Array 1 54-2596 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPB010000017.1 Bifidobacterium asteroides strain W8118 NODE_19_length_2649_cov_115.819813, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 54 32 100.0 33 ................................ CACGTCCTCTCTCGTGCCCTCGCCCGTCCAGAA 119 32 100.0 34 ................................ CTGCCCGCCCTCTCCGTGCTTGTCACCCAAGTCG 185 32 100.0 34 ................................ TGGACGCCCCTGGGCGTGGATGTGCCGTTGGACG 251 32 100.0 33 ................................ TGCTCGGACGCCTGCCGTCAGCGGGCCCACCGG 316 32 100.0 34 ................................ ACCCTCCGGCTTATGAAGTATGAGATCGAATCAC 382 32 100.0 34 ................................ ATGCCGCTATCGACGTGAACGCTTTGGCAGTCCT 448 32 100.0 34 ................................ TGCGCAAGATTCGCCAGTGGGTGAATACGCTCCC 514 32 100.0 34 ................................ CATGGATGCGGCACGGCAGCTGGCCCTGGCGCAG 580 32 100.0 34 ................................ TTTAGCGGTGTACAACATACTCCTATCTAAGGTT 646 32 100.0 35 ................................ CATAATCTGACCTGGGATGTGTACTTCATCCTGGC 713 32 96.9 35 ..............C................. CTGTGCGGCATGAGCATGGTGCCAGCACGTCCAAG 780 32 100.0 35 ................................ GAGGGCATTGGCCACCTTGGCCGCCGTCCCCGCTT 847 32 100.0 35 ................................ CGGGGCGCCAAAAACACCAACTCGATAGCCTACTC 914 32 100.0 33 ................................ TGCGTGTTGGTTTCCGCGTGGGATTGCGTGCGA 979 32 100.0 35 ................................ AGATGATCTTCAAGTCTTTCGGAAGTCTGTAAAAC 1046 32 100.0 34 ................................ CGTTAGTCGTCTACGACTATCAGCAGATTACTGC 1112 32 100.0 34 ................................ CGGTACAGCGTGCCGCCCTCCCGGGCGGGCAGGC 1178 32 100.0 34 ................................ ACCCACCGCAGGGTCCTGTCGTTGTCCACGCCCC 1244 32 100.0 33 ................................ AAGCGCGTCCTGCACAGGACGGGCACGGAGCGG 1309 32 100.0 34 ................................ CTGGACTGGGAGCCGCCGGCCAGATACCGGGGTG 1375 32 100.0 34 ................................ GCGGGCCTCCTGTCGACGGGGACGACCGAGGCGG 1441 32 100.0 34 ................................ AACCAGGTCCTGGACACGAGCCGCATCACACTCG 1507 32 100.0 34 ................................ GGACGCTCTTGCAATCGACGGCCGGCTCCATACC 1573 32 100.0 34 ................................ GCCCGACCCGACCGCCAAGCTGCACATGATGGCG 1639 32 100.0 35 ................................ ATAGATTTTATGGACATGGTGAGAAAGTACGATTA 1706 32 100.0 33 ................................ CACTCGGTCCAGCTGCTGCGCAAGACCCCGCTC 1771 32 100.0 35 ................................ ACCTTGCGCCGCAAAGCGCAGGACACCAGGCGCAA 1838 32 100.0 35 ................................ CACCTGGTCGTCTGCCTGCCGGGTCCTGCTGCGGG 1905 32 100.0 33 ................................ AATATAATTACGGCGACCTACAGCAGACCACGC 1970 32 100.0 34 ................................ TCGTGTTTGCGGTAATTCCGTCCAGAAATCGTCG 2036 32 100.0 33 ................................ GTACCGTCACTGGTCCCGGGCTGCAGATCGATC 2101 32 100.0 34 ................................ CAGAAGCAGATGAACCTCCTGGTGACAGCAGGCG 2167 32 100.0 35 ................................ CTCTCTCAGTTCCTGGCCCCACCGGTCCAGCATGT 2234 32 100.0 34 ................................ TGGTACGTTTTGGCCTGAGCGAGGGCATTGGCAT 2300 32 100.0 35 ................................ AATCGATTGCAGAACGATCTGACGCATGACAACAA 2367 32 100.0 34 ................................ GGGACGGCGGTGCAGCAGATCAAACTGTCCACGC 2433 32 100.0 34 ................................ CATGTGGAGGGCGGCGTGGATGCGGATCTGGTGG 2499 32 100.0 34 ................................ GTAGACAACCCCGATAAAGCAACCCCGCGAGAGG 2565 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 39 32 99.9 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : CGGGAGCGTGGATTGAAATCCTGACCTGACCACGGTCCTTTACGGGATAGCGGG # Right flank : CCTGACCTGACCACGGTCCTTTACGGGATAGCGGGTCGCTCCCTTCACGGGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 289334-295654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPB010000002.1 Bifidobacterium asteroides strain W8118 NODE_2_length_469792_cov_313.339060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 289334 32 100.0 34 ................................ ACATGCTGGCGCCACCTATATGACTATCGATCTG 289400 32 100.0 35 ................................ CTCGCCAAACTCCTCCCGGTGTCTTACCGCGTAAG 289467 32 100.0 35 ................................ CTCGCGGGTCGGTGACCATCACCCCGCCGAGCAAG 289534 32 100.0 34 ................................ CCCAAGGCCGGGTCCGCCCCCACGCTCTTATCCG 289600 32 100.0 34 ................................ CATCCGGCCATCACGTCCTTTGCGCGACCGTCGC 289666 32 100.0 36 ................................ TTGAAAATGATGGCGACATATACCATATCCTGAGAT 289734 32 100.0 33 ................................ ATGGACTATGTGCCGCATATCATCGGATACGTC 289799 32 100.0 35 ................................ CAGAGCGTCAAGTTTTTGTTGAAATTCAATCAGAA 289866 32 100.0 34 ................................ TATCTTGTCGCCTGTAGGGCCTACCGCATATGGC 289932 32 100.0 33 ................................ GCTTTTGGCCATATGCGGTTTTGATATATTTTG 289997 32 100.0 35 ................................ CAAACGGTCACACCCTTTTCAAAAATCCCTTTGAT 290064 32 100.0 34 ................................ ACGTCGAGGCTGGAGGGCTGTGTGGTGATGATGA 290130 32 100.0 34 ................................ CCCATGAGGCCTCTAGATGTGCGGCATGGCTAGC 290196 32 100.0 33 ................................ CCGGGCATGATAGCCACAAGGCGTATCTCGCAC 290261 32 100.0 33 ................................ CTACTAGTGTGCGCCATTGCAGGCACCGTTTGG 290326 32 100.0 35 ................................ CCCGAGGATAGGTATCTCAATGCGATGGCTGACAT 290393 32 100.0 34 ................................ CTCTAGGGTTTATCTCTATATCCTGACCTATTTT 290459 32 100.0 34 ................................ ATCTGTGTAGTAGCCGACCTTATAGTTTGGCCGG 290525 32 100.0 34 ................................ CTTATCATCCTTGATGGCGCGGTCGCAGGCTTCA 290591 32 100.0 33 ................................ ATGCGGTTTTCAACCAGTGAAACGCATTGTCTC 290656 32 100.0 35 ................................ TCGGTGAGCACGGTTTCTGTGGTCATTTTCTTAGC 290723 32 100.0 36 ................................ CTCTTGCTGGTGATATGGAAATGGCCCTCGATTATG 290791 32 100.0 34 ................................ TTGGGGTCGCCATCCATGATGATTGGATACGACC 290857 32 100.0 33 ................................ GTGAAGGTTTTGCGAAAGTCAGATACCCAGGGT 290922 32 100.0 35 ................................ TTTGCTGTTGGTGTGGCGTGAGTCTTTGAGTGTCT 290989 32 100.0 34 ................................ CAAATAGAACCTACAAACCCGCTTACAGCAGACC 291055 32 100.0 35 ................................ GCTGGTCGCATTCAGCCCGTACTCTGCTATAGCTA 291122 32 100.0 34 ................................ ATCTACAAGGGTGGCCGTGGTGGTGGTAAGTCTC 291188 32 100.0 34 ................................ AATGACGCGCTGCTCGCTGGCGGTAAGAGCACCA 291254 32 100.0 35 ................................ TGCTCCAGACCGGTGGGTGACGCTGATTAAGGCGG 291321 32 100.0 35 ................................ AGGAAGGCGACCATGAATCCTAGAGCTAAGCTCAG 291388 32 100.0 34 ................................ TTGTCGTATCGGCGTGTGCAAAGGCCAACAGCAT 291454 32 100.0 34 ................................ CGGTAGTGCCAGGTCGGCGGCCGGTTTGAGCGTG 291520 32 100.0 35 ................................ ACAATACAATCACAAATAGCACTATTACCACTCCG 291587 32 100.0 34 ................................ GTAGGCTCTGATGATAGCGTCTACGTCGATAAGG 291653 32 100.0 34 ................................ TTGCTCCTCGCTGTAGGGTCCCCAAGCCTTGCCG 291719 32 100.0 35 ................................ ATCCATCTTGGCGGTCAGCTTATCCCAGTCGGCCA 291786 32 100.0 33 ................................ GGCGAGGCGAACGCCTTCACGGAGGCTCTGCGT 291851 32 100.0 35 ................................ ATATAGTCCTTGGTGGCCAGGTCCATATCCGTCCA 291918 32 100.0 35 ................................ AGTCACAAAATCATCACATATAGGCGCCGCCACAC 291985 32 100.0 33 ................................ GTCAAATCGGCGCGGCAGTGTTCCCTGCCCCAT 292050 32 100.0 34 ................................ TCATCGGAGGTCTTCGGCGGAGGAGGACAGCAAG 292116 32 100.0 34 ................................ CCGTGTTGCTGATCCGCGTGAATTGCGACTTCAC 292182 32 100.0 34 ................................ AAAGATTGTTTGGGGGTCGAAACCTCAATAATAC 292248 32 100.0 34 ................................ TCTGCCAGACGTAGCCGCCCGGGGTGATGATGTC 292314 32 100.0 35 ................................ GCCTTGGCCCGGATCTCGTTGCGCAAGGCCTGACC 292381 32 100.0 35 ................................ TAGCCGAAAATCACAATAATAGCACTTGTGCATTA 292448 32 100.0 34 ................................ GGCCTGGGAGGGCGCAAGGAGGACACGGTGCTGG 292514 32 100.0 34 ................................ ATCGCGTCTGTTGCGGCTGCTGTGGATGAGGCTA 292580 32 100.0 33 ................................ CCGAAAATAATGTCGTCGCTTGGCTACTCTGCT 292645 32 100.0 33 ................................ TCCCAGACAATCCACTGAGGACGGAGCTCGCGT 292710 32 100.0 35 ................................ ATCGTGTATCCGGGGACAGCCGTTTTCGCATCCTT 292777 32 100.0 34 ................................ ATCGATCCCTTTCGGCAGGTTTATCCATTTGAAT 292843 32 100.0 34 ................................ ACCGTCTACATTAGCATCATCGGAACAGCGACAC 292909 32 100.0 35 ................................ TTCGCGTCTCGGGGTGTGTAAAATAGGGACTGATC 292976 32 100.0 34 ................................ CACATGAAGCCATGCCACTGGGCGCGGGCACAAG 293042 32 100.0 33 ................................ TTGGTCATGCTCTGGCGAGAAAGACGTTCGATG 293107 32 100.0 35 ................................ CGCCATTTATCAGGAGCAATCAGAAATCAGCGAAG 293174 32 100.0 34 ................................ GATGATGATACCGCCCCACTGTGGGATATGGTCT 293240 32 100.0 34 ................................ AATACTTCTCCAGCCGGATACCCATATCATTACT 293306 32 100.0 35 ................................ TGCAACCCGCTCGACCAAGACGGCTACCCAGGCTA 293373 32 100.0 35 ................................ GATTTTGAGGATGATGGGACACCGGGCAAAAAATA 293440 32 100.0 34 ................................ TCTGCCCGTCCGGATACAGGAGGAGCAATCACTA 293506 32 100.0 34 ................................ CAGACGACCCTCGAACACCGTGCCGCTATCCACT 293572 32 100.0 33 ................................ ACCGACCTGCATCTCCCGGTATCATCATCCCAT 293637 32 100.0 34 ................................ ACGTCGATTGCCGCATGCACCTCGGGTGTCATGA 293703 32 100.0 34 ................................ CCTGACCTGACCACGGTCCTTTACGGGATAGCGG 293769 32 100.0 35 ................................ ATGATGATAGGCTCAAAAAAGGACATTATAGGACT 293836 32 100.0 33 ................................ TTCAAAATACCCTTGGGTGACGGAGGGTATCAT 293901 32 100.0 34 ................................ AGGTTGGCAAGGATCGGCAACTGCATGTGATCGC 293967 32 100.0 34 ................................ GCTGGTGAGCTGGTCATAAATGGCCTGCTTGCTC 294033 32 100.0 35 ................................ AGCGTGGCCGGATACGAGGAAGGCGTGGAACAGGA 294100 32 96.9 35 ...............................C TTGACGACAGGCCGCGCCGGTACACGACCTCTCAG 294167 32 100.0 36 ................................ GAGGGGTGCACCCGCTACCAGCAGTCCGGCGTCACA 294235 32 100.0 34 ................................ TCATGACCCCCGAGGTACACGCGGCCATCGACGT 294301 32 100.0 33 ................................ GCTGACGACGCTGAAACGGTATATGCACGCCAA 294366 32 100.0 35 ................................ TCGCAACAATCCACAATATATGCTCCATACGTATT 294433 32 100.0 35 ................................ ACCTGGGACATGGATCAGATCAACAGCAAGGAGGA 294500 32 100.0 34 ................................ ATCGAAAATCGGATAATGCTTGGGGTCGAGATGA 294566 32 100.0 34 ................................ GTTCATTTTCCAGTAGGTGAATTTTTGCATGCAC 294632 32 96.9 35 ............G................... CCCAGCTTGTTCTGGACGTTTACATCCCTGTCAAG 294699 32 93.8 34 ..........G.........A........... AAATTGAAGATAAGAAATAAATTTGCTAGTATTG 294765 32 100.0 34 ................................ CCACTACCATTTATATCACTGAAAAATGCTGTAA 294831 32 100.0 33 ................................ AAAAACGTGCTCATGTTCAGCGCCAATCCGACC 294896 32 100.0 35 ................................ AGCTTACTGGCAAGTGGCCGGAATGCCAAAGGAAT 294963 32 100.0 34 ................................ GATTTCTATGCGGGCTGAGCAGGCGTGGAAAGCG 295029 32 96.9 35 ...................T............ CTTATTCAATGGCTACCATTACTGATAATAATGGA 295096 32 100.0 33 ................................ GCTCTGACCTATGTACAACAGCCCGGCGAGACT 295161 32 100.0 33 ................................ ACTTCTGACAAGGCCATCTGGAGGCAACTGCAG 295226 32 100.0 34 ................................ TGCACGAAGGTCTCCAGCACGCCTTTGGCGAGCA 295292 32 100.0 33 ................................ ATTGGTCATGAGCGTATTGACCAGATTGGCTGT 295357 32 93.8 35 .................G.A............ ACAGGTGCGTTTGGCGGCGCCGAAGAGACGATGAG 295424 32 100.0 33 ................................ GTGTGCATGTGCCAGCCATGTCGGGCGAGGACG 295489 32 100.0 34 ................................ TGGATCAAGACGGCCAGGGGCTTGTGAATAATCG 295555 32 93.8 35 ............G...........G....... TACGACACCGTGGCGCTTTCCACCCTTCGGCAGTG 295622 32 81.2 0 ...A..........A.A...A..A.......A | G [295649] ========== ====== ====== ====== ================================ ==================================== ================== 96 32 99.5 34 GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Left flank : CATTACTATGGGGTGAGGCGCCATATCCCTGTTGATCAAGTGATGATGCTATAGAATCATTGGGCCTTGGTTGTACTGCATTATAATTTGAGCCGCTGAAGTTAGATGATGGCTCAGTGGTTGGTGTAATACTGTAAACAGTGCAGTATGTTGATTGTTGCTGTGGATTATCGTTGCCGCGAAACGCTAGCAATCATGTATTCGTCTGATTCTTCGCGCTGCGGATCGTTGCTTCTGTACGATATTCAGTCTTGATTTCGCATGTTTTAGTGAGCTGATTTTGTTGAATTTCCATGCAGAGGTCTGTAGATGCGGAGAAAGCTAAAATTTTAGTGAAACAGATGAACGGTTGTTTGATAACTGAATAGTGATGTTGTCGACTTGAGACATCATCTCAATTGCTCGACTACAGACAGAAGCTGAGTACCTAGGTTGGGCTGTTGGGAGTCGTCAGCTATTAAAGCTAATCATATATTGGTCATTGGATGTATCATTGAGCA # Right flank : ACCGATTGTGCTACTTTGAATTACCCAGACAGCATTGTTTTCTAGCGGGGACATGCAGTAAATCTGTTCTTTCCTCAGAACTCTGTTATGAATTGTATTCCTTCTAAACATGAGTATGAGTTGCTGCACGGGCATAGTGTCAATCTTTTTTATGTCATTCTCTTGCTCATAGCCGCGAGAATGATCCCAAGCAGTGGACCCGGACCTGAACCTTTCAGTAGTATAGAAATACTAATGGTGCTCTCAGCATCCGCGGGAATGATTCTGCAGGACATCGGATGGATGCCCTGCAGGTTCACAAAGATGAGAGAAGATGAATGGCTATGGATGAGGATTTCATGAGAAAAATGGCATCCAAGGATAAGGCCTGTACCACTTATGACCATATTCCCCAGAAGAGGATCGATGACTATGTGTCAGAGCATCCTATCACTGACGACATGGATGATGTAGAGCGCCGGGTCTGGGATTCGCTGGATGATGAGGACAGGCGAATGATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //