Array 1 2982-2709 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGN01000047.1 Lactobacillus helveticus strain IMAU30077 Scaffold47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2981 29 100.0 32 ............................. TGGACTTCAAATTATTATCAATCAGACTCTGG 2920 29 100.0 32 ............................. AACTCCGGAGCCAGAACTTCTAACCCAACTAC 2859 29 100.0 32 ............................. TGCTCTAAATTATCGTGATATTCTTGAACATC 2798 29 100.0 32 ............................. TGCTCTAAATTATCGTGATATTCTTGAACATC 2737 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ACTAGTTAAGTAGTGATATCCCTTTTTAGCTTGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGCGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : CAGGTGTATAAGGCATTTAAGTATCTATAGTCTAATTATTTTAGAGCATAAAAAAAGACCCGCCAAAAAATAGCGAGTCCGTGTAAGGAGAATAAGAATGAAGGAGAGGTAAATCAGCCCTCGTTTCTTAGTTTATATTAGGAGTGTTAAAATGGCAAGAACTGAACCAGAAAAAAAAGCTCAAAAAAAATATTATTTGAAAAACAAAAATATGTACAAGATTAACTCCTATCGCTCAAGAGCTAAGAATTTCATTTTAAAGTATGCAACCACTGATGAGCTCATATGGCTTAGAGGCTTGATTGATGAAAGATTATCTAAAAAAAAAATTTGAAGTAGCAATAACTGATTGAGTTTGTTGGTATTCTCCACGTATGTGGAGGTGATCCTTAAGAGGGCGTCAGGTCAGTTTATACGGTCAAGTATTCTCCACGTATGTGGAGCAACCAAAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25606-23511 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGN01000004.1 Lactobacillus helveticus strain IMAU30077 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 25605 32 100.0 34 ................................ ATGATATTGTGACTATTCCACAACACACAGAAGA 25539 32 100.0 34 ................................ AACGTACAACCGCCTATGGTGAGAACGGTGAGTA 25473 32 100.0 34 ................................ AGTTGATACAGCTTTTATAGATTATGTACGTAAT 25407 32 100.0 36 ................................ TCCTACAGACAAAGAAATAGATTGGTCCCCTATTAG 25339 32 100.0 34 ................................ ATTAACCCACGCATATGGGTTTCGTGGTGGATTG 25273 32 100.0 35 ................................ CTTAATTTTGATCAAGACTTTGCAACTTTTCCCAG 25206 32 100.0 35 ................................ TAATACTAGAATGCCCCATGCGATCACATATCTCA 25139 32 100.0 34 ................................ AAAATACTCATAACGGACAAACGCTAAAGGATTG 25073 32 100.0 35 ................................ AAATGGCTACGTGAGCATCATTATCTTTGCTCTAA 25006 32 100.0 35 ................................ AAAACGCTAACGCCCAAACAAAGCTGAATCTCTTA 24939 32 100.0 35 ................................ AAAACGCTAACGCCCAAACAAAGCTGAATCTCTTA 24872 32 100.0 34 ................................ TTCTTCTAGTAGTTCCCATTCAGTAGGGGATCCA 24806 32 100.0 33 ................................ GATTATTCGGAACAACAGATGATGCTCAATGCT 24741 32 100.0 35 ................................ AATCCCCTCACTGCTAATTGATTGCTACATAATTA 24674 32 100.0 34 ................................ GCATATGGAACGACAACCACGATACTTGTTAAGC 24608 32 100.0 34 ................................ TAAAAACAAAGTCAATGTTGATGTAAGGCTTCAA 24542 32 100.0 35 ................................ ATAATTTGCGCTAATGCTTTCATGCTAGGTATATC 24475 32 100.0 35 ................................ ATAATTTGCGCTAATGCTTTCATGCTAGGTATATC 24408 32 100.0 34 ................................ AAAGGTGTGTGGATACCTGCTGAATATTGGTTAG 24342 32 100.0 35 ................................ AGCATCAACGGCTCTAATTATGTCATTGCCGGTTT 24275 32 100.0 35 ................................ TCCAAAAAATCACGGTACAAATGATGAAACTGCTT GC [24255] 24206 32 100.0 34 ................................ ACCTGATCAAACGTTAGGCAATAGATTAACCGAA 24140 32 100.0 34 ................................ TTTACGAATGTCTTGCCAATTAGTATATTTACTT 24074 32 100.0 35 ................................ TCTGTCAAAAAAAGTAGAAAACTACAAAGAGCTTG 24007 32 100.0 34 ................................ AGAAGATGGATACAATTTTTAGAAATTCCAGTCT 23941 32 100.0 35 ................................ ACACCATATGTGGTCAACGCTTTAATTGGATTACG 23874 32 100.0 34 ................................ ACTAACTGGAACATCCAAGTACTGTGCGGAAACC 23808 32 100.0 35 ................................ ATCGGCTAATTGCTTTTCAAGTGAATCAGCCTTTG 23741 32 100.0 34 ................................ ACTGAGACGCTAGACGCTATTAGATCACAGTCAC 23675 32 100.0 35 ................................ ATCAAGCTTGCCAACGGGTCGATTTTATTCTGTGA 23608 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 23542 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ ==================================== ================== 32 32 99.9 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //