Array 1 166669-164870 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHPU01000001.1 Escherichia coli strain 5959 5959_NODE_1_length_437773_cov_38.9113_ID_5017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 166668 29 100.0 32 ............................. AGGGCTGGTGTATTCGGGTAACTGGTTTGCTG 166607 29 100.0 32 ............................. GCTGGCCCCGCAGTGGTGTGAGCTGGTCGCAA 166546 29 100.0 32 ............................. CGAGAACAGATTAGTAAAACCCTTCTGACTGC 166485 29 100.0 32 ............................. TAAACGGTGCTCCAACGCGGCATTATCGCATT 166424 29 100.0 32 ............................. GGTAAGGCGAGCTATCGCGAAATTGCGGCCCG 166363 29 100.0 32 ............................. TCACGACGCCCGCCGCACGTTCGGCAGTGTGG 166302 29 96.6 33 ............................T GGCCTGGATTTTTTCGAACACCACCCGCTCGTT 166240 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 166179 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 166118 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 166057 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 165996 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 165935 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 165874 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 165813 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 165752 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 165691 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 165630 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 165569 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 165508 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 165447 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 165386 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 165325 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 165264 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 165203 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 165142 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 165081 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 165020 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 164959 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 164898 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 193817-192385 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHPU01000001.1 Escherichia coli strain 5959 5959_NODE_1_length_437773_cov_38.9113_ID_5017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193816 29 96.6 32 ............................A GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT 193755 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 193694 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 193633 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 193572 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 193511 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 193450 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 193389 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 193328 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 193267 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 193206 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 193145 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 193084 29 96.6 32 .........T................... CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 193023 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 192962 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 192901 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 192840 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 192779 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 192718 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 192657 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 192596 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 192535 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 192474 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 192413 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //