Array 1 13277-12169 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRVT01000214.1 Pseudomonas aeruginosa isolate 6-2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 13276 28 100.0 32 ............................ GTACCGCTCAGCGGCGAACCGATAGGCACCGG 13216 28 100.0 32 ............................ GACTTCTGGCTGTTTTCCATGCGCACCAGCGG 13156 28 100.0 32 ............................ TTCCAGGCCAGTTCCACCACCGGTACCACCGC 13096 28 100.0 32 ............................ CGTTCCAGGCGTGCCGCCACCACCATCGCCAC 13036 28 100.0 32 ............................ TCGATCAGCGCCGCAGGAAGCCCAGGACCACC 12976 28 100.0 32 ............................ AATTTCGAACAGCCGACTGATGCCATCATGGC 12916 28 100.0 32 ............................ TGGCGCGAAGCCGAGCAGCAATGCCGCGACGG 12856 28 100.0 32 ............................ GGCGTATCCCGATTATCGGTTGAGGTGATGTA 12796 28 100.0 32 ............................ AGGCCGGCGCCGATCTGCCCGCGACGAGGTAC 12736 28 100.0 32 ............................ TCCACCGGGTTTTTGTCAGTCCATCCGGCCGC 12676 28 100.0 32 ............................ TGTTCCGCCAAGCGCTACCGGCACCGTGTCGC 12616 28 100.0 32 ............................ TGGGTGGCGTGCCTGCTCAGTGGCTCCAGGTC 12556 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 12496 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 12436 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 12376 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 12316 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 12256 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 12196 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 683-2452 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRVT01000388.1 Pseudomonas aeruginosa isolate 6-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 683 28 100.0 32 ............................ ATTCGAAGAGCGGACGTCCGGCGACTTCTGCC 743 28 100.0 32 ............................ CGGAAAACTCGCCGGCCAGCGTGTTCTTCAGG 803 28 100.0 32 ............................ TGGACGAACCGCAGCAGCGGTACGACGTTGTT 863 28 100.0 32 ............................ TTGATAGGCTCGTACTCAGGCCCGGAAAACTC 923 28 100.0 32 ............................ AAGGCCCTGGCCTATATCGCGGGCGGCCTGAC 983 28 100.0 32 ............................ AGTCGCTCCGCTGGGACCTGGAACAGGACATT 1043 28 100.0 32 ............................ TGTATCCAGAAGGGGGCCGAGGTGATGTTCAA 1103 28 100.0 32 ............................ TGGGCGACGTGGTCAAGCAGCGAAGAGGCAGA 1163 28 100.0 32 ............................ AAACCGGGGGCGCGGGGAGCTTGTCCGGCTCG 1223 28 100.0 32 ............................ ACGCTGAGCTGTAGAACCGGCTCGTTGCGACC 1283 28 100.0 32 ............................ GCATCATGTACGGCAGCGAGATGCCGTCCGTG 1343 28 100.0 32 ............................ TGGATGGTGATGTAGTAGGTGTCGCCGCCGAT 1403 28 100.0 32 ............................ AGTGGGTCAACTTCACGCCAGCACCGTCGCTC 1463 28 100.0 32 ............................ TTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTA 1523 28 100.0 32 ............................ ACAGGGTGTTGTCGTTACTGCGCCAGGTTGGA 1583 28 100.0 32 ............................ TGCGTAACCAAGTGCATTTCATGGCCCTGATG 1643 28 100.0 33 ............................ CAGGAGCTGCTTCCGCCGCAGCTTGCTGCTGTT 1704 28 100.0 32 ............................ GTGGGGGCCATGCGGGGTGAGAGCCACTCCAG 1764 28 100.0 32 ............................ TTCGTCGTCGTTATCACGCCGCCGGCCGCGCG 1824 28 100.0 32 ............................ TTGAACCCCAGGTCGTTCTTCGCCAGCGCATA 1884 28 100.0 32 ............................ CAGTCGATCAGCCCAGCCAGCTTGGCGTCGTT 1944 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 2004 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 2064 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 2124 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 2185 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 2245 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 2305 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 2365 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 2425 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAGAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12251-11327 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRVT01000388.1 Pseudomonas aeruginosa isolate 6-2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12250 28 100.0 32 ............................ AGGTCCTGGGGCTTCTGCAAGTTGACGTGTGT 12190 28 100.0 32 ............................ TCGGCCAACAGCCTCCACAAGGGAGGGAGGGG 12130 28 100.0 32 ............................ ACAACGCCTTCGAAGACCTGGGCGGCTTCGTA 12070 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 12010 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 11950 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 11890 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 11834 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 11774 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 11714 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 11654 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 11594 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 11534 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 11474 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 11414 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 11354 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //