Array 1 80709-77081 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKKV01000015.1 Vibrio paracholerae strain 2017V-1144 2017V_1144_contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 80708 28 100.0 32 ............................ ATATGCAGCGCGCTTTCACTGACTGCCTTTCT 80648 28 100.0 32 ............................ ATGAATGTGGCGAATTGGTCGACAGTAATAAC 80588 28 100.0 32 ............................ CTCTCTTCGTTCGGCGAACGCAAAAACAGCAC 80528 28 100.0 32 ............................ TCACTATGGGCGTCATAGCTTAACACCAATGC 80468 28 100.0 32 ............................ TAGCCACGCATGCGCTACGCGCCTGCCCTTAT 80408 28 100.0 32 ............................ AGACTACACGGTTTCTGTGTTGGTCAAAGGCT 80348 28 100.0 32 ............................ AGATCATGCCGCCGGGCTGTAGCTGCCTAATA 80288 28 100.0 32 ............................ GAAACCGTTCACAGTGGTTAATTGTGGGCGAC 80228 28 100.0 32 ............................ ACATAAAGACCGATGGGTGAAAGGGGCGGCTT 80168 28 100.0 32 ............................ TGAAGAGAAAGAGAAGGAAGAAGAAAAGTACC 80108 28 100.0 32 ............................ AAGCAAACAGACCTGCAAAAAGAACGTTAGAT 80048 28 100.0 32 ............................ GAAGTGGACACTGAGAATCATCATTAAGAAAC 79988 28 100.0 32 ............................ CTGCATAATGACTTTCGCACTTATCAAAGCCA 79928 28 100.0 32 ............................ TGGCGGAGGGTCGTTACGATGCGTGAGTCAGG 79868 28 100.0 32 ............................ TCATCGATATGATTGACGGTTAAACGGTCAAC 79808 28 100.0 32 ............................ TGTACTGTCGCGTTCGGTGCCCAGTGTTAGGT 79748 28 100.0 32 ............................ ATGACGCAGTGCTGAGCGACGCTATACGGCTC 79688 28 100.0 32 ............................ GAAAGTATTATTTTTGACCACACAGACGCTAG 79628 28 100.0 32 ............................ GTTTGGCGATGGGTGTGACAGCCCTTTAAATA 79568 28 100.0 32 ............................ ACGCCTGCCAGCCTAACACCGCCTGCAACCAC 79508 28 100.0 32 ............................ TAACAAAGCTGCCACCATCGGTGGAAACGTCA 79448 28 100.0 32 ............................ CATAATAAGCGGCTGGCAAAACGCCAACTCTC 79388 28 100.0 32 ............................ GCACTGATTAGACGCGAAGGAAAGAAACCAAA 79328 28 100.0 32 ............................ ATCACAAGCCGAGTTTTCATTGTGTTCTAAGG 79268 28 100.0 32 ............................ GTTCAAAAATGGTGATTTAGTTAATGAATCTG 79208 28 100.0 32 ............................ TTAATCGCGTCTTCCTTGCTTGAAAACGATCC 79148 28 100.0 32 ............................ GTGATGCGCTTCACAAAATTAAAAACCCGCAC 79088 28 100.0 32 ............................ TAGATGGACTCTAGACATCAGAAATACACCTA 79028 28 100.0 32 ............................ AAAAATCCATCATCCCAGTACATGCCTACAGA 78968 28 100.0 32 ............................ TACAGGATTATTTAATCAAATTTATCAACGAT 78908 28 100.0 32 ............................ TGCTGCTTTCGCTGCTGCTTCTCGATTACCGC 78848 28 100.0 32 ............................ CGACAAGGGTAAGCCAGACGAAAAAGGGCAAA 78788 28 100.0 32 ............................ TGAACATGGCCTCAACCGAAGCCGTAGTTTCT 78728 28 100.0 32 ............................ AACTGGTTCCTTGCTATTCCTTTCCAACTAAG 78668 28 100.0 32 ............................ CCTTGGTGGTCGCCCAACCAGTTAAGGCGGTT 78608 28 100.0 32 ............................ GCTTGGGGTTGTTATGATCGCATCCGGTCGAT 78548 28 100.0 32 ............................ CACAAGGCGTGTTTAACCGTGCGGTTAAATCG 78488 28 100.0 32 ............................ GGTAGTTACGACATCAGGGATATTATCACACG 78428 28 100.0 32 ............................ AAGTGCAGCAAACCTTCGACCAACTGGCCGCA 78368 28 100.0 32 ............................ TTACGCCTTAACGAACGCGTCAACGCGTAACG 78308 28 100.0 32 ............................ ATTAATCGGCCCATTCTCCTGCTTAATTACAG 78248 28 100.0 32 ............................ AATGGGAGAACAGAGTAAGAGGCGACCACATA 78188 28 100.0 32 ............................ TTGGGCGCTAGACCTTAACTCTTCCCCTTGGT 78128 28 100.0 32 ............................ GAAAGCGCCAGTAATTTGCCTGCTGTGTTTCG 78068 28 100.0 32 ............................ GGTAACGATTGAAGTTCCAGGAGACAGCTCGC 78008 28 100.0 32 ............................ AAATGGGCGGGCAGCGTTTGGCTTGTAGTCCT 77948 28 100.0 32 ............................ ATCAGAAACTGTTGTTCCTGCTGTGGCGACTA 77888 28 100.0 32 ............................ TTGGTCTAACTTTTCGATTTGCGGACACTCAG 77828 28 100.0 32 ............................ GTCGAATGATTAATCCCGGCTGTTTTACTCCG 77768 28 100.0 32 ............................ ATACATACTTATCATTGTCGTTGCGAAAAGAG 77708 28 100.0 32 ............................ TTCAGCTTATTGTAGATGCGCAGCAGCCTGCG 77648 28 100.0 32 ............................ TCATATTCATCAAAATGCGCTATTGTGCAGCG 77588 28 100.0 32 ............................ ATCTCCGTAGCAACTTCGGGATCGCACGTTCC 77528 28 100.0 32 ............................ TTGATTCCCTCGTATTCACTTTCGGTTATACC 77468 28 100.0 32 ............................ GTATTGAAAGCGGAATGGCTACTCTGACAGCT 77408 28 96.4 32 ...........T................ TGGCATAAGGTGAGGTAATTTTCCAAGTGATT 77348 28 96.4 32 ...........T................ TGAACGGATACGCTCGTTGTTTCAGTATTTAC 77288 28 96.4 32 ...........T................ TTCCCAGCCCACAGCGAGCTCGCAAATCATTG 77228 28 96.4 32 ...........T................ AAGGGTTTAGACTTGGTATCAGTGTATAAATC 77168 28 96.4 32 ...........T................ AGCTTAAACAGTACGTTTTTGCCTTTGACGTT 77108 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 61 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCTGCAAAATCCGGCAAACCGCTGGTGGAGTGTTTAGTGGATTTGCAACAAAGCAAGCCGACAGCGTTGTGCACCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCTGCGAACCCCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTCAGATGCAGCAGCAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAATTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTGTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGAAGATTTTTATCCTAACATCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTATGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCTAGTTTTGCGTCAATAAAAATCCTTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGCCCGCTCCACCAGCACATCATTGGTTTTCTACGTTCGAGATAATCCGTGCGGTTATAGGCACTTCGAACTTGGTTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //