Array 1 25208-23918 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBMF01000009.1 Neisseria meningitidis strain P4995 00001.P4995_scaffold17.1.0.34183, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25207 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 25141 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 25075 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 25009 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 24943 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 24877 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 24811 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 24745 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 24679 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 24613 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 24547 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 24481 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 24415 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 24349 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 24283 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 24217 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 24151 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 24085 36 100.0 30 .................................... TGCGCACGAAATATCCCAATGCCACACCGG 24019 36 100.0 30 .................................... TGTATTTTTTGGTAATGTCCAAAGGTTTGC 23953 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //