Array 1 54634-55740 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWUU01000010.1 Pseudomonas aeruginosa strain 175S070312EX2DAY21_PA2 IPC42_10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 54634 28 100.0 32 ............................ TGGTCGTTGATGGCGTAGCCTGCTCCGAATTG 54694 28 100.0 31 ............................ CGCACGTGCGGAGGCGGGATATGGGCGGCCG 54753 28 100.0 32 ............................ GTATTCGATGAGGACAGCGGGCTGCTCGGGAT 54813 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 54873 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 54933 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 54993 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 55053 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 55113 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 55173 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 55233 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 55293 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 55353 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 55413 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 55473 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 55533 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 55593 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 55653 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 55713 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2398-3445 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWUU01000044.1 Pseudomonas aeruginosa strain 175S070312EX2DAY21_PA2 IPC42_44.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2398 28 100.0 32 ............................ GGACGGTTCCTTGACCAGGGTCACCAGGTCAC 2458 28 100.0 32 ............................ TTACAGCCGCCGGTAAGACCCGAGCCGCCAGT 2518 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 2578 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 2638 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 2698 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 2758 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 2818 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 2878 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 2938 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 2998 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 3058 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 3118 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 3178 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 3238 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 3298 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 3358 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 3418 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 13187-12319 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWUU01000044.1 Pseudomonas aeruginosa strain 175S070312EX2DAY21_PA2 IPC42_44.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13186 28 96.4 32 ........T................... TGCATCCAGAAGGGGGCCGAGGTGATGTTCAA 13126 28 100.0 32 ............................ AGCCCGAGCTGAGCGATATCCCCTGTCACGAC 13066 28 100.0 32 ............................ GCCTACAACCTGCCGCAGATACAAGCGCAGAT 13006 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 12946 28 100.0 32 ............................ TATTACGACATCCAGTGGCGAGACATGGCCAT 12886 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 12826 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 12766 28 96.4 32 ..A......................... TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 12706 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 12646 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 12586 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 12526 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 12466 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 12406 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 12346 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGAGAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCAGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //