Array 1 2315514-2312244 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072181.1 Lacticaseibacillus paracasei strain HL182 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2315513 36 100.0 30 .................................... ACAAGTTTTATGAACGCTGAAAGCAACCAT 2315447 36 100.0 30 .................................... GACAGCAAACGAGCATTGGCCGAAAACCTT 2315381 36 100.0 30 .................................... CAATCAAGAACTTTTGGAACGGCTGAAGTT 2315315 36 100.0 30 .................................... ATTCCGATCAGGCTGTGAAGTCAGTCAGTG 2315249 36 100.0 30 .................................... CAGTAGCAACATAAACCCTAGTACCAATAA 2315183 36 100.0 30 .................................... CAACCTTACAGAAGTTCTTCAAGAGCGGTT 2315117 36 100.0 30 .................................... GGACGAGCAAATCTAACCGCTTCGGGCCAA 2315051 36 100.0 30 .................................... CCGAAGGATAAGCCAATATTTGTACCAGAC 2314985 36 100.0 30 .................................... GACTTCGAATGCTGAAGAACTAGCTGATCA 2314919 36 100.0 30 .................................... GGGGCACCTCGATATACGGGTACCCCATCT 2314853 36 100.0 30 .................................... CGAATTTAAGACGATGAAACTGCCGTATGG 2314787 36 100.0 30 .................................... AGAGTTTATTCAGCATGATAGTACCAAATT 2314721 36 100.0 30 .................................... TCAAATAGCCTCTTCGAAAGTTAAAGGAGG 2314655 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 2314589 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 2314523 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 2314457 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 2314391 36 100.0 30 .................................... CAACCTTACAGAAGTTCTTCAAGAGCGGTT 2314325 36 100.0 30 .................................... GGACGAGCAAATCTAACCGCTTCGGGCCAA 2314259 36 100.0 30 .................................... CCGAAGGATAAGCCAATATTTGTACCAGAC 2314193 36 100.0 30 .................................... GACTTCGAATGCTGAAGAACTAGCTGATCA 2314127 36 100.0 30 .................................... GGGGCACCTCGATATACGGGTACCCCATCT 2314061 36 100.0 30 .................................... CGAATTTAAGACGATGAAACTGCCGTATGG 2313995 36 100.0 30 .................................... AGAGTTTATTCAGCATGATAGTACCAAATT 2313929 36 100.0 30 .................................... TCAAATAGCCTCTTCGAAAGTTAAAGGAGG 2313863 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 2313797 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 2313731 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 2313665 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 2313599 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 2313533 36 100.0 30 .................................... AACAATTGAAGCGGTGGAAGCTATAGCCGC 2313467 36 100.0 30 .................................... ACGTCGCCGCGAATTTTCCGCATTACCGTA 2313401 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 2313335 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 2313269 36 100.0 30 .................................... CTAACCACTGGACTGGCTGGAGGGGTCGCC 2313203 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 2313137 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 2313071 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 2313005 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 2312939 36 100.0 30 .................................... GGGATTGTGGGCTGACGATAGATATACGCT 2312873 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 2312807 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 2312741 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 2312675 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 2312609 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 2312543 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 2312477 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 2312411 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 2312345 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 2312279 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 50 36 99.6 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //