Array 1 93831-95185 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDE01000003.1 Streptococcus agalactiae strain DE-NI-041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 93831 36 100.0 30 .................................... CTTCTTCCAATTCTTTAATGGCCCTTAGAT 93897 36 100.0 30 .................................... TAGTGTTAAAAATTCGTCCATTATTAATAT 93963 36 100.0 30 .................................... TAATATATCCAAAAGCCCCGCCTGCCAGCT 94029 36 100.0 30 .................................... TTATGTAACCAACTGTCGAATCACCCCATT 94095 36 100.0 30 .................................... GTCGTCACCTTGCCTTCTAACTTACACCAT 94161 36 100.0 30 .................................... TTAAAGTTCATTACTTTCGAAAACTCTTTA 94227 36 100.0 30 .................................... AAGAACAATTAACGGTAAAATCACAATTGT 94293 36 100.0 30 .................................... AACATTTAAAGTTATATTATAACACCCATG 94359 36 100.0 30 .................................... ACTATAAGTATTTTGTTTTATCCCTAGTAG 94425 36 100.0 30 .................................... TATCTACGAGACGAAAACAATTGCCAATGT 94491 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 94557 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 94623 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 94689 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 94755 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 94821 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 94887 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 94953 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 95018 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 95084 36 100.0 30 .................................... ACCCCAAAGTTATCAAAGAAGATGACCATA 95150 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGCCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //