Array 1 71653-72698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNI01000057.1 Pseudomonas aeruginosa strain AZPAE15038 AZPAE15038_contig_57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71653 28 100.0 32 ............................ ACCCTCGCCCACCACCACCAAAACCGCACCAG 71713 28 100.0 32 ............................ TTGAGGACCGCCAGAAAGAACAGGGGGTTGAC 71773 28 100.0 32 ............................ AGGAAATGCAACAGCGTCTGCGCAATCTCAGA 71833 28 100.0 32 ............................ GGGCAATGATCCACCGCGAGTTGCCCCAAGCG 71893 28 100.0 32 ............................ ACCCAGGACGCCATCCGGCGCATGAGCGAACG 71953 28 100.0 32 ............................ TATCCGATGAACGTCCGCATCCCCGCGGCTGT 72013 28 100.0 32 ............................ GGTAGACGCTGCCAGGTTAGCGGCCCGGCAGT 72073 28 100.0 32 ............................ AGCTCGGCCAGCGCAGCCCGGCGCGCTTCGCC 72133 28 100.0 32 ............................ TTGCCCGCTCAGCGCTCAGGAACGACTGACCC 72193 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 72253 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 72313 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 72373 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 72433 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 72493 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 72553 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 72612 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 72671 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 82574-81223 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNI01000057.1 Pseudomonas aeruginosa strain AZPAE15038 AZPAE15038_contig_57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 82573 28 100.0 32 ............................ TCTGAAAAAACAAGGACATACGATTGAACGAC 82513 28 100.0 32 ............................ AGCATCTTGCGCGGGGTTTCCCAAGCAACCGT 82453 28 100.0 32 ............................ ATGGTCGTCCGGTAAACAATCGCGGGACTCTA 82393 28 100.0 32 ............................ ACAATATCCGGGAGTTCAAGCCGGATCATCCG 82333 28 100.0 32 ............................ ATCACCCGAGCCATCACCATTGCCGGAGCCAT 82273 28 100.0 32 ............................ TCGGTGTTTTTCGCGGTTTATGTCGGTCGATC 82213 28 100.0 32 ............................ CGGACCCGAATCCTGATCCGCCGGATCAGCCT 82153 28 100.0 32 ............................ CTGCACCATGCAGTGCCGGACGGATACATGCT 82093 28 100.0 32 ............................ TTCGGGAAAACGCCGTGCTCAGTAATTTCAAG 82033 28 100.0 33 ............................ TATGCGCCCTGGTGGGCCTTGAGCCGACTGACT 81972 28 100.0 32 ............................ TTGCTCAAGGCTTGGAACACTGGCCACCCCGG 81912 28 100.0 32 ............................ CTGAAAATGGCGCAGGAAACCGAGGTGGCCAT 81852 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 81792 28 100.0 32 ............................ TTGTCGGCCACGCGCAGGTTCTCCACGACGTT 81732 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 81672 28 100.0 32 ............................ TGACTCTGCACGGTGTCGCAGATTGACACCTC 81612 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 81551 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 81491 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 81431 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 81371 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 81310 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 81250 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //