Array 1 1-154 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIN01000011.1 Natrialba chahannaoensis JCM 10990 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 1 24 100.0 42 ........................ TGTTGAATGCGCTCAACGCCCGCCTCTATCGTACTGCTTCAA 67 24 100.0 40 ........................ GGTGCCGTTGCGGTACCGGACCCTGCAATACGCGCTTCAA 131 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================== ================== 3 24 100.0 42 CCCTACAAAGGTTCGTCTGAAACC # Left flank : | # Right flank : ATGCCGGAAATCCGGACGTAAAGCCTCGTATGTACCACTCCTACAAATCTATTTTCGTCGACCTTCAAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACAAAGGTTCGTCTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 68-218 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIN01000013.1 Natrialba chahannaoensis JCM 10990 contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 68 30 100.0 33 .............................. GATCAGCGATCCCCACGTCACTGTTAGTTCCTT 131 30 100.0 33 .............................. TCAATGTTCACACCATGAAAGCGTTCGGCAAAT 194 25 83.3 0 .........................----- | ========== ====== ====== ====== ============================== ================================= ================== 3 30 94.4 34 GTTTCAGACGAACCTTTGTAGGGTTGAAGC # Left flank : AGGGGTCGATGGAAATTACTTTGTGTGAACGGTCGAATGAGTGACTCATAGCCGGATTTCCGGCATGG # Right flank : | # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCTTTGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-163 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIN01000028.1 Natrialba chahannaoensis JCM 10990 contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1 31 100.0 35 ............................... CGTGTGACGGCGTTAGCAACAGCTACGAACGTGGA 67 31 100.0 35 ............................... TGGTGCGGGAGATCGTCGACGGTGACCTCGAGGAC 133 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 3 31 100.0 40 AGCTTCAAGCCAACAAGGGTAGTTCTGGAAC # Left flank : | # Right flank : CATCCCAATATCTCGACCCTTGGGGCTTAAACATACGTTCTCCAAACCACAGATTTCATCGACCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCTTCAAGCCAACAAGGGTAGTTCTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 10427-13302 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIN01000021.1 Natrialba chahannaoensis JCM 10990 contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================== ================== 10427 30 100.0 36 .............................. AGTACGATAGAGGCGGGCGTTGAGCGCATTCAACAG 10493 30 100.0 36 .............................. TAGACCAGACTATAACTCTAGGGGGTATCAATGAGC 10559 30 100.0 39 .............................. CCAGACGCCCGCCATCTCTGCGGCCTCGCTGTTGCACTG 10628 30 100.0 35 .............................. TTCGCGAGAGAACACGCCGACGAGGTCGAAACCGA 10693 30 100.0 37 .............................. TCAGTCGTCATATCGATCAGCGGTAAGGTCGCTACCC 10760 30 100.0 34 .............................. TACCGTGGTGGTCCAGGGGGCCCGCGAAAGTAGG 10824 30 100.0 37 .............................. GAACTCCTCGCGGATACCGTCCTGATGGACCCGGACT 10891 30 100.0 36 .............................. CTCGCCCCAAGGGACGCGGTAGCGGGCTGCTGTCTC 10957 30 100.0 35 .............................. CCGAAACGATTCGCCACAGCCCGGACACTCGACTG 11022 30 100.0 34 .............................. AGGAATTTACCGCACGTTTCGAGTATGTCGTCGA 11086 26 86.7 0 ..........................---- - Deletion [11108] 11112 30 76.7 34 AAGCTCN....................... AGGAATTTACCGCACGTTTCGAGTATGTCGTCGA 11176 30 100.0 35 .............................. TCCAGTCATTTGGGGTAATGGTGCATCGGGTGCGA 11241 30 100.0 32 .............................. CATGTCAGAGGACGGAACAAACCGCCGAAACA 11303 30 100.0 33 .............................. CTTCGCCACAGCGGCGCGGCAGTAGCGACACTC 11366 30 100.0 33 .............................. GCATGGTCGTCGCCCGTCATCGGCGAGAGACCG 11429 30 100.0 37 .............................. AGTAGCACAGGGGTTGACTCACCGGAATTAGAACCAG 11496 30 100.0 37 .............................. GATGTCAGCCTACGAGGTCACTACCACGAGGCAAAAG 11563 30 100.0 36 .............................. TCATCGGGCACGTCCATACACACGACTATAGAGATG 11629 30 100.0 35 .............................. TACACGAGCTGGCCGACGGCCGCTGCACACCGCGA 11694 30 100.0 35 .............................. GTAAAGCCCCTATCGCATTACACATCGAGATAATG 11759 30 100.0 36 .............................. CCCCAGTCGACGATCTCCGACCGCTCGTCGAAGCCG 11825 30 100.0 34 .............................. CTTAAAAAGATTATGTCCCCAATGACCCTGATCA 11889 30 100.0 34 .............................. CGGTGTAGTTGTGGTCGACGGGTGCCGTGCGCTC 11953 30 100.0 36 .............................. GGCTCCTCTCGGGTCGCACGGTGGACTCTGCGGAAG 12019 30 100.0 36 .............................. GCCGCCACGAGCAGGACCTCGACGCCGACGACCTCC 12085 30 100.0 36 .............................. AAGACTACGTCGAGGCCGGCGACGCCGAACTCGTCG 12151 30 100.0 35 .............................. GAGGGGAGTGATTTCATGTGTCGGAATACACTCTC 12216 30 100.0 36 .............................. AGGCATGGAACCGACTCGCCGACCACGGCGACGGCA 12282 30 100.0 33 .............................. GGTAAACGGCACCTGATCCGGATGATCGGCCGG 12345 30 100.0 34 .............................. CTCCCACACCTGCAGCTAGAGTAGGAGGCGACGT 12409 30 100.0 37 .............................. GACCGGCCGAAGAGCCTGCAAGGGGAGGGCGTCGACC 12476 30 100.0 35 .............................. GACGTTCGCCTCACCGGCATCGAGGAGCTACCAGA 12541 30 100.0 35 .............................. TCGAACTTCCGGGAGATGAACGAGCACGACGTCGC 12606 30 100.0 35 .............................. CTCGTAGACGAAGTCCCACTTGATGTTTTCGTGGT 12671 30 100.0 33 .............................. GCGCACTTAGTCGCGGAGAAGCGCCACCAGGCG 12734 30 100.0 36 .............................. GAGAATCGCGATCTGGACCTCGGAGTCCTTGTACTC 12800 30 100.0 32 .............................. GAACTGCTCGTCGACAAAGCCACCGTCGTCGG 12862 30 100.0 36 .............................. ATACAATCACTCCACGTCGACGAGCGACGGCCGCCA 12928 30 100.0 35 .............................. GGATGACTGAGGCTGCGATTGCTGCTGCGGAACAC 12993 30 100.0 36 .............................. GCCTGGACCGCCATCTCATCAACGACGGCAACGACG 13059 30 100.0 35 .............................. GGACTCCAACAACCGGACTTCGCGCTTGTCAGCGG 13124 30 100.0 51 .............................. GAAGACGGCGGCAAGACGTGGAAAGTCTGTCTCGACTTGTTTCAGACGAAC 13205 30 80.0 38 C...GTAGN..................... GAAGACGGCGGCAAGACGTGGAAAGTCTGTCTCGACTT 13273 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =================================================== ================== 45 30 98.7 35 GTTTCAGACGAACCTTTGTAGGGTTGAAGC # Left flank : CGAACAGTTGACCATCCAAATTTGAAACGAAAAGTCAGCTACCAGTATCTGATGCGACTCGAGGCGTACAAACTCAAGAAACATCTCCTGACCGGTGAGAAGTACGAGCCGTTCAAACGGTGGTGGTAACATGTACGTTGTCATGGTTTACGACCTTCAGGCTGATCGCACACACAAAGCTCTCAAGATCGGTCGTCGGTATCTCACTCACGTTCAAAACTCTGTTCTTGAAGGTGAGATCTCGAAGGGCGATCTCGAACAGCTCCGTGGTGAAGTCGAAGAGTTACTCGAGCCCGGCGAGTCTACGATTATCTACGAGCTCTCGTCAGACGCACTTCTCGATCGAACGGTGTACGGCGAAGATCCAACAGAGGATCAGCGCTTTCTCTAATTCTGGAGTGTTCCGTCAACCCCCACGGGAATGACGACTATTGAAGGTCGACGAAAATAGATTTGTAGGAGTGGTACATACGAGGCTTTACGTCCGGATTTCCGGCATG # Right flank : CTTGACAACAGTCGACTTGAGCGGCATTACAGGTTGAACAGGCGCAATGCCACGGTCTTCAGGCCGTGGATACGCGCCGTCACTTAGTGACACAATCCACCGACGATAGCACGGCCTGATATTCCAACAGATACTTAAGATATCGTGCCTAATTACAATTGTAATGGTCACGGTGACTGTCACCGCGAAGTTTCACAACCCATCCCTCTCACGGCGGAAAGAGTGGCAACACGCCAGCCGACTCTACCGTGACACCAAACAGTTCTGTATCGACGGATGGGAAAACGGCGACTTCGACAAATCCGTGACCACCGCCAGCATCGACAACGACCTCTACTCGGCTATCCAGAACCAAGCCATTCGAGAGGCGAAATCCGACCACAACAAGGACGGAGAGGTTCGCTACCGAGAGAGTCAACCGTTCGCCGTCAACAACCAGAACTGGGAACTCGACACGACCGAGAACGGCACAGTCGTCGTCGGATTCCCATGTGTCTCCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCTTTGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-154 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIN01000076.1 Natrialba chahannaoensis JCM 10990 contig_77, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================== ================== 1 23 100.0 43 ....................... TGTTGAATGCGCTCAACGCCCGCCTCTATCGTACTGCTTCAAC 67 23 100.0 42 ....................... CGTATGGAGTGTTTTGTGGGTCCTCTACACCAAGGCTTCAAC 132 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =========================================== ================== 3 23 100.0 43 CCTACAAAGGTTCGTCTGAAACC # Left flank : | # Right flank : ATGCCGGAAATCCGGACGTAAAGCCTCGTATGTACCACTCCTACAAATCTATTTTCGTCGACCTTCAAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTACAAAGGTTCGTCTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 9877-8804 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIN01000047.1 Natrialba chahannaoensis JCM 10990 contig_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9876 30 100.0 33 .............................. TCAATGTTCACACCATGAAAGCGTTCGGCAAAT 9813 30 100.0 34 .............................. ACTGACATCGGTGTCAGTGTCTTCGTTGGCGTAG 9749 30 100.0 37 .............................. TGCGAATCCAGCACAAGCAAACACTGTGAGGATGATC 9682 30 100.0 36 .............................. AGTCGTGTCGAGCGTTCCCTTACAGCTTGGGCACCG 9616 30 100.0 36 .............................. CAGTTGATCGACTACGGGAGCGTCACGCCGATCTAT 9550 30 100.0 35 .............................. AGCCGAGAACGGCGATGCGCAAGTTGAAATCGACG 9485 30 100.0 36 .............................. GTCTGGACTCTCTGGAGCTGTATCCAGGTCGATGAT 9419 30 100.0 35 .............................. TATTGGGGTCGTGGCCGTAATATTGAACATCTATT 9354 30 100.0 35 .............................. GTCTCGATCCCCCACCGCTGTCGGTACCAGTGAGC 9289 30 100.0 36 .............................. TCTGTAGGGGCGAGGTTTCTCCACTCCCCTGAGTTG 9223 30 100.0 36 .............................. GAGGAAATTGAGGTCAGCGAGCGTGATCTCAACTCA 9157 30 100.0 33 .............................. GAAGAGTCGGTCTCTCCCCACGCGTCGTTGAGT 9094 30 100.0 36 .............................. GTTCGGCCGACTCTTCAAGTCCTTCAGGCGTCGCCA 9028 30 100.0 35 .............................. ACACGCGTCGGCTCCGGTCTCAAAATCTTAGGTTC 8963 30 100.0 36 .............................. TCAGGCCGGCCGATGAGGCGGAACTCGGTGCTGCCG 8897 30 100.0 34 .............................. ATGCTCCACCTCCGTTGAGATCGACCGTATCCGG 8833 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 100.0 35 GTTTCAGACGAACCTTTGTAGGGTTGAAGC # Left flank : TCGAGCGTGCCCGCCGCGGGTCGGGACTCGGAACGGGTGCAGTGGACAATCCGAACCGCGTTCCCGTGACGGTCGGACTCGAGGGCAGCGGGCCGGATCATCTCGCGGGTGTGCTTGATGCGATTGCGGAACTCGACGCCGTCGATGTACTTTCTTCGTTGCCGGAAGAGTGATTGGTCTCTCTCCCGTTCAGGTGTGCTTTTGTTTTCACTTTGCGCGTTCGAACGGTCGTTTGACGGTTGACTATTGGGACTTGTCCGCCGGCGTCGCCTCAATTAGACTGTCTGACTTGATTCTTTGTTGTGGGTTGCTCTTTGATCCTCCTGGTCTCGTTCCTCTTATCGTCTCAGTCTGTCTGTACGATGTGGGAACTCGCCCACGACTCCATTCGTGGTGTGGTTTTCCATCGACCCCTGGGGGGAACACGTGTATTAGGGGTCGATGGAAATTACTTTGTGTGAACGGTCGAATGAGTGACTCATAGCCGGATTTCCGGCATG # Right flank : CGTTTATTGGACCCCCATCCATACCCGTATCAGGGGGTTTCAGACGAACCTTTGTAGGNCGAACCTTTGTAGGGTTGAAGCCGTTTATTGGACCCCCATCCATACCCGTATCAGGGGGTTTCAGACGAACCTTTGTAGGGTTGAAGCGAACGGCGCGACAGTCGTAACGTGCGGCTGGAACAGCGTTTCAGACGAACCTTTGTAGGGTTGAAGCCTTCGCGAGCGATTCGTCCAGAACCTCCGCCTCGATCGTTTCAGACGAACCTTTGTAGGGTTGAAGCTAAGAGCCGGAGCTCGTCAAGCACCTGGCGACGCGCGTTTCAGACGAACCTTTGTAGGGTTGAAGCCGTCTGTGGGAAGACCAACACCGTTCCCTGACTGCTGGTTTCAGACGAACCTTTGTAGGGTTGAAGCCGCCGTCAGCGCGTGCAACTAACCCGAACTCAGACAAGTTTCAGACGAACCTTTGTAGGGTTGAAGCNCGAACCTTTGTAGGGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCTTTGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6407-7422 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIN01000082.1 Natrialba chahannaoensis JCM 10990 contig_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6407 30 83.3 34 A....G.A..T...G............... CACAGATCGACGACGTCGTCGAGCGACGCAGTTG 6471 30 93.3 36 ..........T....A.............. GGCTCCTACCGCACTAAATGTATCCTGCCCCATTTC 6537 30 86.7 36 A....G....TG.................. GTATCCGATGAAGCCATCCATGTCGATTTCGCGCAT 6603 30 90.0 36 .............G........CT...... GACGACTAGGGCTATAGCCCCCATAATGAGGACCAT 6669 30 96.7 35 .....G........................ TCGCGCTCGTCCAGATCCTCTCTAAACCGCGCTGG 6734 30 100.0 33 .............................. CGCCTGGCTCGGGTCGCTCGACAGTTGCTCGAC 6797 30 100.0 37 .............................. CAGCGACAGTGACGATGATCAGGACGAAGAGGAGCGT 6864 30 100.0 38 .............................. GGGCACATCGAACAGCACGGCGTCGCTACCCCGCGAGA 6932 30 100.0 35 .............................. CCGAGTGCACGCCGCTCGTCGGATACGGCGCGCTC 6997 30 100.0 37 .............................. TCTTGTCGCTGGTCGACCTGGACGATGTCTCTGTCTC 7064 30 100.0 35 .............................. GAGAACGAATATCTCGAGCCGGCCCCGTGGTCGGC 7129 30 100.0 36 .............................. GCTTTTCTCGACGTAGAACGTGGCTTCCTCGTTCTC 7195 30 100.0 36 .............................. CCGTCGGGTCTTGGTTCGGGTCATCCACGACAGACC 7261 30 100.0 37 .............................. GTTTCCATGAGGGTCAAGTACGCCATTCCAAACACGT 7328 30 100.0 35 .............................. GCGATCCGGTCCATCGCCCACTCGATGTTATCTTC 7393 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 96.9 36 GCTTCAAGCCAACAAGGGTAGTTCTGGAAC # Left flank : GTCTCGATACCATATTCGTCCCACCGCTCCTCAGGTAGCGGGATATACACACCAGTATCTGTTCGAAGGGTTCCACTAGAGCCAGTTTCTCCGACATCAGGCGATAGTACGCTGCGACCATCAACGTGAAACGCCATCTCTCCGACGTTGAATTCAGTTCCGGGATCGAATCGATCAGCCAGGACTCGTATCAAATCTTCGTGATGGGAAGACACGAGAACGTGTCTGATATCTCCCTCTGTAATCTGTTTCACTGGAAAGATATTCGAGAAACAAAATGCAGGGACAGAACGATCGTCGTGAAGGTCATAAAATGGTGTCCCTGAAAGGGCGTTCCAGATCACCCCCCGAAGCTTATTGTGGTATTCTGGATTATATACTGCGTCCGCATCAGCACGCAGCCGTACGAGAATGCGCATAGACAGTACTTATTTTTCACGAATAAAAAAATTATGACACGACTGGTAGGTACCTGCCGGTCACACGACGTGGGAGCGGAC # Right flank : CTGTCTCACAACTAACGGTAGTAATGTTTCGTCGACGGCTTCAAGCCAACAAGGGTAGTTCNCTTCAAGCCAACAAGGGTAGTTCTGGAACTGTCTCACAACTAACGGTAGTAATGTTTCGTCGACGGCTTCAAGCCAACAAGGGTAGTTCTGGAACGGAGAGGATCACTCCGTCGACCTCGGAGCCGACGCTTCAAGCCAACAAGGGTAGTTCTGGAACACGGGGCTGTTGGTCGGGCCGCTGCTCAGTCTGAGGCTTCAAGCCAACAAGGGTAGTTCTGGAACGGACGCAGAGTACCACTGTGGGCCAGTGAGACCGACCGCTTCAAGCCAACAAGGGTAGTTCTGGAACCCGTGCCGAAGCCGAGCCCATCATCGAGAGTATCCTGCTTCAAGCCAACAAGGGTAGTTCTGGAACTTGCCCCAAATCTGCGTCTCGTAGGACTCGCCGTCAACGCTTCAAGCCAACAAGGGTAGTTCTGGAACCAGCGTTATCCGGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAAGCCAACAAGGGTAGTTCTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 1 220-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIN01000094.1 Natrialba chahannaoensis JCM 10990 contig_95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 219 30 100.0 35 .............................. CGGGGTCTCTGGTTGGTGTTTCGATCAGCGATCCC 154 30 100.0 36 .............................. TTTATCATTGGTCTGCTGCTGCTGGCTGGAGTCGGT 88 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 100.0 36 GTTTCAGACGAACCTTTGTAGGGTTGAAGC # Left flank : AGGGGTCGATGGAAATTACTTTGTGTGAACGGTCGAATGAGTGACTCATAGCCGGATTTCCGGCAT # Right flank : CTCAATGTTCACACCATGAAAGCGTTCGGCAAATGTTTCAGACGAACCTTTGTAGGGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCTTTGTAGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 721-1808 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOIN01000081.1 Natrialba chahannaoensis JCM 10990 contig_82, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 721 30 73.3 37 AT..TT...A.....A.T....T....... AGCCTCCCCACTGTGTGACGACCTGGACGCAATCCTC 788 30 93.3 37 ..........T.................G. CGGTTGATGAGAAGCGTGCAGCAGTGGTGCTCTCGGA 855 30 96.7 36 ..........T................... GATGAGCGTCGGGATCTGGACGATCGCAGTATCGGT 921 30 96.7 37 ..........T................... CATCGCCGAGGCCGTCGCCAAGAAATAGGCCCTCCTC 988 30 96.7 36 ..........T................... AATGTCGAACAGTTGCCCCAACATCCCGATACCGAC 1054 30 100.0 38 .............................. TTTGCCTCGTCGGCGTCTGTCGTTACCGAGTAGTCAGT 1122 30 100.0 37 .............................. GCGCGGACGTCGACGAGACGCCGCTGACGATCGACCA 1189 30 100.0 36 .............................. CCACCATGGAATAGTAGGTGTTCAATGATGTCGTCG 1255 30 96.7 36 ............T................. TGGCATGTCGAGTGTGACGTTGACGCTCGGATCCGT 1321 30 100.0 36 .............................. AAGGCGCTCATGTCGGCCTTCCCTGGCACCGTGAAG 1387 30 100.0 35 .............................. TGCTCGCAGCAATCACGCCAGCAGGCAGAGTACTC 1452 30 100.0 35 .............................. CGCCGCCGTTGTCGTCGCTCATGTCTGTCTCTGTA 1517 30 100.0 35 .............................. CATCCTGCTGCTGTTCCGCGAGAGAGTCTAAGCCG 1582 30 100.0 37 .............................. CCTGGCCGACGTAGTCGATCTGTTCGAGTTGGTTCTG 1649 30 100.0 36 .............................. CGTAAGTGGGGGCCATGTTCTCCTCCGTCATATCCG 1715 30 100.0 34 .............................. CAGTTCATAGTTCCCCCACACCGTCGGCGTCGGT 1779 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 97.3 36 GCTTCGAGCCCACAAGGGTAGTACTGGAAC # Left flank : ACGGCCAGACGATCCGCATCGATGCCGATGTCAAGCCTCGTGGCGAGTACACGCAGCCGGACATCGAGAACGAAGAGGACGCACGGACAGTCGTCGAGGACATCCCCGGCCTCGCGAGCCAGCAGATGTGCGACCAGGTTGCGTTGTATCTCGTCGAGGAAACTGGCCAGTCGATCGTCGAGGCCTCGGTGACAGTGCCACACGACGCGGTCGAGTGGTCGGTGATCGACGCAATCGACCCCGACGCATTGCCCGGTGATGGTCCGTACCAGGTGCGCGAAGTCCAGAGCGACTCGAGTCAGACCGAAATCCAGCTGGGCCAGGGGCAGACGGCTGCCGAGGCCGTCAACGAGATTCGTGACCGGACCTCGCGAACCGAAGAGCGGGTCTGACTACTATCGTGCTCGGACTAAGAGGTCTCCGGTAGGTTAAGCCGTCATGACGACGTGCATATCGAGGATGGCATCAGCATAGTCGGGAGAGACATCGAGTGTGCGTCG # Right flank : CCATCCCGACATCTCGGCCCTTGGGGCTTAAACATACGTTCTCTGAGCCACTGATTCCGTCGACCTCCAATAACCGCTCAGACATGGGGGGTCGATGGAACACATTCTTCCCCCGACTGAGGTGAGAATTTACCTATGGCCTCGAACCTTCTGTTGATCACCTCAAAATGAGGTCTGGTCGGGAATGTCCCCTATTCGCAATCCAGATGCCGTTTCCAGCGCATATCTTGATGGAGAGTCAGTCGCGTCAACGTAATAGTACCTACCGTCAGTTATCGAATTGATCGCTTGATGTGACACATTTGTGTCGCGTAGTGGGAGCGATATCGTCCTCGAAGATAGATGACGCTGGATAGCGGTGCTCCAGTCGTGGTACCCTTCACTGAGAGCTTGCTTGTACATCGTCACGAGCTTGAGGTCGATGGCATCGACGCAAACAACGACATCGGCCGTGCGATAGTTCTCGCTGATGAGCGACTCTTTGGATAACGATCCAAACC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCGAGCCCACAAGGGTAGTACTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA //