Array 1 52621-53441 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHV01000007.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2083 NODE_7_length_244176_cov_5.22853, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52621 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 52682 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 52743 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 52804 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 52865 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 52926 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 52987 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 53048 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 53109 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 53170 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 53231 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 53292 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 53353 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 53414 28 79.3 0 ...........C...A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70082-71942 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHV01000007.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2083 NODE_7_length_244176_cov_5.22853, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 70082 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 70143 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 70205 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 70266 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 70327 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 70388 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 70449 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 70510 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 70571 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 70632 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 70693 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 70754 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 70815 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 70876 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 70937 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 70998 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 71059 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 71120 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 71181 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 71242 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 71303 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 71364 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 71425 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 71486 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 71547 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 71608 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 71669 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 71730 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 71791 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 71852 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 71913 29 93.1 0 A...........T................ | A [71939] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //