTGTAGAAGGTCTTTC 8087 36 100.0 30 .................................... TACTCCGACCAATATAACTAATAATCCAAT 8153 35 97.2 30 ...............-.................... TATGATTGTTGTGCTAACGCCTTTGGCACA 8218 36 100.0 31 .................................... TAATTGATATGTAGAATAGTCTTCTCTCTTG 8285 36 97.2 30 T................................... CCTAAATCCCAATCTTGCAATGTCCTTGCT 8351 36 100.0 30 .................................... TACTATGAACTGGATAAACCTATATGCATT 8417 36 100.0 31 .................................... GCTCAGGAACTGACTTGAGCGAAGAAGACTA 8484 36 100.0 30 .................................... GTTTGATGATGTTGTCTATACAAATACTGA 8550 36 100.0 30 .................................... TTTGATACGATCTATGTCAGCGAGCATTTG 8616 36 100.0 30 .................................... GTTTTAGCTTTTTTAAATTCTTCTTGCTTC 8682 36 100.0 30 .................................... GTGGCATTTTTGGAAATAGTTAGACAATTA 8748 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 99.7 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : TATAATTTTTCAGATGTCTTTTTGATTCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //