Array 1 221157-222222 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGVH010000004.1 Escherichia coli strain GU711, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 221157 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 221218 29 100.0 32 ............................. ATCCCCCGGTTATTGACCCCAAAACTGGTGAG 221279 29 100.0 32 ............................. ACTCAGTCAGCGCGTTAACCCCTTCACACGAC 221340 29 100.0 32 ............................. GAACGGCGGCTATACGGATTCGACAGGTCAGC 221401 29 100.0 32 ............................. TAACCCGGATAACTGGCAGAGTGCGAATAAAC 221462 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 221523 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 221584 29 100.0 32 ............................. AATTTTTTATCCTCATAAACAGCCTCAGAAAA 221645 29 100.0 32 ............................. AGTTACGTCGCCATCGATATTAACGGAACACC 221706 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 221767 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 221828 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 221889 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 221950 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 222011 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 222072 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 222133 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 222194 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237724-238606 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGVH010000004.1 Escherichia coli strain GU711, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237724 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 237785 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 237846 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 237907 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 237968 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 238029 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 238090 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 238151 29 100.0 32 ............................. GCTGTTTGTAAATTTAGAATTGCTGACTGAGC 238212 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 238273 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 238334 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 238395 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 238456 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 238517 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 238578 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //