Array 1 113060-110835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXT010000007.1 Micromonospora sp. C95 C95_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113059 29 96.6 32 ............................T GACTACGCGCGGCTGCGTCTTAGCCGCGCCGA 112998 29 100.0 32 ............................. CCTCAGCGTTGAGCAGCGCCTGAGCCCTACGG 112937 29 96.6 32 ............................G GGATGGCGGAGCGCGGCGGAGGCGAGGGCGGC 112876 29 100.0 32 ............................. GTGTCTGGGCTGCGGGGCGTGGCCGGGTGACT 112815 29 100.0 32 ............................. AGCCGGGGTCGGCTCCAACGAAGGGGCTGGCC 112754 29 100.0 32 ............................. TCACCGAACCCCGCGACGCCGAACGGCGCGTC 112693 29 100.0 32 ............................. TCCGTCCAGGCCGACTTCACCGCCGGGGAGTC 112632 29 100.0 32 ............................. TCCCACAACGCCGTGCTGGCGGACTTGATCCA 112571 29 96.6 32 ............................G ATGTCGTCCCACATCGACCGGTACTGGGCGAC 112510 29 100.0 32 ............................. GGGTGAACGTCGGTTCGATGCACGCCGCGGCG 112449 29 100.0 32 ............................. ACGCTTAGCCGCGAGCTGCTCGACGCCGGATC 112388 29 100.0 32 ............................. GATTCCGATACCGACCAGTGCCAGCGGCAGAA 112327 29 100.0 32 ............................. CAATCAAGATCGAGGGTCTGTCGGAGTTCACC 112266 29 100.0 32 ............................. GACGTGGCATGATGCGCGAGCCCACCCCGCCA 112205 29 100.0 32 ............................. GAGACGTACGGCCTCACGAACGAATTAGGTCT 112144 29 100.0 32 ............................. CGGGTGACGGTGTCCCGCTCGTTCGGCAGCTC 112083 29 100.0 32 ............................. GCGCCGCGACGGTGCTGGCCATGCTGGCAAAC 112022 29 100.0 32 ............................. AAAGACCATGAACATCCGGAACTGCCGACCGC 111961 29 96.6 32 ............................G TCGACCCCACCGCCCCCGCCGAAGCTCGCCAC 111900 29 100.0 32 ............................. GGGACCAGTTGGTGGACGACCGATGAGGAGCC 111839 29 100.0 32 ............................. TTGCACCATTAGTGCGTGCGGTTGGTCTACTC 111778 29 100.0 32 ............................. CTGCAACTACTGACCGACAGTGCTACGACCGG 111717 29 100.0 32 ............................. CTGCAACTACTGACCGACAGTGCTACGACCGG 111656 29 100.0 32 ............................. CGGGGGGCCGGCAGTGATGCCCCTTTCAGAAT 111595 29 100.0 32 ............................. AACGGCGGCCAGTGCACGGCGAGGCTCGACGT 111534 29 100.0 32 ............................. CACCCTCGCACGACGCATCCTGAACATGCGAC 111473 29 100.0 32 ............................. ACGACGGCGGCCGCCTGGTCGCCGGTGAAGGA 111412 29 100.0 32 ............................. GACGGCGAGTTTGGCGCGGAGTACCGGGCGTT 111351 29 100.0 32 ............................. TACCAGGGTCTGGTGCACGATCCCGCCGAGGC 111290 29 100.0 32 ............................. TACCAGGGTCTGGTGCACGATCCCGCCGAGGC 111229 29 100.0 32 ............................. GGCACCACCCCCGACGTGGCCGGGGCACGCAA 111168 29 100.0 32 ............................. GGGGGTGGACAGCGACAACCGCCAGCACCACT 111107 29 100.0 32 ............................. GGGATGAACCCGTCCGCCCGGCGGGTGGGCAC 111046 29 96.6 32 .......T..................... TGCTCCCCCGAATGGGAGATGAACGTGGAGAT 110985 29 100.0 32 ............................. GGGCGATGGGTGTCCGTTCGTATCTCGCCACG 110924 29 86.2 32 .......T...T..G......G....... GAGGGACGGGACCGGCAGCTGGAGCAGACCCG 110863 29 89.7 0 T..A.................G....... | ========== ====== ====== ====== ============================= ================================ ================== 37 29 98.9 32 CTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : ACTGGCAGCCGGTGAACCTCGACGGCATCACCCTGATCCGCCGACCCGCTGCCCGCCCCACCTACAATCCCGCCACGTCCCGAGGCTGGAGCAAGGCGTCGAAGCGCCGCCGCTTCGGCCGCCGAGGCACAGACAGCGCCGCTCCCGTGGCAAGGGCCTCGGAGCAAGGTGAACACCGCGACAGCTGACCCCCAGACCACCGGGTGCTTCCGGATTTCCCGCTCATGGCCGCACGGGCACAGGATCTGTCGGGCCAGGTTCTGAAAGCAACGGTTGCTCCGTCGCCGAAACAGCACCTCGCCGCCGGCGGCTCGCCGCCGTGCTGCCCGGCACCATTCGCGCTGCGGGTGACCCTCGCCATGGCACCCGCTACCCTCGACCCAGGCTTCCGCCGCACCACGTCCCACCACCGGTGACCCATGGCAGAGGAGCGAAGGATCTTGAGAGTCAAAGTGAAGGAAAACAGCACAGTTGATCTTTAGCGCCGCAGGTCAGGAAGT # Right flank : CGGGCTGTCGGTGTACGGGTTTCAGTGCAGAGCCAGGTACGCCAGACGTACACAGGCCGGGATGTCTGCCGCTCCGGCTCGGCCGGCGGCTGCGGACGCAGTGACTCCTTCCTTGCTCACGCTGGGTTACCAGTAGAGCAGGGTCGGCACCTGGTTCGCGGAGATCCTTACGGCCAGGTGATGGCCCGTGGCAGGGTGTGTGGGCCCTGTCGAGCTGAACCGGTTGTGCTATCACGCCGTGCGCTGTCGCGGTGGCCACGGGCTGTGACCCGGACTGCGTTCCGGCTGCGATCCGTTTGCGCTATCAGGTCGACAGCATCCACACACCCCACCCCAAGCCTCCTGCCGCAACGGGTCGGACGTCGACAGAGCCCATAGTCGCCTTGATCAACATGAGGATGCTCCTGGCGGTCGGGCGATGGGTGCGACCCGGCGCGTGCGCATCGGCAGATCCACGTCGAGTGATGAAGATCGGCTGGGCTTCCGCAAACCCCACGCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129277-132294 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXT010000007.1 Micromonospora sp. C95 C95_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129277 29 100.0 32 ............................. AACATCACGACGTGGTTCGCCGGCTGGGACAT 129338 29 100.0 32 ............................. CTGGACGGTGAGCAGCCGGCCGACGACTTCCC 129399 29 100.0 32 ............................. CCGTCCTCCATCAGCACACCGTTGTCGACGGC 129460 29 96.6 32 ............................G GCCGAAGGGCTGGTACGCGGCCAGCCGGGCGA 129521 29 100.0 32 ............................. GTGGAACGGGAAGTCCTGCGCGCGGTCGGCCG 129582 29 100.0 32 ............................. GACCGGCCCGACCGGGAGCAGCCGATTCCGGC 129643 29 100.0 32 ............................. GTGTTCTTGGCCGTGCTCATGGTGGGGACGCT 129704 29 96.6 32 ............................G GGAAACCATCCGGCGGCGGTGACCGGGCGTAC 129765 29 96.6 32 ............................G CCGGATGGAACACTCAGAAAGTATTCGTCGCC 129826 29 100.0 32 ............................. GATGTCGGCGTGTCCTTCGCGGCGCGGATCGG 129887 29 100.0 32 ............................. GGACGAGGGAGTACATCCATGACGAGGAATCC 129948 29 100.0 32 ............................. AACGTCGTGCGGTGCTGGGCGATCCAGGGACC 130009 29 100.0 32 ............................. CCACCAACGACAGCAGCTGGTTCAGCGGGATA 130070 29 100.0 32 ............................. TCCACGTCCAACTGAACGTCAACTTCGCCGAC 130131 29 100.0 32 ............................. GCGGCGCGCTGGGCGTGCGTCACCTGGTCGCA 130192 29 100.0 32 ............................. CGTGGACCGGCACCGCGAACGGGCTGATCGTG 130253 29 100.0 32 ............................. ACAACGGCAGAGGACTAGACAACTCTTACGGG 130314 29 100.0 32 ............................. TACTAACCTTCACGAAAAGACAGGCATCCCTC 130375 29 100.0 32 ............................. GGTCACTGTTCCCGGCACCATGGAAACAACCG 130436 29 100.0 32 ............................. TTTCTAGTGGCCCCGCCGTGTGCGTGTGGTAC 130497 29 100.0 32 ............................. GGTATGTCGGTCACCGGCGGCCCGTCCGACTT 130558 29 100.0 32 ............................. GGCCGCGCTTCGATGAACTGCCAGAACAGCGA 130619 29 100.0 32 ............................. GAGGAGGGTGGCCGGTCCCTGACGATTGATCG 130680 29 100.0 32 ............................. TGACGCCACGCCGGTAAAGCGGCGGGCGGCTC 130741 29 100.0 32 ............................. TCCGGACCGGAGTACATCCCTCAGAGCCGACC 130802 29 100.0 32 ............................. GGCGACAAGAAGCAGGTACTGATTCGTCCGTT 130863 29 100.0 32 ............................. AAGCAACTCGTCGTCGACCCGGTCGTCGGGCC 130924 28 96.6 32 .....-....................... CTGCTCGAAACCAGTACCGCAAGCGCGTTGGT 130984 29 100.0 32 ............................. CGTGAAGGCATGGTCCTGTTCGCGGACGAACT 131045 29 96.6 32 ............................G GCGGCCCCTTCCGTACTTGAGGAGGTGCTGAT 131106 29 100.0 32 ............................. CGGAAGGAGTACCAGGCCACGCGGGTCCGTGT 131167 29 96.6 32 ............................G GCATCCGCCCGTTCGTTCAGGATCTGGCCTTT 131228 29 100.0 32 ............................. TACCAGGCCGCCGTGGATGCCGTGACCGCATC 131289 29 96.6 32 ..................A.......... ATCGGGTTGACCGGGTCCCATTCGTTGAGGTC 131350 29 100.0 32 ............................. AACCGGCCAATGCCGTGGTCCCCCAGGATGTC 131411 29 96.6 32 ............................G AACGGGGCGGAGTGGGTGAGGGTCGGGTCGCC 131472 29 100.0 32 ............................. AGGGTCCGGCAGACGGTGAAGCTGTGGTAAGC 131533 29 100.0 32 ............................. CCCGCCGGCCCCAACTACTGGCCCGAGGGTGT 131594 29 96.6 32 ............................T GTCCGTGCCGCGAGGCCGGGTCTCCGCCGTCA 131655 29 96.6 33 ............................A CACGCAGCATGAACGCGAACGATCCGCCGGTCG 131717 29 100.0 32 ............................. GTCACCTCCACCGAATTCCGCGCCGTGATCTA 131778 29 100.0 32 ............................. GTGGTACGTGTCCGCCGTCAGGGCGTCACGCA 131839 29 100.0 32 ............................. AGTGGGACCAGGACCAAGCCGCCGCCCTCGCC 131900 29 100.0 32 ............................. AATCGTTATCTGGTCGCGGTAATCGTCGGGTT 131961 29 100.0 32 ............................. ACGCCGCCCTTGGTCACAGCGACACCCCGTAG 132022 29 100.0 32 ............................. CGTACGCGGTGTCCGGGATGTTGCCGGCCGTA 132083 29 100.0 32 ............................. GCCACTCGGGTACTTCACTCGGGTGGCGTTTT 132144 29 100.0 32 ............................. TGCGCCGAGCGGCGCACACTGCCCGCATCCGT 132205 29 96.6 32 ............G................ CCGCTGAGCCAGTGGTACGGGCTGCTCGGTCA 132266 29 96.6 0 ..................C.......... | ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.2 32 CCGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TGGCCGCCCCGGAGCAGGTCGGTGCCGAACTCGGCCCCGGCACCCAACTGATCCGCGTCGACACCACCCGCTTCGACCCGTGGTTCATCTCGGGCGTCATCTCCCGCACCGACAACCTAAGAATCGCCGGCCGCGCCGCCAGCACCGGCAACGGCGCCGTCCGCATCGACGTCCGTCGACTGTCCATCCCGGTCCTACCGCTGAGCCAGCAGCGGGCGTACGGCGAAGCCTTCCGCCGCCTCGTCGAGTTCCGCGCCACCCTGGAGCGAGCATCAGCGACCGGTGCCACCCTCGCCCGTGAGATCAGCGACGGCCTCACCTCAGGCGACCTCGGCATCTCCTCCTGAGCAGACCGGCACCCCACCCGCCCGGTACGCTGCACCCAACCGCGCCCCAACGGCCACGCGCCACCCTCCCACGCCGGCCCGAAAGGGACGATCTTGCAAACCAAAGTGAACGAAAACGGCGTACTTGATCTCTAGCCCCGCAGGTCAACAAGC # Right flank : CCGGTAGGCCATCCCCTGCCCTGAGTTCGGCACCTTGAGCGGGCACCAGACCGGTAGCTTCTTTGGGCACCAGGTGGCCCATGAGCTCGGTGGGGAGTGGCTGGTCGCTGAGCAAGATCGGCACCTTGATTCGGCGCCAACTCGCGTCAACTGGCCATGATCGGCATCATGGTTGGTACCAGCGCCCAGCTCCGCCCGGCACTCTGTGTAACTTCTTCGCGACTCCTTGCGTTGGCCTTAGTTGATCGTTAGATTCGTTGACAACTATCAATCAGCTGGAAGATGGATGTCAGGGAACAGGCTTCGATCGGCGCGGTTGGCCGCCCTTGTGGTGGCCTCGACGCTGGTTGCCACGGGGGGATTCGCATCAGCGGCATCGGCCGATGTGGGGCCATTGGATCACTGCACATCGGTCGATGGCGGGGATCTGGTCTACGACGACTTCACCAAGTACAACAACTCGTTGTCGCATGCGGTGAATCAGTGGAACTCGCTGAACC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //