Array 1 6937-6544 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPFW01000025.1 Lentilactobacillus hilgardii strain TMW12196 Lactobacillus_hilgardii_TMW12196_seq25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6936 29 100.0 32 ............................. TCGATAATGAATCCTGCTCCCAAAGTGGATTG 6875 29 96.6 32 ............................C TAAGCGAACGAGATAAGGACTTAAAAGGATTG 6814 29 100.0 32 ............................. TAAAGTAATGAAATCCATCTTTGTTTGTCGAT 6753 29 96.6 32 ............................C TGCCAGGCATTTGCGTTGGCTACACCAGGCTG 6692 29 100.0 32 ............................. GCAGAGGCGATGCGATTAATATCATCGGCACT 6631 27 89.7 32 ................--..........C TGATCACGTGCAATCGGATCAAGGCCGGACGC 6572 29 89.7 0 ..............CA..........T.. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTATTCCCCATGTATGTGGGGGTGATCCT # Left flank : GTATAGAAGATAAACTTTTAAATGTGATCAGTAGTGAAATAAGCTTCAACCACAGTCTCCTCAATGGGTCATGGGTTTAATATCATGTCTTGTTGGGGAGATTTTTTGCTTTGAGTTGACATTTTTTTGTCTAATGGATTTGATTACATTGAAAGAATTGCTGTCAATCAGACATTGCCTCAGCTGAATTTTATTAAAGTAAAGCAAAACGAGATTAACGTAAAAACATTCAAACTGGAATTAGCGTTCTAATGCTACAAGAAATGTCTAATTTATTATCAGACTTGGTCGTTTGAGTGGTTAGTCTTGATAAGTTGATGAATGACCATTAAAGATGTTGATGCTGGGCTGTTTATACTTATAGAAAATATCGAATTGTTTGAAATCCAACTTGAAATGAATTGTTTTTTAGGATAATTTAATAAGGGGACGTTTTCTAAACTTAATAAAAATGGTGTTGTTGGGATTTTAGAATGGCGGTATGACAGGGATCTTTTAGT # Right flank : CCTTACTATGCGATTATATACTTGAGGCTGATGTGAGAGGATCATCTGAATTAATAGGCATAAGAAATGATTAACAATTAATGGAGGCTGGGACAATAGTCAAAAAATCTATATTACAACTTTCTTATCCCAAAGTGAAAATCCCGTAAAATCAGCGCTTTGTAAACTGATTTTACGGGGCTTTTTAAAAAATAATACTTTTTCGACTTATGTCCCAGCCACTTCCTAGGATAAATCTAAAAAAGGACTGGGAATTTGTAGGACCAGTCTGTTTTGTTTGATTGATGCTACTTATTAAATTTTATGACTTTGAATTTTTTACCAAGGTTGGTTTCACTGAAGTGATTGGTAACATCTTCTGAGATTGAACATATCTAATTAAAAAGACGACCAACTACATAAAAATGTAATCAGCCGCCTCAAGTGCACTCCGAAAAGCAACACCGCAATTAGTAACCTTAGCGTATCAATTTCGGCACATATTGTAAACAACTTTGTTT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87070-89018 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPFW01000008.1 Lentilactobacillus hilgardii strain TMW12196 Lactobacillus_hilgardii_TMW12196_seq8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 87070 36 100.0 30 .................................... CCATCAACAGCAATTGAACCGTCAGTCTTT 87136 36 100.0 30 .................................... CTTAGTTACTGATGGGAACCTTAGTGTTAA 87202 36 100.0 30 .................................... TTGCTAACTGCACAGTTGGTGTTGTTGTTG 87268 36 100.0 30 .................................... GACCACGATGCCAATAAAGCAACGCTTGCG 87334 36 97.2 30 ............................C....... TCATCAGCCGTGCTTTCTACCCGAATAATT 87400 36 100.0 30 .................................... CTTAAGCTTGAAGATTTCACACTCAAAATT 87466 36 100.0 30 .................................... AAGCACAATGTGGCTTATGGCAAAACAATT 87532 36 100.0 30 .................................... CGACATTAATAAGGTGTCGGAAAACAAAGA 87598 36 100.0 30 .................................... AAAAGTTTCTAAATCAATTGGCAGCAGTTA 87664 36 100.0 30 .................................... TTAATGTACGGCCAATTGGTATCGCTGCCA 87730 36 100.0 30 .................................... TTGATCGGTACCAGCATTCTAATGGCAACA 87796 36 100.0 30 .................................... CGCTTTCGGTCGCATTATCTCGGAATGATA 87862 36 100.0 30 .................................... CATTTTGTCGTTTTTTAATTCTGTCTGGGG 87928 36 100.0 30 .................................... AGATTTACGAGGGGCGACCTCGTTCAAGGT 87994 36 100.0 30 .................................... GCATCGCCGTTTTTATCAACCGGATCAACT 88060 36 100.0 30 .................................... TCTGATAATTGTGAAAGGGCGTTTCATCAA 88126 36 100.0 30 .................................... TAGATATTAAAGATACTAAACACAGAAGCC 88192 36 100.0 30 .................................... GAAAAGTTTGGAGGTACTAAATAATGGTTG 88258 36 100.0 30 .................................... CAAGAAATTACAAGCCATTCGCCGCAAACA 88324 36 100.0 30 .................................... TGTCATCTCAATGAACGTTTCTAAATTTAA 88390 36 100.0 30 .................................... CAAACAATGTCAACAAAATGACGGCAAATA 88456 36 100.0 30 .................................... ACACGTTAATGGCTTACGTTCTTAATTTGT 88522 36 100.0 30 .................................... ACAGGCATTAACATTTGTGTGGCGGATTTA 88588 36 100.0 30 .................................... GTTCATCGTCTTCTTTCAGCTCAATTACTG 88654 36 94.4 30 ...............................A.C.. TAATGAGATGTTTGGCAAGAAGGGAGGTCA 88720 36 94.4 30 ...............................A.C.. ATTCTATAGTCAAAACACCCCTCAAGAATC 88786 36 94.4 30 ...............................A.C.. ATATATTCAGGAGAAACATTAAGAGCTTTA 88852 36 94.4 30 ...............................A.C.. GGTTATACGATAAAAACGGTGACTTGGTTA 88918 35 91.7 30 ...................G........-....C.. ACCTATTGGTATTAAGTGAGACGTCACCGG 88983 36 77.8 0 ..........C..............CGC....CAAA | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 98.1 30 GCTTTAGTAGTAGTTCAAAACAATGATGTTTTATCC # Left flank : GGTGAGGAGATTGAACGACGCTATTTGAGTCGAATCACGAAGGCGTTTCTTGATGACTTAACCGATCCACAAAGAAATAAGATCCATGATTCGTTGAACAGACTTTACAATACGGTTCAGGAACAGCTGTACATGATCGATTTGCCCATTGAGGTCACCTATGATTTCGATTTGAAAGAACTCACAAGATTTGCAAAAATTCATTTTGATTCTGGTACTGCCAATAACCCGTGTGCTATGATTGAATCAATCCTTAAAGTGTATGAAGAATGTCATTTAAAGACGACTTTAATTTTTACCAATGTCAGACAATATCTTTCAATCGATCAATTGAGAGAGATAGAGGCGATGATTAAAGAGATAAGGGTGTCGGTTGTACTTATCGAATTCACAGAAATGGAGCATCAAGATTTCTATGGAAACGCTGATTTTTACTACATCGATGAAGACTTCGTTGATTGGCATAATGCTAACCATTAAATTATGATGATAATTTAACG # Right flank : AAGACTAGCGTCTTTCTTTAATAATAGTATTCTCAAGAAGCGTCATAGCGATTTTCCTTTTCATTAAACGTGGTGGATTATTAATGAAAAGGGAATACGTTATGGCGTTTTTTGGTTAGGTTCATTTAAAAATCCAACGATTCATTGTTTCTAAGGTATTTTTAAGTAAATTTCAACTATTCACTTTCCCTCACCATCTTAAATAGTTGCACCCGATTATTAATCCCCAACTTTCGATAAACATTCAAGATGTGTTTCTTCAGCGTATTGTTGGTGATATAAAGTTGGTCGCAAATTTCATCGTTGTCCATCCCATCCAGCAAACTTCGGGTAATAACTTGTTGCCGTTTGTCAAGGGCAGTTTAAAAATGTAGGTTTTCGGCAGAAAGAAATGTAGGTTTTCGGCAGTTACTTGAGGCCACGTAATCGGTAAGATTTACCAGTGATCTTCACTACGTGAACATGATGAACCAAGCGATCGAGAATGGCTGCTGTCACAG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGTAGTAGTTCAAAACAATGATGTTTTATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //