Array 1 41626-44355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNYP010000011.1 Serratia fonticola strain UPMP2126 contig00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 41626 28 100.0 32 ............................ ATCGGCACCGTGTCAACGCTGGCAGCCGGTCA 41686 28 100.0 32 ............................ AGCAACTCTTCGGCGTTTACTGCCCCGTTTGA 41746 28 100.0 32 ............................ TCGACCGCCCCCACGTCATCAGTAATATCATC 41806 28 100.0 32 ............................ TGAAACTTGCTTACGTAAATCCGGCAACTTGA 41866 28 100.0 32 ............................ CTATCGACAACCAGTGTCGCGCCCGGGTGGAT 41926 28 100.0 32 ............................ TGTATCAAGGTCTGCTGTATGCCGTAGAGTGC 41986 28 100.0 32 ............................ AGAAAGTTCGACGTGTCTGCCTCCCTGGTGGA 42046 28 100.0 32 ............................ AGGCTCGCATTCAGGTCGATGCATTCAAAGCA 42106 28 100.0 32 ............................ AGTACCGCTCAGAGTCCAAGAAGCCGATAAAC 42166 28 100.0 32 ............................ ATGAGGGCCAGTCACGAAGGAAGGCACTACGG 42226 28 100.0 32 ............................ AATGCCATTGATAGTGATGTTGGGAATATTTC 42286 28 100.0 32 ............................ ATCAGCTCGTCTGCGGTCTTGAACTTCGGTTG 42346 28 100.0 32 ............................ TGCCACCGCCACCAGTGTGGATGGCTGGAGCT 42406 28 100.0 32 ............................ TTGGGGTCGCCGGACGAGTCAACGTATTCCTC 42466 28 100.0 32 ............................ TGAAGCACAACATTGATCCTGCTTATCGCAAC 42526 28 100.0 33 ............................ TGCACCGCTTCGGCGGTTTTTTTATGCCTGCAA 42587 28 100.0 32 ............................ TTTTACGATTGAATAAGAATTGGGGAGGAGAG 42647 28 100.0 32 ............................ TTGTTGAGCGCTTTGCCGAATACGATCAGACC 42707 28 100.0 32 ............................ GCACTGGAAGCCTGCATGCCATGGGAAACCAC 42767 28 100.0 32 ............................ ACGTTTTCGACGCGTGCGCCAGCGTCAGCGGT 42827 28 100.0 32 ............................ TGGTATGGCCGCAATGCTCTGCGTTTGTTGCG 42887 28 100.0 33 ............................ CACGTTATGCGGCATACCTTCGCCAGTCATTTT 42948 28 100.0 32 ............................ TAATCCAGATGGGCGTTGAGGCGCTTAAAAAC 43008 28 100.0 32 ............................ GTAAACAATGGCTTAGGAAACCCGCCGTTATT 43068 28 100.0 32 ............................ AATACCGCCGCTTATGACCGTAGCGTCATGAT 43128 28 100.0 32 ............................ TGTTTGATGATGACGCGGCCAGCAACTGGGGC 43188 28 100.0 32 ............................ AGGGAGCGAATAAAGCAGGGGCTAAAAATGGC 43248 28 100.0 32 ............................ AAAAACATTTAACGCTTCTTGAATATTCACCT 43308 28 100.0 32 ............................ ACTTATCGAAGGTTCCTTTGATATCACTTTAA 43368 28 100.0 32 ............................ AACAGGCCCAAGCGGTTGTCCGTAGAACTGGA 43428 28 100.0 32 ............................ GGTAGCGTGCCATGGAAAGTGCTGCTCACTGA 43488 28 100.0 32 ............................ TGGACGCGCCTGCGCTAACTGAGCTACTCGGC 43548 28 100.0 32 ............................ TTGAACGCCTTGGTCACAGTCAGCATGGTGTT 43608 28 100.0 32 ............................ AAGACGGGGCCAAGACCAGCGAAGCGAAGCTG 43668 28 100.0 33 ............................ AACAGGCCCAAGCGGCTGTCCGTAGAACTGGAT 43729 28 100.0 32 ............................ TACAAGGCATCATGATCCCAACCCGGCAAATT 43789 28 100.0 32 ............................ TCTTCTGCTGCTCGATCTTGAGTTGTTCCTCG 43849 28 100.0 32 ............................ AAGGTCAGCGACCATACCAGCGTTTACCGGGG 43909 28 100.0 32 ............................ TTTTGACAAGTGTAGAATATATCGCTCCCCTT 43969 28 100.0 32 ............................ CGCTTCCCGGCATCCGGACACGTCCTTCACTT 44029 28 100.0 31 ............................ ACAAAGCCAGCTCTGCAGCTGATAGTTCACC 44088 28 100.0 32 ............................ GGAATACTCCCGCGTGATAGCTTCGGTAACCG 44148 28 100.0 32 ............................ TCGACGTGGTGCGCTACAAGCCAATCCATGCG 44208 28 100.0 32 ............................ CAGGCCGTTGGCAACCCGTTGGCCTCGAAAAT 44268 28 96.4 32 ....................T....... AGGTAACCGCTGAAGCCGGTGGCGGAGTAAAT 44328 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATAGCAAAGGCAACAGTGTGGGTTCTGTGGGGCAAGGTGGGCAAATGTATGCTCGTGTAGCGGAAGACAAAGGAGAACTGGTTGTGAAGTGGGGCGCCGGTAGTGAAATGCAATGTACTGTGGGGTATATGCTGATGCCGCAGGCAAAAAACAGTCCCGTTTCGGCGATCCAGGTCTTCGATTCAGTTTGCCAATAGAGAACAGCACTCTTAGTTATCAATCTGACGGGAGCTACGGCTTCCATCTCCTTTCCCTCCACTGAAACTCTTCCGCACGGTGGTATACAAAAGAGCTGCATTCGTCCCTTGGTAGCTCTGTAATCATCCTGCGAACCTGTATCTATCCCTGATACTCGTAGCGTCCCTCTAGACCCTAATTTTGAAGCCATTCATAACCCATTGATTTTAAAATAAGGATAGTGAGTGGATGAAAAAAGGGTTTTCCGGAGGGTTCCAAGGTTATTGTTTAAGTAACAGAGAATTAGCGCTAGGATGTAACA # Right flank : AAGCCAGCGCGAGCTGGTTTTAAACTTGCGGCAGTTCATTGGCGCACCGCCAACTTTCCACTCCAAGATTGTTTTTATTATTAAGCTAACTGATATAAATGATTCATAATTTTTATCTATCTCTATGATTCATCATCAATATAAATTAAATGAAAATCTAACATCAATCACTCTATACAGTGAGCCTATTATGTTAAAACAACAATATCGCGTTGGCATCTGTCATAGGTAATCACGTCTTGGATGATTTTATGGCATAAAGCAGGGATGTTTTCATTTAATGCAAAATCAATTTTCGCCTTCTGATCTAAAAACCATCCTGCATTCAAAGCGTGCGAATCTTTACTACCTGCAGCATTGCCGGATCTTGGTCAACGGCGGCAGGGTGGAGTACGTTACGGATGAAGGTAAGCAATCCTTGTATTGGAACATCCCGATCGCTAATACCACAGCTGTAATGTTGGGGACGGGAACTTCTGTTACTCAAGCGGCAATGCGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52891-54539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACNYP010000011.1 Serratia fonticola strain UPMP2126 contig00011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52891 28 100.0 32 ............................ TCATTCTGGAGACGCTGAAGTAAACCCCAGTT 52951 28 100.0 32 ............................ TGGATGCGCTGTGCCAAAGTTCGCTCACCATC 53011 28 100.0 32 ............................ TCATGGCGCGAGCATGGGCTTTTGCTTCGCTG 53071 28 100.0 32 ............................ TCAGACTACTGCTGGTAAAGTTGCCTCGGATA 53131 28 100.0 32 ............................ AAGGCATTGACCATGATTGACTACAAAGCATC 53191 28 100.0 32 ............................ CGGACGGATAAAGCAGATTTCCGCCCCATCCG 53251 28 100.0 32 ............................ TAGCCACCGCAATGCGCCGTGACGGGCAAATC 53311 28 100.0 32 ............................ TGCTGATCCTGGATGATATCGGTGTACAGCGC 53371 28 100.0 32 ............................ TATGCGCCTCAGAAGGATGATGCGCCTCATAG 53431 28 100.0 32 ............................ AGTAGAGGAGCTCACCCCGGCGATCCTGAAGC 53491 28 100.0 32 ............................ TGCAATGTCGTCTTGATGACGATGATGATTCA 53551 28 100.0 32 ............................ AACGAATGGCGCGCGAGCGCGTGCTGACTTTA 53611 28 100.0 32 ............................ AGTGCAGCCTAAAGGGCTTGAGGTATCTGTAA 53671 28 100.0 32 ............................ GGCAGCATCATCGACGGGTTCAAGATTTTAAA 53731 28 100.0 32 ............................ CCGTTGATTTCTACCATCCCCGTGGCCAGATT 53791 28 100.0 32 ............................ TATTCCCTAGCGTCAATTACTTAAACGTGCGG 53851 28 100.0 33 ............................ TCGAAAATGACTAAGGCCATGTTTTCCGATTAC 53912 28 100.0 32 ............................ CACCAGCGCCCCGATTGTGTCCCCTACTTCAA 53972 28 100.0 32 ............................ GCGATGCTCGCCGCAGTACGCTGGCGGAGCAG 54032 28 100.0 32 ............................ CTAAACCCGCTGACCTGATCCGGCATATCGAG 54092 28 100.0 32 ............................ TGCAGGGGAGACTTTCAGCAGACGGATAGAAA 54152 28 100.0 32 ............................ AGCATCGCGCACTGGTCTTTCGATAGGCGTTT 54212 28 100.0 32 ............................ CTATCCGATGGAATGCATCCAAATGGCAAAAC 54272 28 100.0 32 ............................ CCGCACGTTACGCAACCTGCAACGCCGTTACC 54332 28 100.0 32 ............................ GGAAATCGTTGCCGGGTATGGCGAGTCGTCTG 54392 28 100.0 32 ............................ TCGCAGACGCGGGGTTTTTTTACGCCTGGAGA 54452 28 92.9 32 .....................G.....G GGTTTACCCCTGAGAAAGTTAGAGCGGCTTTC 54512 28 71.4 0 .CC....A...C.C...T......A.C. | ========== ====== ====== ====== ============================ ================================= ================== 28 28 98.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGGTGCTCACTGCCTTTGAGACTTTACCTTGGCGTAAAGGATTACGGGATTACACGGAATGTGGCGAAATTCTGCCGATACCCGCTAATGTAAAATATCGTACCGTGCGACGAGTGCAGCTCAAAAGCAGCGCCGAGAGATTACGTCGTCGCTCTGTTCGCAAGGGATGGGTAACTCAAGAAGAGGCTCGTCTGCGTATTCCTGATGCCGTTGAGAAACGCTCAGCATTGCCATTTATTCGTTTAAAAAGTCTATCCAGCGAGCAAACCTTTTTGTTGTTTATCGAACAAGGCAAGATTTGCGATAACGCAACAGAGGGGGTATTTAGTGCTTATGGTCTAAGCGCAACGGCAACCATCCCGTGGTTTTAACCCTAATTTAATGACTGATTCTAACCTATTGATTTTAAAGGTTGGCGTCAGTCATGTTTAGAAAAGGGTTTTTGGGTAGGGTGGCGGGATTCTATTTTATTAACAGTTAGTTACCGTTAGCATGTAACA # Right flank : ATTAATCTGGAGAGGGAGGCGCGTTGAAGGTCTCAATCTTCGCGTTTACGGAAATAATGTCCACAGTGGGGGCAGATCAGCGTGACGTTTTTTTTCACCTTACTGCGATTTTGCGGCGAACTTTTTGCGCATTCAGGGCAGGTGACATCAACGGGGGCGTCACCGAATAGCTTAAAAGCATCAAAGAAAGACATCTTTTTCACCGGGTAGAGGTAGGAGGAGTTCAGTGTACCTTTATCGCTCGATGATAGCTCCACATAGATTGGTAAACCACTGGTAGAGACGTAGCTAGCTTCGCGCTAAAAAGGGAGTAACAAGTGGGGAGAAGGGGCGGAGGGTAAGAAAAAAGCCCCGCAAAAAATGAGGGGCAAACACAACAACACCAGGGAAATCGTTGATAACTAATCTGCTATTACTATATGTTTTTTGAGACGAGAGTTCATCAATAAATTGCTGCATTATTGCAACATTATAGTTAATTAATTTGTATGCATTTGGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //