Array 1 2308804-2307005 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP012331.1 Bifidobacterium scardovii JCM 12489 = DSM 13734 strain JCM 12489 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2308803 29 100.0 32 ............................. CGCGCGACGCATGGATCAGCGGCCGCCTGCCC 2308742 29 100.0 32 ............................. GACACGAAGCAGCCGAACTACCGAAGGCATTG 2308681 29 100.0 32 ............................. CATGGCGTGCCGGACAGGGAGATCATGGCGTC 2308620 29 100.0 32 ............................. GGACCGTGGCGCACCGACTACGAGGCTATGGC 2308559 29 100.0 32 ............................. ACCTTCTGCATATCCGCAAGAAGCTCTTTGTG 2308498 29 100.0 33 ............................. CATTTCTTTTCATACCTGAGATGAATCCCGGTG 2308436 29 100.0 32 ............................. AATTTTTGACAACTGCCGCGGACGGCAAGCAA 2308375 29 100.0 32 ............................. AATTTTTGACAACTGCCGCGGACGGCAAGCAA 2308314 29 100.0 32 ............................. AAACGTGTCCTTCCCATCTCGTCGGCCATCTG 2308253 29 100.0 32 ............................. TGGGTATCCGCCGCATCTCCAACAGGGAGCTC 2308192 29 100.0 32 ............................. CATGCTCGCCCAAATCGCCACATCCCAGGAAC 2308131 29 100.0 32 ............................. TCGCTGGGCTGGTATCCGGTGAGGGTGGCGAA 2308070 29 100.0 32 ............................. CCCCTATGCCGGGTATGTGCGTTGCCTGACTC 2308009 29 100.0 32 ............................. GCGTCGAGAAGCCATGTCGTAGGACTGGTGGG 2307948 29 100.0 32 ............................. AGGATGCGTGCCCATCGCCATCGTATCCTCCT 2307887 29 100.0 32 ............................. GATAAGGCCCTATGGCGAGTTTACGACGGCAT 2307826 29 100.0 32 ............................. TGTTGGGCTTGAGCACGAAGTTCTCATTGAGA 2307765 29 100.0 32 ............................. GCATCAGATGGGCCCAAGGCAAAGCCGACCGG 2307704 29 100.0 32 ............................. AACATGGCGGCCAACAGCATCACATCCGACAA 2307643 29 100.0 32 ............................. CTCCGTCCCAACGTGACGTTCGGAGCGGTGCA 2307582 29 100.0 32 ............................. ATCGTGTCCGCCGCGATCATCGCGGACAAGCT 2307521 29 100.0 32 ............................. CTCGAAATGGATTTCCCCGTCGAACCCGGTAT 2307460 29 100.0 32 ............................. ACGCCCAGAGTGGGGAAATCCACGACGAATTC 2307399 29 100.0 32 ............................. TTGTTGATCGTGCCGGCGATGTTCTCCACGCC 2307338 29 100.0 32 ............................. CGAGGGAACGGGTGAGATCGCATATGCCGGTG 2307277 29 100.0 32 ............................. CGAGGGAACGGGTGAGATCGCATATGCCGGTG 2307216 29 96.6 32 ............................T GCCTCCCGATTCGGTGACTCCCAACCGGTCCG 2307155 29 100.0 32 ............................. TACTTGGATGCAGTGAAATTGGGCGAGGCTGG 2307094 29 100.0 32 ............................. TCGGACGGCGGCGTGTCGATGAAGGACAGCAT 2307033 29 96.6 0 .......T..................... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.8 32 GTTGGCCCCGCACGCGCGGGGATGATCCG # Left flank : CGGTTCGTGAGGATTTTCGTGCGATGCGGAATGAGGAATCATCGTGATCGTCGTGGTATTGACGGTTTCTCCTCCTAAGCTGCGCGGTCATCTCACTCGATGGTTGTTTGAGATCTCCCCGGGCGTATATGTGGGAAAGGTCTCTTCCCGTGTTCGAGAATTGCTTTGGGATCAGATTCTTGACAACATAGGAGAAGGGCGGGCCATCATGGTCTATTCCTCCAATAATGAGCAAGGATTGGAATTTCGGACACACGGGCAGGAATGGCAGCCTGTGGATTATGAGGGCCTAGAACTGATCATGCGACCGAATACCAGCCAGAAGCAGCAACGTAATGGTGCCAAGAAGACTGGCTGGAGTCGGGCTTCTCGCTATCGTCGGTACGGAAGATAAACTGATTACAGCGAAAAAATAAGAAATACAAGGATGCGGGATGGTGACTGTGGCAATCCAATTTTTTCGGTATTTCATTCCGCGGTTTTCCGCATAAAATAACACT # Right flank : TGCGTTGAAACGCGCCGGGATCGACAAGAGCAGCTGGCCCCGTGTGCGGGGATGATACGAATTGGGAGAAATTCCCTGAATAATTTCTATCCTCCGTTGGTCCTGCGCGTGGGAGATGATCTACACAATGGCGTTATGTGCCTGTTGGCTCTGCCCTCGCGAGAATGACCTAGACCGTGATGGTCGAGTGGCTCTCAGCGTGTTGTTATTAGCTCCGTGTATACGAGGATGGCTTGTGTAACGGTGTGTGCGTGGCTGTTATCGTTCCGAGCTTGCTATCAAAAAACATTAATATACCGAATCCCGAAACACTCTGTTCCATATCGCGCGACGCGCCAAGCCACGATTAACGCAGCTGTTCCCAGCGTCTTGGTAATGTGTGTCTCGTGAATCAAACGGCATCTGATAACGCTGAAGAGTTCGGGTTCCACACCGGGGACATCGTCCAGGAGTGGTTGTGGGACGACGACGTGGATGACTCCATCCGCGCCAAGATCGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCCCCGCACGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGCCCCGCACGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2324792-2322372 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP012331.1 Bifidobacterium scardovii JCM 12489 = DSM 13734 strain JCM 12489 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 2324791 29 100.0 32 ............................. AGGACAAATACTCGCTTCTTGCCGCAGAGATA 2324730 29 100.0 32 ............................. CCACGGCAATCGAACTCGGCAACGGCGAAGGA 2324669 29 100.0 32 ............................. GACGTGGACGACCTCGTTGCCTCTGGGCTGCT 2324608 29 100.0 32 ............................. CCCTCAAACGTGGACGGCCTCGGCCAGGCCTA 2324547 29 100.0 32 ............................. TGGCGGCAGATCGTGTATCCGGCCATCCTGGA 2324486 29 100.0 32 ............................. CTCGTGCACCGCAAGGGATACGAGGTCAAACC 2324425 29 100.0 32 ............................. ACCCGCGGCCTGCTCGAGGCCATCGCCACCAA 2324364 29 100.0 32 ............................. GTAGCCGTCCGGTGAAGTGAGGGGAACCCGGA 2324303 29 100.0 32 ............................. GCCTCTTCTACCGTGGCGCGGTCAACGACCTG 2324242 29 100.0 32 ............................. TCACGCACCTGGTTGGCGCTGACGGATTCGAT 2324181 29 100.0 32 ............................. AAGGCGATCGTGGCGATGGCCAGGGATATGGC 2324120 29 100.0 32 ............................. AAGCCGTTGCCCTCTGAGCTTATCGGCGTGCT 2324059 29 100.0 32 ............................. AACGACACATAGGTTTTGCGGTAGCCGCGCCG 2323998 29 100.0 51 ............................. AGCGCCCGCACATGGAGCGGGGACGCGTGGCGCATCACCCGTCGCGGCTCG 2323918 29 100.0 32 ............................. GAGACGCGTTCATGAGTGGCCGTCTCGCGTTG 2323857 29 100.0 32 ............................. AGTACATCGCGCGGTTCGCCGAATGAGAGGAG 2323796 29 96.6 32 ............................T GCCAGGTCACCGTGCACACCGCCTACCCGCCC 2323735 29 100.0 32 ............................. CCCATGTTGCGCAGTACGCCGGCAGCGTCCCG 2323674 29 100.0 32 ............................. CTCAAGGGCAATGCTCTGGACATGTGGGACAG 2323613 29 100.0 32 ............................. GCGTGGCGGTGGTTGTCCCGGGTGATGATCCA 2323552 29 100.0 32 ............................. CGCCGGCGATGTTCTTGCGATACTCGACGCGG 2323491 29 100.0 32 ............................. CACTTGCGATCCCGGCAGGTGGAACGCGCGTT 2323430 29 100.0 32 ............................. CGTTGACGTTGCAGCTCGCGGTGATCTCGCCC 2323369 29 100.0 32 ............................. TGTACGACTGCTGGGCCTGCGCCGTTGCGGCA 2323308 29 100.0 32 ............................. ATCTTCTTGGCGATGCCGTTGGCGACCATGAC 2323247 29 100.0 32 ............................. GTCACGGACAAGATGTTGGACTCCGGGTATCC 2323186 29 100.0 32 ............................. CTGACGCCGGTTGAACAGGTGACCGGCACCCG 2323125 29 100.0 32 ............................. GCCGAAACCCTCCAGCAGGTCCTCGCCAACGC 2323064 29 96.6 32 ......................C...... ACGGGGTTGCAGGCGATGAAGGCGGAGATCAA 2323003 29 96.6 32 .........A................... TTCAAATACGTCCCACTGTTCGGCTGGTGCGT 2322942 29 100.0 32 ............................. CAGCTCAACGCCGCGCTCACCTCGCTCAGGGC 2322881 29 100.0 32 ............................. GCTGCGTGCCGCCGGCAAACCGTTGCATCCCG 2322820 29 100.0 32 ............................. ACAATGGACGGAAGAGGAGAAATACTCACGAC 2322759 29 100.0 32 ............................. GACGCCGCAGTCAACGACGAGGCCACGCCGGA 2322698 29 96.6 32 ............................T GACAATGGTCTGATCGGCAGCCTGTTTACCGG 2322637 29 96.6 32 ............................T TCGCAGTTCTTCACCAGACGCATCTCGTCGGC 2322576 29 100.0 32 ............................. TTTGGCGTGGACAAGGATCACGCGAGCCTAGC 2322515 29 82.8 87 A...G.......C...A...........T GCATGATCCCGGTCTGTCTCACCCCAGCAGACGTTTACTCTGCACGCGCGATAACCCGTTTGCGGTCGCCTTCACGTTCGTGACTAT A [2322492] 2322398 27 82.8 0 .......T...--.....A.........A | ========== ====== ====== ====== ============================= ======================================================================================= ================== 39 29 98.7 34 GTTTACCCCGCATGCGCGGGGATGATCCG # Left flank : GCCGACCGCATCTCGCTGGTGCTGACCGTGCCGGCTGATGACGTGGCCAAGGTCGAGCAGTTCCGCGATCTGATCGCCCACGAGACGCTGGCGACTTCCTTTGAGGTGAAGGAAGGCGCCGAGCTCGGTGTGGAGGTTGTTAAGGCGTGATGCTGTAACGTATTTAGTGCTCGCAGGGATTTTGGATCAGTCCAAGGTCTCTGTGGGCACGCGCCATTTGTCTGCGGGCACGCGCCATTTGATGGTGCCAGCCCCTGCATTTGCGGGGATGATCCGTTAATGATGGCCTAAAGCTGATTATGCGACTAAACTCAAGTCAAAAGCAGAAGCGCAATGGAGTTTTGAAAACCAAGAAGAAGGCTGGCTGGAGTAATGCCTCTCGATATAGGCGTTTTGTCCGATGACCGGTAGCGAGGAACAATAGCACGAAGATTGGAGCCACTGTGCGAATCCAATTTTTGAAGGCCCAATGCCCAATAGTTTTCGCATAAAATCGGACT # Right flank : GACAGTTCCATGAGTATTAGCCATGCTCATGGGACATTTTATCCACTGTTTTCGCGATCTCAGCGTGCGTAGTATGCGTGCCAACGTCGAGTTGTCGGTGCAAGGGTGAGTAGTGAAACCGGTTGTCCACCGTTGTTAGCGGCGGAAAACGGCTATATATAGATCCGGTCTCGACGATCGCGCACCGACAACTCGGGTTTTCAGAGCATTCGACATGAGTTGTCAAACTTGTCGTTTCGTTTCCGGAAGATCTATACTCTCTTGCATCGGTGAAGAGTACCGGCGGCAATGGTGCCGTCCGATTCGCCGATCCTCAGTAGTTCGGAGGTATGCATGTCGAAAGACGCACAGACGCAACATACGCAATCGCAACCGCCGGCGCCGGCATCGTCCGGTGCCGGTTTGCAGAAAAGCCTCAAACTCATATTCGTCTACACGGTGGCCACCGGCTGCATGTTCACGTATGTGAGTTATTGGGATTCCGTGTTCTTCAGTTATTG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCCCGCATGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTACCCCGCATGCGCGGGGATGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //