Array 1 1122852-1120887 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045952.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00008979 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1122851 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1122790 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1122729 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 1122668 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 1122607 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 1122546 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 1122485 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 1122423 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 1122362 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 1122301 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 1122240 29 96.6 32 ..........................A.. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 1122179 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 1122118 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 1122057 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 1121996 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1121935 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 1121874 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 1121813 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 1121752 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 1121691 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 1121630 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 1121568 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 1121465 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 1121404 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 1121343 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1121282 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1121221 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1121160 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1121099 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1121038 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1120977 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1120916 29 96.6 0 A............................ | A [1120889] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1140476-1138983 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045952.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00008979 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1140475 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 1140414 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 1140353 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 1140292 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 1140231 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1140170 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1140109 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 1140048 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1139987 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1139926 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1139865 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 1139804 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1139743 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1139682 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 1139621 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1139560 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 1139498 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1139437 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1139376 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1139315 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1139254 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1139193 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 1139132 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1139071 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1139010 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //