Array 1 2308-179 **** Predicted by CRISPRDetect 2.4 *** >NZ_ORZR01000079.1 Xanthomonas fragariae strain PD 5365 isolate PD 5365, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2307 28 100.0 32 ............................ AGACGGTACAACTGCATACGCTAGAGGTATAG 2247 28 100.0 33 ............................ GTCATCGTGACAACCGAATACCGTGGTGTCTTC 2186 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 2126 28 100.0 32 ............................ TTTCAGATCCCTCGCCTGGGTGGCCTACTCGT 2066 28 100.0 32 ............................ GTCCATGCGGCCGGCAGCCAACAGGCTGCGAA 2006 28 100.0 32 ............................ TATGTCGCTGAGGGGTGATCCATACCTAACCC 1946 28 100.0 32 ............................ CTGGCTGCAACCGCTACTCCGTAATAACTAGG 1886 28 100.0 32 ............................ ACCAGGTCCCGGCCCTTCTGGGAGTTCACTGC 1826 28 100.0 32 ............................ AATGAGCAATAACTTTTGCGCTAGTGTTCATC 1766 28 100.0 32 ............................ ACATTATCTTTTCCGCGAATCAAAAGCTTAAT 1706 28 100.0 32 ............................ TTCCGGGGCAATCCCTTTACGCCTTCTTGGCC 1646 28 100.0 32 ............................ ACCAAACGAACTGGTCCAGGCTAGGATCCGTT 1586 28 100.0 32 ............................ TTCTGGGACCACACAACCTCGCCTGCGTGCAC 1526 28 100.0 32 ............................ GTTCAGGGCAGGCGAAAGGTCTCAGCGCTGCA 1466 28 100.0 32 ............................ GCATCGACCCAATGGCCGCCCTTGCCAGGCTC 1406 28 100.0 32 ............................ TGCAGATGCGCGCGACGAATATCGGACGTGTC 1346 28 100.0 32 ............................ AAACATGCGGGGATCAGCACGGCCATCGGTTC 1286 28 100.0 32 ............................ CGTAGCCGGGAACTCAGCCAACTGTGCTTGCA 1226 28 100.0 32 ............................ GATTTCACTGATTGATCTGGACACTGTGCAGC 1166 28 100.0 32 ............................ TCGAAGTAGGCATAAAGCACGTTGGGCAGCCG 1106 28 100.0 32 ............................ CAGACAAGCCAGACGCCGACCCACTGATAGTC 1046 28 100.0 32 ............................ CGTCGTTTCGCGTCGTCCACCGCAGCCAAGGT 986 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 926 28 100.0 32 ............................ ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 866 28 100.0 32 ............................ CATTAGGCTGCACAGTGTCCAGATCAATCAGT 806 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 746 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 686 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 626 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 566 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 506 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 446 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 386 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 326 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 266 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 206 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 100.0 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AAATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //