Array 1 215299-217278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXM010000017.1 Erwinia amylovora strain 1668 Ea_1668_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 215299 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 215360 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 215421 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 215482 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 215543 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 215604 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 215665 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 215726 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 215787 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 215848 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 215909 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 215970 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 216031 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 216092 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 216153 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 216214 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 216275 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 216336 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 216397 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 216458 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 216519 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 216580 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 216641 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 216702 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 216763 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 216824 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 216885 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 216946 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 217007 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 217068 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 217129 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 217190 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 217251 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228186-230169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXM010000017.1 Erwinia amylovora strain 1668 Ea_1668_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 228186 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 228247 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 228308 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 228369 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 228430 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 228491 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 228552 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 228614 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 228675 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 228736 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 228797 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 228858 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 228919 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 228980 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 229041 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 229102 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 229163 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 229225 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 229286 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 229347 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 229408 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 229469 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 229530 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 229592 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 229653 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 229714 29 100.0 31 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGA 229775 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 229836 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 229897 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 229958 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 230019 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 230080 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 230141 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 239633-239961 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXM010000017.1 Erwinia amylovora strain 1668 Ea_1668_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 239633 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 239693 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 239753 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 239813 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 239873 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 239934 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //