Array 1 408963-408095 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSXL01000001.1 Pseudomonas aeruginosa strain AUS124 IPC368_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 408962 28 100.0 32 ............................ GTGGCACGACCGTGACCTGGGATGTGCCGACA 408902 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 408842 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 408782 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 408722 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 408662 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 408602 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 408542 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 408482 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 408422 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 408362 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 408302 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 408242 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 408182 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 408122 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37725-39250 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSXL01000018.1 Pseudomonas aeruginosa strain AUS124 IPC368_18.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37725 28 100.0 32 ............................ AAGGCGTGGAACGCGCAGCCGGGCAATTCAGT 37785 28 100.0 32 ............................ TGGTCGAACGCCTCGTCCAGTTCCTCACTGCT 37845 28 100.0 33 ............................ AGTAGTCGCCGCCAGGCGGGATTGCTCCAGGAT 37906 28 100.0 32 ............................ ATCTGGTCGGGGTCCTGAACGGCGTGCAGGTA 37966 28 100.0 32 ............................ TCGACGGTAGCCCATCGCCGGACTGGTTGCCG 38026 28 100.0 32 ............................ ATGAATTCCTAGTTTCCGAGTATTTGCTTGAC 38086 28 100.0 32 ............................ AGGTGCCAAAGCCGCTGGTGGGGATCGTTGCC 38146 28 100.0 32 ............................ GAGTCGCTCGGCTGGGTCACCGACCGCGCCTC 38206 28 100.0 32 ............................ TGTTAGAGATCAATCGATAATGAGTGTTGACC 38266 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38326 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38386 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38446 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38506 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38567 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38627 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 38687 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 38743 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 38803 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 38863 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 38923 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 38983 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 39043 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39103 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39163 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39223 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49654-48125 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSXL01000018.1 Pseudomonas aeruginosa strain AUS124 IPC368_18.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49653 28 100.0 32 ............................ TGCCAGGCGCTGGCAAGACCCTGAACGCGATT 49593 28 100.0 32 ............................ GGCACGCTGTGCTGAGCCTGGGCGCTATCCCC 49533 28 100.0 32 ............................ TACGCGAGCGCGCGCAGATGGCCTGGGAAGGC 49473 28 100.0 32 ............................ AGTACGGGCTGAAGGATCGCGCCGAGCGTGGC 49413 28 100.0 32 ............................ AACTGCGCTTGGCTAGCACGGGTTTTCTGCCA 49353 28 100.0 32 ............................ ACCACGCTCAGTGTCGCTGAGTTCGGCGACTA 49293 28 100.0 32 ............................ TTGCGGAGTAAATCGACTGGTGCGCGCTTCAT 49233 28 100.0 32 ............................ CGGAGCAGGCATTGCGGGTGCGGGAATGCTGG 49173 28 100.0 32 ............................ ATTCGAATGAACTCCATGCTCATGGCTCCTCT 49113 28 100.0 32 ............................ CGGCGGCACCACCTGCAGCATCAGCGCACTCA 49053 28 100.0 32 ............................ CAGACCGGCATCGAGGCGCGTCGCGGCCATCG 48993 28 100.0 32 ............................ TGGAAGAACGCACTTGGACGGTCAGCATTGGC 48933 28 100.0 32 ............................ ACTCTGCGCCAGAGGTCAGCACCAGAAGATCA 48873 28 100.0 32 ............................ TATAACGATATTGATGCCGGATTTAGGCCAAG 48813 28 100.0 32 ............................ AGGTAGACGTCCTCGCCCACACCGATGTCGCG 48753 28 100.0 32 ............................ GCCCAGGCACGTTTGCTCGCGCTTTGATCTCA 48693 28 100.0 32 ............................ GAAAAGAGTTGACTGCACAGTGGGCATCACCT 48633 28 100.0 32 ............................ AATTGCAGGTGACCGACAGGCTTGCGGTACCA 48573 28 100.0 32 ............................ TTCTGCGCAAGTTGTTCCTCGGACATCCCCGG 48513 28 100.0 32 ............................ AGCTCGGTCGCCCCGGGGCGGCCGGCGTAGTA 48453 28 100.0 32 ............................ AGGTCGGGGATGGATCGAACCACCCGCGCGAC 48393 28 100.0 32 ............................ GTGCCCGGGGCCGACTCCGAACCCGACGAGCA 48333 28 100.0 32 ............................ TTGTCGCTGATATCGAAGGTGTCCCACTTCCG 48273 28 100.0 32 ............................ AGTAGCCGTCGGCGTTGTGACAAAGCCATTCC 48213 28 100.0 33 ............................ GCACGGTAGGTGCCGGCGCCCACGCCGGAGGCT 48152 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGGTTGATCCGGGCTTCCAGCTCCTGGATCTTTTGCTGCTCAGGCGTCAACGCCTTGCTCTTCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAATCCACCACCCCCAGCGAACGGCAGGCGTCGATATGGCTGTAGCCTTGGTCCAACACCAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTTTCGCCTAAATCGGTGTCCGGGATCAGTAGACCACTACACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCTACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //