Array 1 194504-195569 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDMU01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 205 NODE_4_length_461619_cov_25.5313, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 194504 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 194565 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 194626 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 194687 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 194748 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 194809 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 194870 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 194931 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 194992 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 195054 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 195115 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 195176 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 195237 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 195298 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 195359 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 195420 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 195481 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 195542 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 211705-213198 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDMU01000004.1 Salmonella enterica subsp. enterica serovar Montevideo strain 205 NODE_4_length_461619_cov_25.5313, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 211705 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 211766 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 211827 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 211888 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 211949 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 212010 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 212071 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 212132 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 212193 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 212254 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 212315 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 212376 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 212437 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 212498 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 212559 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 212620 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 212681 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 212742 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 212803 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 212864 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 212925 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 212986 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 213047 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 213108 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 213169 29 93.1 0 A...........T................ | A [213195] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //