Array 1 1-151 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYCF01000071.1 Escherichia coli strain A016f NODE_71_length_18749_cov_424.018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 62 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 123 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-261 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYCF01001399.1 Escherichia coli strain A016f NODE_1399_length_309_cov_139.983, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 50 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGTATTTC 111 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 172 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 233 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : AATAGCAATAGTCCATAGATTTGCGAAAACAGGTGTTCCCCGCGCCAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43056-44469 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYCF01000028.1 Escherichia coli strain A016f NODE_28_length_44517_cov_441.018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43056 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 43117 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 43178 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 43239 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 43300 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 43361 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 43422 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 43483 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 43544 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 43605 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 43666 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 43727 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [43751] Deletion [43768] 43769 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 43830 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 43891 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 43952 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 44013 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 44074 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 44135 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 44196 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 44257 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 44318 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 44379 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 44441 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : AATAGCAATAGTCCATAGATTTGCGAAAACAGGTGTTCCCCGCGCCAG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49-1297 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYCF01000331.1 Escherichia coli strain A016f NODE_331_length_1846_cov_434.463, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 110 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 171 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 232 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 293 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 354 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 415 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 476 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 537 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 598 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 659 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 720 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 781 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 842 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 903 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 964 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 1025 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 1086 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 1147 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 1208 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 1269 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGAG # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49-750 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYCF01000406.1 Escherichia coli strain A016f NODE_406_length_1300_cov_131.604, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49 29 100.0 33 ............................. TTTGGATCGGGTCTGGAATTTCTGAGCGGTCGC 111 29 100.0 33 ............................. CGAATCGCGCATACCCTGCGCGTCGCCGCCTGC 173 29 100.0 32 ............................. TCAGCTTTATAAATCCGGAGATACGGAAACTA 234 29 100.0 32 ............................. GACTCACCCCGAAAGAGATTGCCAGCCAGCTT 295 29 100.0 32 ............................. CTGCTGGAGCTGGCTGCAAGGCAAGCCGCCCA 356 29 100.0 32 ............................. CCCACCAGCGCGTTTTTTGCCGGGGCCATAGT 417 29 100.0 32 ............................. TTGAACTCACCACGATTGTTAATATGGACGAT 478 29 100.0 32 ............................. GGGGGCGCATGACCGTAAACATTATCCCCCGG 539 29 100.0 32 ............................. GGAGTTCAGACATAGGTGGAATGATGGACTAC 600 29 93.1 32 ............TT............... CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA 661 29 96.6 32 .................A........... GCAACGACGGTGAGATTTCACGCCTGACGCTG 722 29 89.7 0 .T.........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGAG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCTCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGAGCCTTATCAATATGTTGGTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCCTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //