Array 1 1-300 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNXQ01000011.1 Paenibacillus terrae strain PIC167 Contig_011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1 32 100.0 37 ................................ TTGCTCGTAGTATTAGGGCGGCTTTTGGACGATTTAG 70 32 100.0 34 ................................ TCCAATGCGGCCTCGACAGCAGCCTGTGTCCGCT 136 32 100.0 36 ................................ CCCAATAAATGTTGAATTACGGCCTGCTGGAAGCCC 204 32 100.0 33 ................................ TGAATGCGTTGTCTGGATTATAAAAGTCACATA 269 32 75.0 0 ................A......C.GGATTC. | ========== ====== ====== ====== ================================ ===================================== ================== 5 32 95.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : | # Right flank : TACCAGTGTTATACTGGTAGTTCCTTTTTTTGTGTATTGAATATAGAACGCATGTTTGTATATAATTAATGCAGAAGCGTTATCTTGTGCTCCACGATGCCCAATACAAGCTGCTAAAACGACTTTTCTATTTCTCAAGAAGCAATTATATTTTCTTATAACGGTTCAAATTATTGATTACATTTTAGTGTAATTTATGATTGTTATTTGCTCGGGGGTCTATTAATATAGTGGAGAGTTTTGAACTAATAGTTGCAAAGTAAGATTTTCGTATGCGAAATAAATAACCTTAGGAGGACAACACGCAACATGTCAGAATCACAATTGAAAATGGGGCCGCTGGTCATTTTGATGATTAATANNNNNNNNNNTTTATTGCCATGCTGGGAATTGGCCTCATCATTCCGATCCTCCCCAAATTTATGGGTTCCCTGGGAGGCACTGGTGAAACGGGAGGCTACCTGGTTGCCGTATTCGGCTTGACCCAGTTTCTGTTTTCA # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 503392-503901 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNXQ01000014.1 Paenibacillus terrae strain PIC167 Contig_014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 503392 32 100.0 36 ................................ AACTCTCGGATCGGTAAAAGCATCCATGATACCGCG 503460 32 100.0 38 ................................ AGATAAACAAAATAACCAGCTACATCATTATCATTTGG 503530 32 100.0 37 ................................ GGCCATACGTTGATAAGTACATTGAGGGTATGGGTGA 503599 32 100.0 35 ................................ ACTGTACTTAATAAACCATCAAAACGTTTGTATTC 503666 32 100.0 36 ................................ CAAGTATGCATACCGATATTGACGATATCCGGTGTC 503734 32 100.0 37 ................................ TTTAAGGACAACGACACTGAATGCTGGATATTGGTAT 503803 32 100.0 35 ................................ TTCCGCGGTTGGTCGATCTGACCGGATGGGCTACA 503870 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 8 32 100.0 36 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAGTTCCGTATCCGTGTCAATGTCATCTATCCCGGAGCGATTTCGACGAATATTGACGAAACTACGGAGAAATCCGAAAGGTTAAAGCAGATTACCATCCCCGTTCAATTTCCCGAAGGAGGGCAGCCATTGGCTGATGGGCCTGGTCAACCCGAGCAGGTAGCTGATTTGGTAACATTCCTGGCCTCCGATCATTCGCGTCATATCACTGGTGCGCAAATTGTGATTGACGGGGCGGAATCCTTATTGTTTTAGTGCTAGAGAATTCTCTGTGAGGGAAAAATATTTTGTGGTATCCTAAGTGTATTGTCTTGGTTAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGGATTAGAATCCACTTTCTATAATAGAAGTCAAGGGTGAATTCAAGCTTTTTTAGCATCGTTTTTTGCGAAAATGTATGGAATTGATATCATTAGAGTATCAATTGCTGTATTTTCGCC # Right flank : TGANNNNNNNNNNTCCTCGTGTAAACTTCCCTAACTGCACCCTACACTTCACTAAAATACACAAGCGGATTATGAGATTTTATTTATTCGGTGAATATTTATCTTGTACACTGATGTAAAAGAAAATTTTATTTCTGTTAGATCAGTTCAATCTGAAAAATCAATTATCAAATGACGATAAATAATATAGATGTTTACATAGTAAGAAGAGTTTTACCATAATTAATAAAGCCATTCGTCTTTTCGGAATCATCATCTCTATTCACTGCCAATCTTGGAATATCAATTATCGGATGCTTGAAAAATGTGAATTGACGCCGATATATATTCAGAACCAGACCATATAAGCTCATTTACACCAATAATAAATGAAGGCAGAGGAACAGGGTTTATTTTATATGTGTAGCCCCAGTTGAAAGATAAGAGGAATGGAAGTCTGCTGTTGAAGTCACCATAAACAACGAGCGATATATGGTTGCTAAGCTTACCATATTGGAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33-268 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNXQ01000015.1 Paenibacillus terrae strain PIC167 Contig_015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 33 32 100.0 35 ................................ AGGAACAGACGGTCCTGCATTTTTAGAAGCATGTC 100 32 100.0 37 ................................ GATTTTGGACATGCTCCCTCACCTTCTTTTCAAGCTC 169 32 100.0 36 ................................ AGTCCCCTGTAATTGCTCTGTCTTTCATGGCCCAGG 237 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 100.0 36 GTCGCACTCTATCTGAGTGCGTGGATTGAAAT # Left flank : GAATATGTAAGTGTTTATCAAAAAGGAAAAGGG # Right flank : TACAACCACCACATCAGCATCTTTAATGAGCTGNNNNNNNNNNAAAGATTCGGTCACACCTTGTTTAACTAAATTGGATTTGGAGTAAATTATGAATAGACAAGCACCTATTTTTTCACTGGAATACTTACCGTTACTTATTCGACTGGAATGTAAGGAAACGACACGATTTCCTGCTTTTCTCGGCTCAACGCTTCATGGAGTGACAGGATGGGCGCTACTTCAACATTCGGAATCATATGCGTACTTATTCGAGAATCGCCGATTAGGTGGAGCTAAACAGGACATTGTCAACCCTTATATCATTGAGCCGCCTAGGCCAAAGTCTGTATACTATACAGGGGATCAGTTATGCTTCAAATTAGTGTTGTTAGGAGATGCGATTCATTATGCTAGGCATTTAGTGACTTCGTTGGCTCAAGTACAGAGATTCGGGATTGGAGCGGAACGAAAGATTTTCGAACTGACAGACATTTTGCATGGTAATCAGTATGGATTGA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATCTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 209710-209547 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNXQ01000012.1 Paenibacillus terrae strain PIC167 Contig_012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 209709 32 100.0 34 ................................ CGATCAGCTTTCCCTTTTTGGTGATAATGCGAAA 209643 32 100.0 33 ................................ TGGAGATTTAGAGAGGATGGTAATCGTGGCAGA 209578 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 GTCGCACTCTATCTGAGTGCGTGGATTGAAAT # Left flank : ACCTATGTGAAGGTGCGGAACGAGTGGCACTATATTTGCGTGCTGATTGATTTGTTCAATCGAGAGATCATTGGCCATAGTGCAGGTCCCCATAAGGACGCAGCGTTGGTCTCCCAGGCTTTTGCGACCGTGAAAGGCGATCTGCGTCAGATTCAGTGGTTTCATACCGACCGAGGCAGCGAGTTTAAAAATCACAGGATGGATGAGCTGTTAGAGACGTTTGAAATCGGTCGATCGCTGAGCGCGAAAGGCTGTCCGTATGACAACGCCGTGGCTGAAGCCACCTATAAGATCATAAAAACGGAGTTCGTGAACCAGATGAACTTTCAGAGTCTTGGTCATCTAGAACTGGAATTATACGATTATGTCCATTGGTTCAACCAACATCGTATTCATGGAACTTTAGGCTACATGACGCCTGTTCAATATCGCCTTGAAGCCCTTAAAAAAGTTGTTTGATTTACTGTTGACAATCCAATCCAAGTTCTGAGCTTTTTGCT # Right flank : GTATATTGTTTAAGCTTAGTCCAAGTTGGAGNNNNNNNNNNTTAAGTTTCGCCATTGTAGCAGACGAAATACCTGTCATTTTCAATAAATCCTGCTTCTTAATCTCCCTGTCGATCAATAATTTTTGAAATGGTTTATAACTAATCATCTGATATTCCTTTCACACATCAAGTGAATTTTTCTTTAATTATATGANNNNNNNNNNCAATCACTTCAAGCTTCTTATCTTCTGGTAATGTTAAAAAGTCTTCAATTAGTTTTTCTTCAATTCTCATTACACATACCTCCTGCACTTCTTTGTTTTCATTATACACCAAAGCATGATGGGACTTAACATTCGCCTTTAATGTTTTTATGGGGTTGCCGATATTCCACCTAACGTTTCTGTATTCATGAACCCCGTAGGGGTTGTCTGTTGTAATGCCTCATCGAAACCCATCTCGCAGACCAAGGCTCCGTTAGGAGCCGCAGCTTGAATATTATGTTATACGATGGAATCA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATCTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 214331-213961 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNXQ01000012.1 Paenibacillus terrae strain PIC167 Contig_012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 214330 33 100.0 34 ................................. ACATAACGCAGATGCCTTTTTGTCGGACCTTGAA 214263 33 100.0 34 ................................. TACTTAATTTACTCACTGTGCCGATACCGTATCC 214196 33 100.0 33 ................................. ACCAGCAAGAGAACAGTTAATGACATAACGGGC 214130 33 100.0 34 ................................. TATAGGTAGTTCGTCAAGCTCTTTCCCGGTTAGA 214063 32 97.0 38 ...........-..................... TAGCGGTGTGATAGCCTGGTGGTGGCTTTGGTGGTGGC 213993 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 6 33 99.5 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : TCTTTTTTGAGATACCTACCTATCCACTTATGATGTTCAGCGATCATTTCATGACCCGGCAAGGTATCCTTCCCTTGCAGTAGTTTTAAAACCGCTTCTTCATGATTACCTGAAACCGCCGTTACATCCTCTCGATTCATTATCTCTTCAAGCACTTCGTTGGAGTTAGGGCCAATGCCAATCATATCACCCAGACAATATGTATGTTCGATATCTCCACGGAAATCAATATCAGAGAATACCGCACTCAATGCCGGATAATTACCATGAATATCAGTTAGAATTGCAATCTTCATCTAGGCTTCTCCTTCAAAAATTATTATTTATCTTTGATTTTGCTGGCAATAATTTCTCATAACGTTTCTGTATTCATGACGTCCGACAAAGTCGGATGTGTCTGCTGAAATACTTCTTCGAAANNNNNNNNNNTGGTCGCACTCTGTATGGAGTGTGTGGATTGAAATAACTCATTTTCAAGTTCTTGATCATGCTCCGGCGCC # Right flank : CCTACATCTTTGAATGCTGAATTAAAGATTGCACCAAAGTCGCACTCTGTATGGAGTGCGACCTTTCCACCACACACTGCGTCCATTTTAAACAAACTAGAAAACAATGCAAATCCTCTTGTCTACTCAAAATATATTTTACAAATACCTTTATGATTCTTGAAAACATAAATGTATTCACTGATCAGTGTAGAATATATATCGCTGTACTCCAATTCCAGAGAGGGGCAGATGAGGATGATAAGGCGGGTTGAAGCAAATGGAATCAAAAGAGGTTTTTTAATAACGTTAGCATTATTGCTAATGATTGCAGGGTCTTCATTGGGAATGAGTAACGCTTCCGCTGCACCATATGAGCAAAAGAAAACGCAGGATGCGCCCGCTTTTTCCGAGGTATCCGTTCATGATCCCTCCATCGTCAAAGACGGCGATACTTACTATGTGTTTGGTTCACATATCTCAGCTGCGAAGAGCAAGGATCTTAAAAGCTGGACTTCTTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 3 284186-284350 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNXQ01000012.1 Paenibacillus terrae strain PIC167 Contig_012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 284186 32 100.0 34 ................................ AAGTTTAATTTCGATTTCCTTGGTCACTCTTTTC 284252 32 100.0 35 ................................ ACATCTCTGACCGCATTGACCTCTATGGAGCCTGT 284319 32 96.9 0 ........T....................... | ========== ====== ====== ====== ================================ =================================== ================== 3 32 99.0 35 GTCGCTCCCTATATGGGAGTGTGGATTGAAAC # Left flank : CCATCCCGAGGGTGATCGGCTTAAGGTGAGGCTGTCATCTCGTTTGCAGGATCTTGCTTCGTGGAGTGACGCATTAAATCATAAAGAGAACGTCAACTACGATGACATAAAAGCAAAATTCAAGGCGGAAAATCCATCTTCTGAGTTAGGGAAAGCTTTGCTAATGGAGAACTACCGCGTGTATGAGGATCAAGTAAAGCAACAAGAAATTGCTTTACTTTCTCTTACCTTTCAATTGAATCAATTGTTGATGCTCATTAACAATCCTATTTTATTTCCACATATGGCCTATGTAAATATGTTTAACAATAACGGTAAATAGGGGTTAATTAGTGCGAACCCCAAGTGCACATGAAATCCCTGGAACATTCGCACCCCGCGCCAGACAAGGGATTCAGCGATTTTGGGGTGTGATTTTTAACAATTATTGGTGAGTTGAAAAGAGATTCGCGAAAAATCGTTTACAAAGCCTTGCTGGATAAGGATTTGTAACGCGTGCT # Right flank : CTTAGGAGATATATCAAAAGCAATAGCAACAATCTCGTCTNNNNNNNNNNTGGATTGAAACTCTTTTCCTGTCTGCTTATTAATGATTCTGATATTGTTGCTCCCTGTATTGAAATGTGAAATTTAAACTCAGCTCGCTATACCCGCATCCGTAAGTGCGTTGCTTCTCACAGGGTGATGTACAGTAAAATAATTTAGACCTTTAATTTGGTGCGAACCCCAAGCGCACATGAAATCCCCGGAACATTCGCACCTCGCGCCAGACAAGGGATTCAATGATTTTGGGGTAAGATTTTTAACATTTATTGGTGAGTTGAAAAGACATTCGCGAAAAAGCGTTTACAAAGCCTTGCTGGGTAAGGCTTTGTAACGCATGCTGTCGCTCCTTATGTAGGAGCGTGGATTGAAATCAGCAATGGCTCTAATTTATCCCAATCAGCAAGAGCAAGTCGCTCCTTATGTAGGAGCGTGGATTGAAATTGCATATGATTGTGCCTTTT # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATATGGGAGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 4 284728-285039 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNXQ01000012.1 Paenibacillus terrae strain PIC167 Contig_012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================== ================== 284728 32 100.0 38 ................................ CAGCAATGGCTCTAATTTATCCCAATCAGCAAGAGCAA 284798 32 100.0 37 ................................ TGCATATGATTGTGCCTTTTTCAATGCGTTTCCTTTC 284867 32 100.0 37 ................................ TATCATTGAATGCAGATAACCCTCTACAGCATGTTCA 284936 32 100.0 40 ................................ GTGCATTCTCGACAGTCATAAATTCCTTGGTACTGGTCAA 285008 32 93.8 0 .......................A.......G | ========== ====== ====== ====== ================================ ======================================== ================== 5 32 98.8 38 GTCGCTCCTTATGTAGGAGCGTGGATTGAAAT # Left flank : TCGATTTCCTTGGTCACTCTTTTCGTCGCTCCCTATATGGGAGTGTGGATTGAAACACATCTCTGACCGCATTGACCTCTATGGAGCCTGTGTCGCTCCTTATATGGGAGTGTGGATTGAAACTTAGGAGATATATCAAAAGCAATAGCAACAATCTCGTCTNNNNNNNNNNTGGATTGAAACTCTTTTCCTGTCTGCTTATTAATGATTCTGATATTGTTGCTCCCTGTATTGAAATGTGAAATTTAAACTCAGCTCGCTATACCCGCATCCGTAAGTGCGTTGCTTCTCACAGGGTGATGTACAGTAAAATAATTTAGACCTTTAATTTGGTGCGAACCCCAAGCGCACATGAAATCCCCGGAACATTCGCACCTCGCGCCAGACAAGGGATTCAATGATTTTGGGGTAAGATTTTTAACATTTATTGGTGAGTTGAAAAGACATTCGCGAAAAAGCGTTTACAAAGCCTTGCTGGGTAAGGCTTTGTAACGCATGCT # Right flank : GAATGTATTTCTCATACCACACACATAGCACAGCTATCACGTTCCTCATTTTTCATTGAAATACACAAAAAGGTTTGCCCTAGTACTTGGCAAGCCTTCTTGTGCTGGTTGTAAAACGGAAATAGGTTCAATGAACCAACATTTTTATAGATGTGGAACTGTTCGGAACACCACTCTAAAAAGTGGAACACAAAAGAAGCCCGTTTTGAAAACAGACTCCTTAATCTATTCCCACGCTAACATGCACAAACCACGCTATTCTGTTTCTTCAAATTGCATTAGCACGGAAATGTCCTTGATCTCCAAAGCATGGGCGATCTTTTCAAGCATAAGCAAGTTTACTTCTTGTCTTCCATTTTTACAAAGCTGTGAGATTCTTGCTTGATTAACACCTGATTTTTCAGAAAGTTGCATTTGCGTCATATTTCGCTCTTTTAACACTTCTTTAAGCCTTATATTTAATTTTAGCAAGAAAAAGAAACCTCCTAAAAACTCATTGA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 287889-288191 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNXQ01000012.1 Paenibacillus terrae strain PIC167 Contig_012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 287889 32 100.0 34 ................................ CACCAGACCTAAGTCCATGCCCCCAGCTCCGCTG 287955 32 100.0 33 ................................ CTTGCGTTGGTATCCAGTTAACGACAAGTTAAG 288020 32 100.0 36 ................................ CAAACTGAATACTGCAACTGGGTCAGGTGTTCTCAC 288088 32 100.0 38 ................................ TGTATGCACCATTGACCGTGATGGAGCCGACAGCAACC 288158 32 90.6 0 ............................TC.A | TG [288181] ========== ====== ====== ====== ================================ ====================================== ================== 5 32 98.1 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTTCATCTTGTGCCAAGGGAAGCATTCCATCATTCACATAGCTAATTAAATCTTTTTTAATAGGATCGGTTGAGCATGCTGCCAAAATAGAAAAACAACATAATACTAACATAAATACGCTTAACTTCTTCATCTGTATTCCCCTTTTTTATGTATGTTTATGGGTAATTCGATGTGACTTGTAGTCAAAAAGAACTATCCATATCTTTTATTATATCGTATAAATAAGAGAATGGTAGGGTTTTTATGGTAAAATAGTGTCGAAACTAAGTTGGTTGAGCTGCTCATTAAAAATAGGGTATCATATAGAAGCCGATTCGGTGCGAACCCCAAGCGCACATGAAAATCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTGTTGGAATGGCTATTTAACCTTAAAAGTCAATAGTTTATTCAAGCTTATTTGGCATCAGTTTTTACGATAATGTGTGGAATTGATATCGTTAGGGTATGAATTACTGCATTTTCGCT # Right flank : ACACTAAACTAGACAACTTTTTTATGGTGCCTCTGCTTGAACTCAGCCGGACTCAAGTACTCCAGAGAACCGTGAATCCGAATATGGTTGAACCAGTGCACATAGTCATGTAATTCTGTGGTTAGCTCAGCTAGACTTTCAAAATGACGTTTCTTCACAAACTCCGTTTTGAAAATTTTAAACGTGGCTTCCGCAACGGCGTTGTCATAGGGGCAGCCTTTCATGCTTAAGGAACGCTCAATCTGAAAAGCCTCCAGCGCATCGTCGATGAGCTTATTCTTGAATTCATTGCCTCGGTCCGTGTGGAAGAGCTGAATGTCATTCAGGTTGCCCTTAATCGAAGCCAAAGCACGGTAAACCAGCTTGGCATCCTTGTGTGCCCCCGCACTGTAACCGATAATTTCGCGGTTAAACAGATCCACAAAGAAGCATACGTAATTCCAATATGAACCTACTCTAACGTACGTCAGATCGCTTACGACGACAGATAACGCCTGCTC # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //