Array 1 16142-14786 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOE01000007.1 Lactobacillus helveticus strain 313 NODE_29_length_26331_cov_31.805619, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16141 36 100.0 30 .................................... TCGAGAACGTCCTATTGCTTGAGGACCGTT 16075 36 100.0 30 .................................... AGAAGGTCTTGAAAATATTGCTAATGAGCA 16009 36 100.0 30 .................................... GGCAAGATCAGAACTTAATCAACTATCTTT 15943 36 100.0 30 .................................... GTCAGTGACACCGATTGTTTTAATCATTTT 15877 36 100.0 30 .................................... TTGGATAGTCATTTTCCTTAGGTTTTATTA 15811 36 100.0 30 .................................... TGCTGTATCTGCAAATTCTCCAGCATTTAA 15745 36 100.0 30 .................................... TGCAGATATATTGTTAGTTCAGTTTGGACA 15679 36 100.0 30 .................................... ATTACTTCATGTGTTTCTCCATTTAAACAA 15613 36 100.0 30 .................................... TAGGTAAGCCACTTTCATGATTTCAACTAG 15547 36 100.0 30 .................................... TCCCATGTGTTCTTATAGCGGTCTTTTTCT 15481 36 100.0 30 .................................... AAGCCAGATGATGAAACGTGGGAAAAGTTA 15415 36 100.0 30 .................................... GGAACATCAATTTTGTGTCCTAAACCATCA 15349 36 100.0 30 .................................... TCTTTTTTGGTTATTAAATCATCTGTTAGA 15283 36 100.0 30 .................................... CTACGAATGTAAGCGAATTGTGAACCGTCT 15217 36 100.0 30 .................................... GATTATCGTAGAAGGTTCAACCAGATTAAA 15151 36 100.0 30 .................................... TACACTAGGTTTTTAATAAGAAATAAGAAA 15085 36 100.0 30 .................................... TAAAGTATTAAACATTAGGAGCTTTCCCGA 15019 36 100.0 30 .................................... CTAAGAAATACGAGAAGCGTACGGTCTCAC 14953 36 100.0 30 .................................... CAGAACGACAGCCCAGTTACTAACACTCTA 14887 36 100.0 30 .................................... AAGTGAAAAAGGGTGACGTCTTCTTCACAA 14821 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Left flank : ACTAAAAATGTAATTGAAAAATATATGCCGCATATTTTGAAAAGCTATATTCAGAAGTTGGATGAAAAAAATCGAAATAAGATATTTTCCGCGTATCATAATTTAGAGTCTTTATTACAGGATTCTTTACTGTTAGAAGATCTACCGTTAGAAATTGATTTTAATGAAGATTTGAAAAAGCTACTAAAAGCAGAAAACTTACATTTAGATGTTAAATTATTAAAGGAACCATATGTTATAATTGAATCGATTCTAAAGATTCATCAGATGTGTAAGATAGATTCAGTTCCTGTGATATGTAATGTCGCTAATTACTTAAATTCACAGCAATTACAAGAACTATCAAACTTAGTAAAACAAATGAATATGAAGCTCGTTTTAATAGAATTCACAGATAAGGATTTTCTGATTGTTCCTAAAAATGCTGAATTTTTTTATATTGACGAGGACCTGGTTGATTGGTATTGATCATTAAATGAAAACTAGATTATAAAAAATCA # Right flank : CATTTTCATGAATAAAAGTTTGACCAGAGTGATGAAGATATTGAATTAATGAAAAAACAAGGTACATTTTTGTCACCAACATTGATTGCTGGACACCAAATTGCAGTTTACGGTAAAGAAAAGATGACAGACTTTTCATATCAAAAGATGTGCGAACATGTTGATGCCTTTTATGCGCACGTTGGAAAGACCATTAAATCAGGAGTAAAGCTTGCTTTTGGAACAGATGCTGGTACATTTATGAACCCACTTAAAAATACTGCTAAAGAATTAACAGAACTTGTTCGAGCAGGCGCAAGTAACTATCAAGCTTTACATGCAGCAGGATTGGGCTCAGCATAATTATTGAAAATTGATAATGAATATGGTTCTTTAGAAGAAGGGAAGTATGCAGACTTCTTAGTATTAAAAGCAAATCCACTTGAAAATGTTTCGGCAGTAGAGCAGGATGATAAGCAAGTTTATCAACACGGAGTGAGAAAGTTTTAAAATATTTTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 5516-5743 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOE01000145.1 Lactobacillus helveticus strain 313 NODE_100_length_5899_cov_38.832069, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 5516 30 100.0 36 .............................. TACTTTAACTCCTACATTGTCGGTATAATCGGTGGG 5582 30 100.0 35 .............................. TGCCAGTGTCCGCAGACAAGGAAACTGGCTTTTGC 5647 30 100.0 37 .............................. ACAAAAGAAATGTATAAGTGGCTATCAAACTTCTTTT 5714 30 96.7 0 ....................G......... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 36 GTTTTTATCTAACTTAAGAGAAATGTAAAT # Left flank : GTTTCCAAATCTAGGTCGACGAGAAGATTTGGTAAATTTTGAAGAAGTAAAAATCGTTGATGTAGAAAAAAAGGATGAAGACTTAACTGTAAATCATGGTGCGTATATACCAGTTGAAATGTCTGAAAATATCGGTCTTGAAAATGAAGGTATTGGATATAAAGGAACGCATTATTACTTAAATAAGGACTATAAACTGGTAACGATAAAAAAAGGTCAGACACAACGTCGATGGAATAAAGTTGAAGTTATATATGCTTCTGGGTTTACGGTTTATAAGAGTTACGTTGATGAAGATAATAATGTAGTGTTCTTAGTTTAAAATCTGTCGATGTCCAATAAGCAGTTTTTACCAGTAGATCGACAGATGTGATAAAGTCTTATGTAATAGTTTTTCTAGAGATTCCAATTAATTTAGACTCAAAATGATGATATGTTTTGGGAGGTCGATAGAAATCATATTACAAAGCATTGATGTATAAGACTTGGCAAGTGGAACT # Right flank : CGCTCTCTAATAGGGGGGTTGTACATATCCTTTATTTAACTTACGAGAATATACGATATTAACTGAAACTTGAAAGCACTAAAACTAACTGGAACTCTGATGGGTTCTGGTTTTTGGGTGCCTAAATTAGATTTTAGGCCGCTTCTTTTAGCTCGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 4537-5097 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOE01000093.1 Lactobacillus helveticus strain 313 NODE_48_length_16004_cov_39.111600, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4537 30 100.0 36 .............................. AAAAATGAGAAGTTTTCAACCACAACTTCAGTGACG 4603 30 100.0 37 .............................. ACTTGAGCATTAGTCATAGCAACCAACTTAATAAGTT 4670 30 100.0 37 .............................. ATTTAAATTCATTTTTATCAATGCTAACCACTAAGTT 4737 30 100.0 36 .............................. TGGCAAAAGTACAGCAACCTTGATTATTTGAATCGT 4803 30 100.0 35 .............................. TATTCGGTTTTGACAATAGCATTGAAACTAACGTG 4868 30 100.0 36 .............................. GAAACTACTGAGTTGCCATCGCCAGGCCCCCAATCA 4934 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 5002 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 5068 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 94.4 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : AACCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATTCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATTATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACTAGGACTGGTAGTTGCAACT # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //