Array 1 78828-79404 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJAK01000011.1 Salmonella enterica subsp. enterica serovar Cubana strain 17-030379-0002 Contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 78828 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 78889 29 100.0 32 ............................. TCCATAGTTGCCGTTTCAACGGCTAACACTGA 78950 29 100.0 32 ............................. GCTACGAAGCGCCGCTGGCCGTGGCCTATACC 79011 29 100.0 32 ............................. TGCCGAAACTGGTGACAGAAACGGTGCAAAAG 79072 29 100.0 32 ............................. TAACGGTTGCCGAGGTTCGCGCCGCTGTGGCC 79133 29 100.0 32 ............................. GTTTGCAGAGATTGAGCCGTTCCCCGCTGCTG 79194 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 79255 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 79316 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 79377 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCAATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 96638-98744 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJAK01000011.1 Salmonella enterica subsp. enterica serovar Cubana strain 17-030379-0002 Contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 96638 29 100.0 32 ............................. CTGGCCGCGAGCGCCTGGTATACGGTTTATGA 96699 29 100.0 32 ............................. TAGCCGGGTGTTATGCGAGCTCGTCAGGGAGG 96760 29 100.0 32 ............................. CCAGCGGCAACCCGATCACCATCGAAGAAGAC 96821 29 100.0 32 ............................. CGATACGCATTAACCAGCACGTCGAGTCGGTC 96882 29 100.0 32 ............................. CCAGTTTGTTGATCACGTCTGCAACCTGGCTA 96943 29 100.0 32 ............................. TCGTGATCGACGAGGCCGCATTCCACGAGGCA 97004 29 100.0 32 ............................. ATATCGCTCGCTTAAAACTCTTAGGAAAAAAA 97065 29 100.0 32 ............................. TCATCCTAATTGTCAGCGTCCCCCCCACTGGA 97126 29 100.0 32 ............................. TGAAGAATCCAAACTCCGTGACTTTGAGAAAG 97187 29 100.0 32 ............................. AAATAGGTAAGGCTATGCGTCGCGGTGATAGC 97248 29 100.0 32 ............................. GCTTTCAAGTTATAATTGGTACACTTCTTAGT 97309 29 100.0 32 ............................. TCTTAATACGCGTGAGATCCCGAAATTTTTTG 97370 29 100.0 32 ............................. GATTGACTTAAAGATGAATGTAGAAAATATTA 97431 29 100.0 32 ............................. TGGGCGAAAGCATTTAATCGCGCAGCGGGCGA 97492 29 100.0 32 ............................. ACGCTGGCAACAGCCCCACACTCATCCGCCAT 97553 29 100.0 32 ............................. CTGTATGAATTACCCCTGCTGCCGGGTTCTTC 97614 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 97675 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 97736 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 97797 29 100.0 32 ............................. GCGGAGAATTATATATCGGAATGTTACAGGAA 97858 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 97919 29 100.0 35 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTG 97983 29 96.6 32 T............................ CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 98044 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 98105 29 100.0 32 ............................. CCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 98166 29 100.0 32 ............................. CAAACAATGAAATTTTATTTGACAAATTGGCG 98227 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 98288 29 100.0 32 ............................. TTCCGGTCCTGCCCACTATTCGACAAAATCAG 98349 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 98410 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 98471 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 98532 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 98593 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 98654 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 98715 29 93.1 0 A...........T................ | A [98741] ========== ====== ====== ====== ============================= =================================== ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCTAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //