Array 1 18459-22876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYW010000711.1 Frankia sp. CNm7 NODE_31_length_37104_cov_18.302239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18459 28 100.0 33 ............................ CGGCGCGAACACCCCCGGAACCGGCTCCCCGGC 18520 28 100.0 33 ............................ AGCACCTCAGGCAGTTCGACACCTCGGCACGGG 18581 28 100.0 33 ............................ TCGTGATCCTTCAGCCGGCCCACCAGCCGGGAG 18642 28 100.0 33 ............................ AAGGCCGCAACACAGATCGTCCTCTGGGCCCAG 18703 28 100.0 33 ............................ CAGGTAGCGGGCGCTCTGGCTGGGGTCCACCGC 18764 28 100.0 33 ............................ GCCACCTCGAGCGCGCGGCGGCCCACTGGCCGC 18825 28 100.0 33 ............................ CATTCCCGAGCTCCATGCGAACCACAGGCCAGC 18886 28 100.0 33 ............................ GGCGCGTGACCCCCGTGAAGCCGTCGGAGAAGC 18947 28 100.0 33 ............................ CCAAGCTGCAACTGGACGAATGGCAACAGCATG 19008 28 96.4 33 ...............A............ TCGACCTTGAGGTTCTGGTTCCCGACGAGCTGC 19069 28 100.0 33 ............................ CACAGGCACGACGCCCCGCCGTACATCAGCAGG 19130 28 100.0 33 ............................ CAGGCGAAGGCCCACCGCGCCTGGGCCGACGAC 19191 28 100.0 33 ............................ TCGGCGAGCTGCAGCGGCCAGCCCCACGCCGCG 19252 28 100.0 33 ............................ CGTGGCGGGGAGGGTGCGGTGTGCTCGCGGATG 19313 28 100.0 33 ............................ CCCTGCGTCATCGCCGCGACCAGCGGAGCCGCG 19374 28 100.0 33 ............................ AAGGCAAGAACGCGCGCGGCATCCTGATCGGCG 19435 28 100.0 33 ............................ CGCCCGTGAGGCGCCCAGCCATCCACCACAGGC 19496 27 92.9 33 ...............A......-..... CAGCCCATCGCGGCTCTTTGTCCAGACGTCGCC 19556 28 100.0 33 ............................ CGGCCGAGAGATCGTCACGGCGATCGGCAACGT 19617 28 100.0 33 ............................ GTCATCAACGGTCCGGTGACGTTCCGCGCCGGG 19678 28 100.0 33 ............................ ATCAACGGGGACACGAACGGTCGCGGTGGTGTG 19739 28 100.0 33 ............................ GGCTACCGGGGCGCAGTGATGCACTCCAGTGAG 19800 28 100.0 33 ............................ GCGGTCGCGATCCCGGTGATGGCGGCGATCGCG 19861 28 100.0 33 ............................ TGCGCCGCGGCGAGACCCAGCTTGGTCGGGATC 19922 28 100.0 33 ............................ TCCATCGCCGGGATGTCCCGCTCGGTCAGGAGG 19983 28 100.0 33 ............................ TCACCGCCGGCCGGATCATGGCCCTGACTGTCG 20044 28 100.0 33 ............................ CCGCCACCGCTACCGCCACCGGGCGCGGCGTAG 20105 28 100.0 33 ............................ AGCTACGGGCACACGATCAGTCGCGACCAGACG 20166 28 100.0 33 ............................ GTCGGCCTGGTCAACGGGCATGACGCGGTCCGG 20227 28 100.0 33 ............................ CTCGTCGTTGAGCCGGCCGAAGGCGGCGATCTC 20288 28 100.0 33 ............................ GACGTCGCGGCGCGCGGCGACGACCATGGCGAG 20349 28 100.0 33 ............................ CACAGGGCCACCAACATGGGCCGGGCTGCGGTG 20410 28 100.0 33 ............................ GCCCCGGCCGTGCCGGCGGTGTCGCCAGCCGAG 20471 28 100.0 33 ............................ CTGCGCCGCCTGCTCGGCGAGACCTACCTGTGG 20532 28 100.0 33 ............................ CCTCGGGCTGACCGAGGAGGACGGCACCCCGAA 20593 28 100.0 33 ............................ GAGCACCAAGCGGGCCTGTCCGCCGCCATGCAG 20654 28 100.0 33 ............................ CGATCTTTCTTCGAGTTCAAGTACCTGCGGGAG 20715 28 100.0 33 ............................ GGACGGCGCCGACTACGCCCGCGGCCAGAAAGA 20776 28 100.0 33 ............................ CTCCGCCCCCGCGCCACCGCCAACGGCGATGGC 20837 28 100.0 33 ............................ GACTCGTCCCTGCGCCCGCTGACCTGGCACGAC 20898 28 100.0 33 ............................ GCGCGGGCAATAACACCCTCAGCATCCCGACAG 20959 28 100.0 33 ............................ GAGTTCGCCTACGGCCGGCTTCGCGCGGTCACG 21020 28 100.0 33 ............................ GCGGCCGGGCCGGTCGAGACCGACGAACCGCCG 21081 28 100.0 33 ............................ GGGGCGCTGTCGGACGTCACCGCCACGCCCAGC 21142 28 100.0 33 ............................ CGCGGTGTCGGTCGGACGCGCGGCCCGAAGTGC 21203 28 100.0 33 ............................ CAGGCGACGAAGCCCCTCGGCATCGCCGAGCAC 21264 28 100.0 33 ............................ AGGCCGAACTCGGCCGCCCAGGCCCGCAACTCC 21325 28 100.0 33 ............................ GACCTGCTCAAGGACACGGAGGGTCGCTACTAC 21386 28 100.0 33 ............................ CACCACAGATCAGTACCGGCGGGTAATAAACGC 21447 28 100.0 33 ............................ TCCGTCCGGTAGCCGGTGATCTCCCCGGCCCGG 21508 28 100.0 33 ............................ CCCTCGGCGGACGAGGCCCAGGTGAAGAAGCCC 21569 28 100.0 32 ............................ CGGGCGCGCTGACGGCGGAGCTTCGCCTGGAT 21629 28 100.0 33 ............................ GCGCGCGGCGACATGGACGCGGCCGGCGCCGCG 21690 28 100.0 33 ............................ CCCCTGTACGCAGGCAACGGCCTCGGCCCCAGC 21751 28 100.0 33 ............................ CCTGGGAAGGTCAGCAACGCTGTCATCAGCCGC 21812 28 100.0 33 ............................ GACATCATCCACGGCCAGATCACGATCAGCCCG 21873 28 100.0 33 ............................ GCGGTCGTCGTCTGGCCGTACACGCCATAGGCC 21934 28 100.0 33 ............................ CGTGATGTAGCTGCCGCCACGTTCCAAGCCACC 21995 28 100.0 33 ............................ GCTGCGGTCGCCTCGAAGTCCGGCGTGATCGAG 22056 28 100.0 33 ............................ ATGCTGAACCCGCCGAACTCCGTCACCCGGTAG 22117 28 100.0 33 ............................ ACGGGCTCGGGCTCGCGTCGGGTCTCGCGTGGA 22178 28 100.0 33 ............................ TCACCTACCGTGATAGTCGTGATCAACGCTCTG 22239 28 100.0 33 ............................ TTGACCGCCGGATCGACGGTTGGAAGACGGGAG 22300 28 100.0 33 ............................ CGCACCCAGCCGGCCGCGATGTCCGCGGACGCG 22361 28 100.0 33 ............................ TGATGTCCGCACGCCGTCCGGTCCGCATCGCGA 22422 28 100.0 33 ............................ AAGATGCGACGTTTCCCGTGTGGCTGTTGGTCA 22483 28 100.0 33 ............................ CGGGTGCCCTCGTGGTGCAGCAGGGCGATCGGG 22544 28 96.4 33 ............G............... CTTGACCTCGACCTCGTACTCGACGTCGAACGG 22605 28 100.0 33 ............................ CTCTCGGCAAGCCGGACGTGCCAGGCGGTCGGG 22666 28 100.0 33 ............................ TAAGCGGCGACGGATAGTGAACCGAAACGGCCG 22727 28 100.0 33 ............................ CACCCGACCGGTGTGGCCGGTGAGACGGCTGCG 22788 28 100.0 33 ............................ GCCTGGACGACGCCGAGCGTGCGCGCGTGCAGG 22849 28 78.6 0 .....................AAT.CGT | ========== ====== ====== ====== ============================ ================================= ================== 73 28 99.5 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGAGGTGACCGGCCGCGGGGTCGAGGTTCGCCGTGTTCGGTGGTGTCGGAGCCGGTGACCGACTACATCAGGTTCGAGCACGCGACGACCGCGTCGAACGTCAGCGCCGGGGAGCAGGCCCGTTGGCTGCCCCGGCACCTGGCCACCGGCCTGTTGTTCCCGGCGAACGACTTCTGGGTATTCGATGGCCGGCGGGCCCAGTTCAATTACTTCTCCGGTCGGGGAGAGTTTCTGACGACCCGTCTGTCACCCGACGCGGTGATTGCGACGCAGTGCGCGGTGGCGTTCGAGGCCGCGTGGGAGCGTGCTGTTCCGCACGAGACGTATGACCCGGTCCAACACTGATCGCCCTCACGTCGGGCAGTCTTTCTCCTGTGCAGCCGTCCTCCTCCAATGCCCAACAGGCCCGTCAGCTTCCCGCGGACCGGCTTCGTGACCTGCGCCGCGACGCGGCTCTGACCACGATCGAGCTGGCTGTCGGCGCAGGTAACGTCACGAGC # Right flank : TCAACCTGATTGGGACAGCGTTGTCCAGGAATTAGCTACTGGTCGCGTCTGAATCTACTGGCTGGTCTTCCTCGTGCTGGGGTCGGTTGATCCAGGCTGGCTGGGGCGGCTTCGGCGGGGTCGGGGGCTGGCGGACGAACCTTTCGGGGTGGGCGGCGTAGGCCGCGTCGAGGACTCGGGCGCGGGCTTCGCGGACGAGGGCCGCTTCGCCGTGGTGGACGGTCGCTGGGGTGAGCAGGCCGATCCCGGAATGCCGGTGATCGTTGTTGTAGTAGTCGAAGAATGTCCGGCACCAGACCCGGGCGTCCTGCAGCGTCGCGAACGAGGACGGAAAGTCGGGCCGGTATTTCAGCGTCTTGAAGTGGGCCTCCGAATAGGGGTTGTCGTTCGACACCCGTGGCCGGGAATGCGACCGGGTGATGGCAAGATCGGCGAGTAGCAGCGCGACGGTCTTCGAGGTCATGGAGGTGTCGCGGTCGGCGTGGATCGTCAGCTGGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 24549-25064 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYW010000711.1 Frankia sp. CNm7 NODE_31_length_37104_cov_18.302239, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 24549 28 100.0 33 ............................ CGGTAGAAGACGTCCTGGACGTGGTAGCCGTAG 24610 28 100.0 33 ............................ CGGAACACCCTCGGGGCCGGGCCGGGCCGCGAG 24671 28 100.0 33 ............................ GCCAATCATTGGCATTTATGACTGTTCTCTGCT 24732 28 100.0 33 ............................ GCCGCGGTCGTCCAGCCCAGCGCCAGCGCGGTG 24793 28 100.0 33 ............................ ATCAGCCCGTCCGCCATCGCCTCGGCCGAGGCG 24854 28 100.0 33 ............................ GTCTTACGCAGCGTCAGGTCGTGGCGGTCGCGC 24915 28 100.0 33 ............................ GAGCTGCGCCGGAGGTTGGAGACATGAGCCCAG 24976 28 100.0 33 ............................ GTGCCCTGTCGACGGCGCCGGGCACCGTGGTAC 25037 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CACGAAGCGGGCCTTCGCCAGCTCCTTCTCCAACCGCTCCTTCTCCGCCCGCAGCCTTTCCATCTCACGGTCACGGTCATCCACCGGCGGGCGGCCCTTCGGCTTCGACAACCCCGCAAGCGCTCCCGCGTCACGCGCCTTACGCCACTCCACAATATGGGCTGAGTACAGCTTCTCCCGGCGCAGGATCGCACCCTTCGCACCCGGGCCCGTCGCCGCCTCGTACTCCGCGAGAATCCGCAGCTTGTACCCCGGCGAGAACTGCCGCCGCCGCGCCTTCGGCTCCACCTCAGGATCCGGCCGCCGGCCACCGTCCTCACGCTCGTCCACACGGACATCATCGACCAGGCCCAGCCCGGTCGTCACCGCCACCACCACGATCTCCCTCTCCCAACTCCGCCCATGTCATGAGATACTAGGCCTAACCTGTCTCAAGTCATCTTGACGGGTAGGGGGGCGGGGACGACGCGGCGCCGCGCGTACGACTCGGTAACCGAGCC # Right flank : CACTTGCTGAGCTGGGGGTTTGGCGCCGGGTCTGGACAGAAAATATCAGTCCGTCGTGGTCGAAGGATCGTTGCAGCCACAGTCGGTCGGAGGCGGTCCCCGCTCCATGGGCGCCAGGCGAAGCCATTTGTGCGTCCATGCGACCCCGGCGTGATCGAGGTGCGCCACAAGTGATTCAATGCGTGCGTCAAAGCCGACGACGGGGGTGGGCGCCGTGCTTGATGCGGCCATGGCTGTGGTGTGGGGGAAGTCGGATGCGCAGGGGTCGCCGCATCTGCTGCTGGGTCATCTGTTGGATACGGCGGCGGTCGGTGAGTTGATCTGGGATCGGTTTCTGGCTCCGGTGGTCAAGGGCCATCTGGACGAGGTCAGTGGCGGGCGGGGTCGTTCGTTGTTCGCGTTGCTGTGCGGTCTGCATGATGTGGGTAAGGCGACGCCGGCGTTTCAGTCGAAGGATGGCGCGCTCGCCGTGCGGGTGCAGGCGGCTGGTCTGGGTTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 37057-34833 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYW010000711.1 Frankia sp. CNm7 NODE_31_length_37104_cov_18.302239, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37056 28 100.0 33 ............................ CGGGTCTCCGCGTTCGCCCGCCGGACCTCCGTG 36995 28 100.0 33 ............................ ACGGGCGGCGGCGCGGGCGTCCGGTCCGGTCAC 36934 28 100.0 33 ............................ CACTAGCGGAACCGGTAGGCGTCCAACCGTGGG 36873 28 100.0 33 ............................ TCCGAGATCGCCGCCGCCAGCGCTGACCTGCTG 36812 28 100.0 33 ............................ TTCGCTCCGCCCGCGCTGCGCGCGCTCGGGAAG 36751 28 100.0 33 ............................ GCGAGCGCGGCCTCGGCCTCGCGGGCGGCCGCA 36690 28 100.0 33 ............................ TGGGGCCGAGGGCGTACCGGCCGCGCACGCCCC 36629 28 100.0 33 ............................ ACCTACTACGGCCTGAAGGTCCCGAAGTGGGAG 36568 28 100.0 33 ............................ TATGAGGCGCCGAGCGGGGTGCCCACCTATAAC 36507 28 100.0 33 ............................ ATCGGCCCGTCCGCCATCGCCTCGGCCGAGGCG 36446 28 100.0 33 ............................ CCGCACAGCGGCGAGGCGATCCCGCTCGAACCG 36385 28 96.4 33 ................T........... GTCAGCAACCTGCGGCTGTCCTCGGAACTCACG 36324 28 100.0 33 ............................ GCGGCGCTGCTCGGCACGAAGGGCGTGCCCAGC 36263 28 100.0 33 ............................ GGCGGCTACCCGAGCGGGGGAGAGGTTGTGGAC 36202 28 100.0 33 ............................ CGGTCCGGCCGGTCGCGCCCGCTCGGCGAGCAG 36141 28 100.0 33 ............................ TCGCGGATGGCGGTGATCAGGTCGTCGATGTCG 36080 28 100.0 33 ............................ CTCCGCGACCAGTGCACGGCGGCCGGTGTCCCG 36019 28 100.0 33 ............................ TAGAGAGCCACCTCGAATACCGCGCCCGCCTGA 35958 28 100.0 33 ............................ TAGAGAGCCACCTCGAATACCGCGCCCGCCTGA 35897 28 100.0 33 ............................ TCGATCCGGTGGGTCGGCCCGGACAATGAGACG 35836 28 100.0 33 ............................ GTGAGCGACTGGATCGAACGATCCAAGGCCACC 35775 28 100.0 33 ............................ GATGTTGTGCCAGGAGCAGGCCGTGTCGAAGGG 35714 28 100.0 33 ............................ AATCATCGACCGTTCAAGCGAGTCCGCGAACTC 35653 28 100.0 33 ............................ CCGTCGAACGAGCCCGTGATCGTGGGCACGTCG 35592 28 100.0 33 ............................ CTTCGATGTCCCCGGCCTCGGCCAGCAGGTCGG 35531 28 100.0 33 ............................ GCTTACGTACAGTCGATGGCCTCGCTGTTGGAG 35470 28 100.0 33 ............................ ACGCCCACGGAGAACGTCACGACCGCCACGCCG 35409 28 100.0 33 ............................ GTCGTCCGTTGCCCGGGTGAGCTGGACAAGCCG 35348 28 100.0 33 ............................ CCGTGACCCCGGCGGAAGGCATCGTCATCGACG 35287 28 100.0 33 ............................ CGCCCCAGGTCGTCGGGGCTGTCCAGCGAGTCG 35226 28 100.0 33 ............................ CTCGTTGATGTACGGCAACATCGTCGCGCCCAG 35165 28 100.0 33 ............................ GCGGCCGGGTCCATCCGCAGCAGCGCGTCCGTG 35104 28 100.0 33 ............................ ACGACCCGGCGGCGGCGGCCCAGCATCGGGGCG 35043 28 100.0 33 ............................ CCGACGACCTTGAGGCAGAACCGCAGGACCACG 34982 28 100.0 33 ............................ GGCGGCCATCAGGTACCGCCGGCGGTCGCGGGC 34921 28 100.0 33 ............................ GTCGTACCGGCCGGACCAGGCGGTACGGACCTG 34860 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.9 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : GCGGGCGGGGACGACACGGGCGGCGGCGCGGGCGTCCGGTCCGGTCA # Right flank : GCTTGCTGAGCTGGGGGTTTAGCGGCGGGGGCGGGCGAACAGTATCAGTCCGTCGTAGTCGATGGGTTCGCCGCGGTCGCGGCCGGCGGTGCGGACGGTCCAGTGTTGTTCGTTGTCTGCTGGTTCGATCATGATGGCTTGGCCGTCGCCGACGCGGTGGGCGAGCAGGGTCCAGAGGCGGTCGCGGACGCGGGCGCTGGGGTTGCCGACGAAGACTCCGGCGGCGACTTCGATCATCCAGCGGGTGAGGTGGCCGCGCAGGCCCTGGGCCGTGGCGATGAGGACGACGACGGTCACCAGGGTGGTGGCTGTTCGTCGATGTCGGGTCCGGTGACTCCGACGATGCTGTTCTCGGGTGAAAGGTCCGCGAGGTCGGCTGCCCAGTTGATGCCGCCGGGGACGGCGCCGTCGAACTCGTCCCAGAGGTGGAGTGAGTCCTGGTCGGGGATGTCCGCGTCGTCGCCGAGGAGCAGGGTCTTGATGTCACGGACGATGCGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 947-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYW010000794.1 Frankia sp. CNm7 NODE_54_length_29459_cov_15.167586, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 946 28 100.0 33 ............................ CTGTAGTCGATGAGCGGGGCGGGGAACAGGCGG 885 28 100.0 33 ............................ ACACCGCTACGGAGGCCGTGGATGCTGGTTAAG 824 28 100.0 33 ............................ GCATTCCTCGGGGAATTAGGCGAGTATCCGGCG 763 28 100.0 33 ............................ TCCAGTCGGGGTGGGTGGCGTCGAACTCGGGAC 702 28 100.0 33 ............................ CGCTCGCACCGGCCGACCTGGACCAGGTAGGCC 641 28 100.0 33 ............................ CTTTCCGGCGGCATGGAGGTCGTGTCCCGCCAG 580 28 100.0 33 ............................ GTGGTCCTGGCCCTCGCCGGCGGGGGCCAGGCG 519 28 100.0 33 ............................ CCTGCGCTACCCCAGAACAGCCGCCCAACCTGG 458 28 100.0 33 ............................ ACGATCAACCGCTGTTCGTCGACGTCTTTGTGC 397 28 100.0 33 ............................ GCCCTGGTCTGGATCGCCGGCGCGATCTGGTCC 336 28 100.0 33 ............................ GCGCGGATCGCGGGTGGCAGGATCAGCTCAGTG 275 28 100.0 33 ............................ GCGTTCTCGACGATCGCCCGACCGTCGAGAGGG 214 28 100.0 33 ............................ CCGGCCCTCCCCGGACGGGTCCGTCCTACCGCG 153 28 100.0 33 ............................ GGCCGGGACCACCAGGCCGTCGCCCGGGACGAG 92 28 100.0 33 ............................ CCGACCTCCATCGTCAGGTCCTTGAGCAGGGAG 31 28 85.7 0 ........................TCTT | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.1 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : CGGCTCAGGCCGCGCACTCCGCGCAGATCCCCCAGCCACTCGTCGAGCATCTGCGGCTGCCACATCCACGGGAACGTGTCCGCGTGCACGGCGAACGCCCGCACCGCCCCGAGCCGCTTCTCGACGGTGCTCGCCGCCAGGTTCCGGGCGAGCTGCTGCGCCTCCCAGCCCGCCAGCATCGCGGCGAACACCTGCTCGTCCGGCCGCAGCAATGCCACCCCGTCGACCAGGTGCAGCGCCGACGAACCCGCCTGTGGCCCTCCCAAACCCCGCTCCATCCCGCCCCTTCCGCCCCGCTTACATCCGATGAAGGGATATTTCACCAGATGAAAGACGGTGGTGGATGACCAGGTCAGCGGCTCCTTCGGCGCCCGCCTTGGGGCCGAGCCAGCGCGCGAAGCCCAACGGCCCCAGCGCCTCCTACGGGAGTGCGTTCAGACGCGAGTGCTTCATCCGATGAAACCCGCAGCGGTCGGAGCAAGATATGTAGAAGTAATACG # Right flank : TCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 7916-6308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYW010000794.1 Frankia sp. CNm7 NODE_54_length_29459_cov_15.167586, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7915 28 100.0 33 ............................ ACCGTCTTCGCCCAGGCCATCCGGTCGTACCAG 7854 28 100.0 32 ............................ TTGATCCCGGAGTTACCGAGCCCGAACCGCTG 7794 28 100.0 33 ............................ CAGCGCATCTCGCTGAACGAGACACCGAGGCGC 7733 28 100.0 33 ............................ TACGTCGCACCCGGCGACGCGCAGACCGTCGCG 7672 28 100.0 33 ............................ GTGCAGGACGGGCCCAACAACCCGCACGACTGG 7611 28 100.0 33 ............................ CCCGCGAGCAGCAGCTTGCGCAGCTCGTAGGAC 7550 28 100.0 33 ............................ GACTTGGTCTACCAGCAGATCGATAACCCCGAG 7489 28 100.0 33 ............................ CCAGGCGCCAGCGCCTCGATAAGCAGACCGAAG 7428 28 100.0 33 ............................ TACACGCACAGCGTGTTCATCACGCCCATCGAG 7367 28 100.0 33 ............................ CCGTTGGTGGCGAGGTTGCCGGTGTCGCCGCCG 7306 28 100.0 33 ............................ ACTACACCTGAGCCGAGTTGGTCCATGCGGGAC 7245 28 100.0 33 ............................ GATGGCGCGCATCTCCGAACCCCCTCGGCGTCG 7184 28 96.4 33 .......................G.... ACCGCCGTGCCGATGGAAACGGCCCGGGTGCCG 7123 28 100.0 30 ............................ GACCAAGCTCCAGCACACCCCGACCGGCGG 7065 28 96.4 33 .............A.............. GCCCTGGCTGGTACGAGCGGGAGACGACGCGGC 7004 28 100.0 33 ............................ GTACGGGATGGAGCCGACCCATCCGAGGGCGGG 6943 28 100.0 33 ............................ GTGACCTATCGTGGCGGAGACTGGTACGACCAT 6882 26 92.9 33 ..........--................ TGGGAGGCACGGCGGGCGCCATCGTCGCGGACA 6823 28 100.0 33 ............................ ACCCAGTGGTCATCCGGCGGCACGTCAGGGTCG 6762 28 100.0 33 ............................ CAGCGTCGCCAAGCTGCCAGGCAAGACCGAAGG 6701 28 100.0 33 ............................ GCGTTGGAACTGGCCTGGGATGGCTCCTCCGGA 6640 28 100.0 33 ............................ GTCCAGTCCAGCCACAGCGGAACCCGCCAGTAG 6579 28 100.0 33 ............................ GCGGTTATCGTCTGCCAGACGACACGCCGCCGC 6518 28 100.0 33 ............................ GCGCCTCGCGCACCACGTCAGGGACCAAGCCAG 6457 28 100.0 33 ............................ TAGTTACGGGCCCGGCCCGCGTTACGCGACCAG 6396 28 96.4 33 ..........T................. ACACGCGAGGCCCCGCCGACGGTCCGGCTGGTA 6335 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.3 33 GGAAGATCCCCGCGCGGGCGGGGACGAC # Left flank : TCACCGACGCCCTCGACCTGCTCGCCGGAACCCCCGCCCTCTACCCCTGGGTGGACGCCGAGTTCGGCTCCGAGCTGACCACCACCGCCATCCGCGCCGCCCTCCTCCTCTCCGAGCTCCACCTCGACAACGGCGACCACCAAGCCGTGCTCGCCGCGACCACCCGCGGCCTGGCGATCCAGCCCGCCCACCCCGGACTGTTCGCCCTACGCCTCCGCGCCCACCACGCCGCCGGCGACCCCACCGCCGTCACCGCCGACTACCGCGCCTACCTCCGCGCCGAACAAGCCGACGACCCCGACGCAGACACCGACCCCGACCTCGCCCACCTCCACCACACCCTCACGAGAAACACCCGCCGGCCCCGGCCGACCGCCACCAGCTCCCGCGACGCCGACGATCTTGACCCCTGGTAGAAGCTCAAACCGCTGACAGCAAATGTGACAGCGACAAGGGACAGCGTCGCCCCGCCCGGCAGGCGCGCCGGGAGCATGGCGCGT # Right flank : ACACGCGAGGCCCCGCCGACGGTCCGGCTGGTAGGAAGATCCCCGCGCGGGCGGGGACGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACCGGGGACTGGCAGGGTCGCGTATTCGACTGTTGCGAGTTCGGCCGGGGCAGCGACGAAGTTTGGCGTGGGGCGGCGATGATGCCGGGTATGGGGGGATCTTCGCGGGATCGGGTGCGTCGGACCGGCATTGTCGCGGTGCTGTTGCTGGTGGGGTCGGTGGTGGCCGCGGTGGTGCTCGCTCGGCGGTATCAGCTGGGTTCGGGGACGGCCCTGGTCGGTTTGGTGGGCGGGGTCACGGGGCTGACGGGGCTGTGGCTGGCCTGGTCGGCGTACCGGGCGGACCGGGAGGAGGCCGCAGTCGGGGAGTTGGACCTGGCTGGGGTCGCTGACCAGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGAAGATCCCCGCGCGGGCGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 23606-22563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYW010000071.1 Frankia sp. CNm7 NODE_6_length_63625_cov_28.617517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 23605 37 100.0 34 ..................................... GACGCGGCGCTCGCGCTGGAGAGCCGTACGGAGC 23534 37 100.0 35 ..................................... GGCTACGCCAGCGGAGGCGGCTCGTGACCGCGCCC 23462 37 100.0 35 ..................................... GCTCCACACGCGTGTGGTAGCGCGGACGAGGACAT 23390 37 100.0 34 ..................................... TCCGGCTCGGGCCCGGCTTCGCTGAAGGTCGCGA 23319 37 97.3 34 .........................A........... GACACGCTTGTCCAGGAAGCCGATCAGGGGATGG 23248 37 100.0 36 ..................................... CCCAGCCGTAGCCGCCGTCCAGCTCGTCGTCGTCCG 23175 37 100.0 34 ..................................... ATATAGTGCGCGGCGTTCAGCTCCCACGGCTGAA 23104 37 100.0 34 ..................................... CGCAACATCAGCATCATCGTCACGGCGAACGCCG 23033 37 100.0 35 ..................................... GACTCCCGCCAGGTGCTCGTGAGCGAACACCTTGA 22961 37 97.3 35 ................................C.... CTCGTCTGCTCCGCCCACGGCTGGGTCCGCCGCGG 22889 37 100.0 36 ..................................... GACAAATACCCGGGCCTGATCTCGTGTGTGATTCTC 22816 37 97.3 35 ...............T..................... ACGCAGTACACGCGGGTGGTTGCGCTCCACGCTGG 22744 37 100.0 37 ..................................... CACATCAACCCGGCCGGCACGGTCACCTACAGCGAAC 22670 37 97.3 34 .......A............................. GACACTCGCCCCAACGGTGACGTTCCATTTTCTG 22599 36 73.0 0 ....T..ACC..GG.....T.-.....TC........ | G [22595] ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 97.5 35 GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Left flank : CCGGGGATCCGTCCCCGGTGAGGCTCACAACATGATCTTGTGAGTGTCTCCTGAGACGGGGCGCTACGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACCGCCCCAAGCGCGCCTAGAAAGGGCCACCCCATGAGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACAAGAACGCGTCCGCCAACGTCGGCGGGCCCGACAGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACTTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATGGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACAAGAACGCGTCCGCCAACGTCGGCGGGCCCGACAGCGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACTTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATG # Right flank : CTGTTGCCGATAGGCGACGCCAGGGCATGAGTGCAAGCGGCGAGGGGATCCATCTCAGTGGGTCACAATGCGGGCTCCTATACCTACGACCCTGCGGCCATTACGAGAAGCATCGATCTTCCCTCCAGGCACTGGCCGCGAAGGGAAAGGATTAGGCGGGCAACAGAACAGGTCGGCACTGAGACCGGCCGTTGGAGCGATGTGCTTGTCTTCGCCTGGTAAGGTCGGGCCTCCTGCTCGAGGAGCATGGTGTGCTCTGATCGTCAGGTCAAGGATGCGGGAATGTCATAAAGCGTTGATGCTAGGTCTTCGCGAGTCTCCGTATTTTCGTCGATCGCTCTTGCGTCCCTGGGGTGGCCGGCGTGATTCTCCTGACCGGCGGAATTCGCTGTGGCTCTCGGAGCCGGTCAGGAGGGTTCAATGACTCAGCCCGCGCCGTACTCGATGCCCGGTAGCTCTTCGTCAGCATCAGGGTGGTTCGGCCCCTTGGCGTCGCCGGA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.80,-15.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 24112-23786 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADWYW010000071.1 Frankia sp. CNm7 NODE_6_length_63625_cov_28.617517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 24111 37 100.0 36 ..................................... ATGATCTTGTGAGTGTCTCCTGAGACGGGGCGCTAC 24038 37 100.0 35 ..................................... CGCCCCAAGCGCGCCTAGAAAGGGCCACCCCATGA 23966 37 100.0 34 ..................................... AAGAACGCGTCCGCCAACGTCGGCGGGCCCGACA 23895 37 100.0 36 ..................................... TTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATG 23822 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 100.0 36 GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Left flank : CCAAGCCCGCGTGCTCGCCCGCCACCTCCGGGGCGACCAGCCCAGCTACCTTCCCTGGAGCCCGGCCTGATGGACCTGCTGGTCACCTACGACGTCGACACCACCAGCACCACCGGCGCACGCCGCCTCCGCCGAGTCGCCAAGATCTGCGAAGGCCACGGAATCCGCGTCCAGAAGTCCGTCTTCGAGATCGTCTGCACCGAAGCACAGCGAGTTCTCCTCGAACACCAGCTCCGGGAGACCATCGACCTCCAGCTCGACAGCGTCCGCATCTATCCGCTACCCATTCGCTCCCTCGACACCGTCAGCCAGATCGGCACCGGCGTCCAAGCCCACCACCGCGGCGACCAGATCATCTGAACGCGAACCTGCTTCGGAACCCGAAGCACCCCCAGAAACACCGGTACCTTCTCAACTCTAAAACGGGACGAACCGGACGTCGATCTTCGTGTACAGGCGGTCCGGCATGTTCTAATTTAAGAAATCCCTGCTCAAGCAGG # Right flank : AAGAACGCGTCCGCCAACGTCGGCGGGCCCGACAGCGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACTTGAAGTCGATGTAGAGGAACGTCAGCGCCGCAATGGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACGACGCGGCGCTCGCGCTGGAGAGCCGTACGGAGCGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACGGCTACGCCAGCGGAGGCGGCTCGTGACCGCGCCCGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACGCTCCACACGCGTGTGGTAGCGCGGACGAGGACATGCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAACTCCGGCTCGGGCCCGGCTTCGCTGAAGGTCGCGAGCGGCACCGGGGATCCGTCCCCGGTAAGGCTCAC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCACCGGGGATCCGTCCCCGGTGAGGCTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.80,-15.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //