Array 1 33199-32046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPM010000037.1 Leptolyngbya sp. FACHB-17 contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 33198 37 100.0 37 ..................................... ATCTGACTACCACATTGCACAACGCAGCAATGCTATC 33124 37 100.0 42 ..................................... TGCCGATTCCCCTTGTTTGCTCGTGATCGACGAAATCAGAGA 33045 37 100.0 36 ..................................... AGGGATTCCAGTAGAGTGTAAAGCTGAATTGCTTCA 32972 37 100.0 38 ..................................... GCCTAGCGATCGTTGATGATCGGCTTCCTGCTTGGCAT 32897 37 100.0 36 ..................................... TTTGCAATGTCTTTTTCATTGAGATAATATCCTAGT 32824 37 100.0 37 ..................................... TTCGCTTATTCAGATTTACCCGTAGACACTCACGGTA 32750 37 100.0 37 ..................................... ATTCTAAAAATGGTGACGACTTGCCGAATATGCAATC 32676 37 100.0 40 ..................................... TTCTAAATCGATCGATGTCGGTTCTTTTATGTAAGGCGTG 32599 37 100.0 40 ..................................... TTTAGTACCAATGCGTAGCAACCGTTATCGTAAGTCGGAA 32522 37 100.0 37 ..................................... AACTAAAAACAGCAACACTGAGGGATCAACCAATGAC 32448 37 100.0 39 ..................................... ACTGTATCAGGCTTATTCGTGCGGATCTTGCTCTTGCCA 32372 37 100.0 35 ..................................... TTCTAAATAAGCAATCGGAAAATTTGCCCCCCCCA 32300 37 100.0 37 ..................................... AATTGTCTTTCGACTCAGTTTCACCGGATCGCCCAAG 32226 37 100.0 34 ..................................... AGATTAGTCGCGATGCTTCAGCGAGAAAGCGGCT 32155 37 94.6 36 ...................A....A............ TCTCGGTAATGCTTGTCCATGCCGTAGATCCTGAGC 32082 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 16 37 99.7 37 GTTGCGATCAGCCTCCCACGAATGGGTGGGCTGAAAG # Left flank : GCCGCTGAACTGTGAAAAATGAGGGTCAGTTTGGTCGTTGTGAGACGACTGTACTTTCCGACCCTGGTAGCTGTCCGCTCACTAACTGCCATCCTGGCGCAGATTTCGATTTGAGATTTGTGTGGGGATGGGAAAGCTGTAGTTGTGGAGTTCGTTCTTCAACTGTAGCGCAGGTGCGCACCCAGCAGAAGTGGGTCAAGCCTTCACAATGTGGGGGTACAGGGGCATTATTGCATCAAGTGATTGATAATGTGACTGAAGTGGCGGCTACTGAATCGCCTCCGAGCAAGGAGGAGTCCTCCAATTCTTTTTGGCAAACCGCAGCAAGAGCAAAATTGCTGGGAGGTTCGCCAAAACTCTAGGGTCCGCTACTGGTGATGCTTTCATTCAACTGCGGTGTGCCGAAGTAAGTTTTCCAGAAAGTTGAAAGAGTACTTTTTAGATGGGTTTGCCAAAAGGCAGCTTGGAGAGCTTGCAGGAAAAGGATTCTAGCGCTGGGA # Right flank : CCCAGAGCGAAAAGTACAGGCAAAACTATGTACTGAGTGGACTGTTCAAATTTGAGATGCAATTAGCATCAGCAAGATTTAATAAGTTGAATTTTATAGTCTACTTATTTGCTGGCGGCTTATAAACCCGCACTAAACTAGGGCACTAATATTTTCTATTGGAGGACTGAAAGGAGCACTCGATTCGTAATTCGTCAGCATTCGTCCTTAATTCTAAGCGACATTAATTTGCGAATTGCGTAATTAAAACGAAGAACGACGCTAATTTGCGAAAAGCAAGGATTGGCTAATTTGCGACACTAATTTGCGAAATTATGCTCAACTAATCAAGAATCGTCAAAAACGACATTAATTTGCGAATTGCGACGCTTAATTTGCGAATGTACATAAGCCGATGGCGGGATTTGAACCCGCGACCGCTCGATTACGAATCGAGTGCTCTACCCCTGAGCCACATCGGCATAAAACCTTAGTAAGTATAACAGGTTTTCGATCGCACT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCAGCCTCCCACGAATGGGTGGGCTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 5708-10991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPM010000083.1 Leptolyngbya sp. FACHB-17 contig83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 5708 37 100.0 37 ..................................... ACAGTGGCAGTACGTTAGCGACCCTATAAATAGTGTC 5782 37 100.0 36 ..................................... GTAGAATTCTAGCCCCGGATGTTGTAACTGGTTAGT 5855 37 100.0 35 ..................................... GTTCGACTATTACTCAATGTGATCAAGATTCTGAT 5927 37 100.0 36 ..................................... CCTAGCAGCGATCGAGGATACGAAAGATCACGGCGG 6000 37 100.0 37 ..................................... GAAAATAATAAGAGCGGTATACTTTGCACTTATAGAT 6074 37 100.0 40 ..................................... CCTGGCACCGGGTTAACTGCATAGTCCTAGCCCCTGACAG 6151 37 100.0 44 ..................................... GTTTAGCAACCTTGAAGAGAAATCACCCACCAATGAATAAACCA 6232 37 100.0 38 ..................................... GTTACATCAAAAGGCTCGAAGTGGTCGATAGCTTGGAA 6307 37 100.0 36 ..................................... GTGCCCCCGGTGATAGCCTTGATCCGGTTAACGATC 6380 37 100.0 35 ..................................... ATCTGGATGCGATCGCTCTAGATCTGTTACTAAGA 6452 37 100.0 37 ..................................... ATCTACACGGGCGAGGGGGTAGTTTCGCTGAAGTACC 6526 37 100.0 37 ..................................... AGCAAGGTCAGACGGTTGGATTCCGTCGAATCCGAAT 6600 37 100.0 37 ..................................... CTCGGAATCAAAAGCAGAACCACTGATCGAAAGAGCG 6674 37 100.0 36 ..................................... GACGTTGAAACGTCTGAAGTAGTACATGGTCAGGAG 6747 37 100.0 36 ..................................... AGGGTGAGAGTGTGAATTTAAGTGTGAGTAGCTAGT 6820 37 100.0 35 ..................................... CCGGGACTGAGATATTCATGCTTGATAGTGCGGGT 6892 37 100.0 40 ..................................... CAACTTTCGACCGTTCGGGAAGATATGACAACGCCCTAGT 6969 37 100.0 40 ..................................... CATACTTGACGGGTAGATCGTGGATTCGCTCTGCATCAAT 7046 37 100.0 38 ..................................... CCCCAACTATTTCTAAAATTCTGAATCAGTCGATAGAA 7121 37 100.0 36 ..................................... TTGACGATCGCAGCGGCTTGCAATGCAGATAGGGTC 7194 37 100.0 35 ..................................... ATGTGGGAGCCTTGGTTGCTCTGTCTCTGTCCGAT 7266 37 100.0 39 ..................................... CCTCATCGTCTGCGGTGATTGTGCCGCGAATGCTGCCTT 7342 37 100.0 37 ..................................... ACTGATTCACAGCAGTCAATCTACGGAATCCATCAGT 7416 37 100.0 43 ..................................... TTCTGAGATCTGCGATGAGCGCTATCCCTGAGATTGGAGATTT 7496 37 100.0 36 ..................................... CGTTTGCTTGCTTAATTACTAATGTACGCTACTTCT 7569 37 100.0 36 ..................................... CTGGCGCAATGTCTAAAGCCCACTCATTTATTTATA 7642 37 100.0 34 ..................................... CCTGAGATCGTGTGCTCGTGGTTGCCGTCTTGAT 7713 37 100.0 37 ..................................... TTCAGAAACTGTTTGAAGAGGAGAAAAAACCTTTAAC 7787 37 100.0 35 ..................................... AAACAGCGATCGCATCCATTGATCGAGTCACCATC 7859 37 100.0 36 ..................................... TTTTGGTAATTTTCTTAATGCAGATTTATTGTATAT 7932 37 100.0 40 ..................................... CTTTGACCATCGAGGAAGCTATAAAGGCGCTGTACAAAAT 8009 37 100.0 37 ..................................... TGGAAACTTCCGCACGTGGTGGAACCATAATTCCATT 8083 37 100.0 37 ..................................... CTAGGACGCAAGTGTGAGAGGTCTACAACGATGGATT 8157 37 100.0 34 ..................................... TTAAAGAAAATGCTTTGAAGCAACTTGTCAAAAA 8228 37 100.0 36 ..................................... GTTCACTATCGTGCATTCCAAGAGTGTGCAAAAGTT 8301 37 100.0 41 ..................................... GTCTTTGATTTTTGTACCCAATGGGACAGCGACGCTACCGC 8379 37 100.0 37 ..................................... CTCTCCCTCTAGCACTATTCATGCCGTTTACTCCAAT 8453 37 100.0 36 ..................................... CTAACCTACTCGATCCAATTGATTACGAGTGGAGAG 8526 37 100.0 38 ..................................... AAGAACACGCACATTAGGAATAGCGGGGAGAACCTCAG 8601 37 100.0 37 ..................................... CCCCTACTGATCCAAATATTAATCCGTTACGTGCTAT 8675 37 100.0 39 ..................................... CATCTGATTGGACTAGCGATCGGTTGAATTTAGGTAAAA 8751 37 100.0 37 ..................................... GCAGCACCCGCTTAAATCTAAAGTGACTTTATTAAAA 8825 37 100.0 35 ..................................... ATTTGCCTGATCCTATTTCGATTGCAAGGCAAGGT 8897 37 100.0 38 ..................................... AAACCGACAAACGCGATCATTGCGATCAACGCCACAGA 8972 37 100.0 38 ..................................... GCAGGAGGCGCAAAAACAAACTGAGGGGGAGTAAAGTT 9047 37 100.0 38 ..................................... CCCAGCGGCATTCACAGCAAACTAGAATTTCCTCGCAT 9122 37 100.0 38 ..................................... CAGAACGTTCACTAGGTTGTTCATAACTAAAATCTCAT 9197 37 100.0 36 ..................................... CTGTCGGCGGAACCGTTGGAAATGCACTAGAAGGAT 9270 37 100.0 38 ..................................... CAACCCGGCGATGGTCAAGCGCCAGTGCAAGAGAAAGT 9345 37 100.0 37 ..................................... CCGTAGCCCGTTTTCTTCACGACCGCTTGCCACTGTC 9419 37 100.0 34 ..................................... CGCGCCTTAAAGTGACTAGAGCGATCCTTTGGGT 9490 37 100.0 36 ..................................... CATTCAAACAAGCAAAAAGTATGTGCCACAGCGCAA 9563 37 100.0 35 ..................................... CATTGGTTGATCCCTCAGTGTTGCTGTTTTTAGTT 9635 37 100.0 37 ..................................... AATCGCTCCGGTGGACAGGGTAACTGTGGGCATAGAA 9709 37 100.0 36 ..................................... ACGGAACCCTGACCCCGGATCACCTCAACATCTACC 9782 37 97.3 35 ..................A.................. CAAGCCCGCGAAAGCCATCCACGCCGATATCAAAT 9854 37 100.0 36 ..................................... TCCGATATTTTCCTTTGCAGCGGCTTGAACTTGCTG 9927 37 100.0 37 ..................................... AATTTGGCGGAGCTAACCCAAACATATACAATCTGGG 10001 37 100.0 35 ..................................... ATCGGCCTTCATTGCACTTACCTCATAAATTGGAT 10073 37 100.0 36 ..................................... TTCCCATTGCAACAGTCATACTTTTGCAATACTTTC 10146 37 100.0 41 ..................................... CCCGGGAATTAGAGCAAGCAAAGCAGGATTATCTCTCGCAT 10224 37 100.0 36 ..................................... TACCGATCTTGAACGTTACCACTACGATTATTCTCT 10297 37 100.0 36 ..................................... TCAAGCTGGCTAACCCTGACGGCACTACGACCTGTC 10370 37 100.0 36 ..................................... TATCTTTGATTTAGGGCTTAAGCAGTTTTATAGAGT 10443 37 100.0 37 ..................................... CTGCTTTTGGTCGTGGGATTATCCGCGATATTTTCGT 10517 37 100.0 36 ..................................... CAATTTTAGAGGTGTCAGAGAAATGACAAACAAAAT 10590 37 100.0 37 ..................................... CATTCCAGTTTCCCCCCGCTCAATCTCCTTATCAGTT 10664 37 100.0 37 ..................................... CTCCGTATGGAAGGGAGAATAGGAAGTCAGTATTCAT 10738 37 100.0 35 ..................................... GATAGTCCGAACGATCGTCGAATGTCTCAGTACAT 10810 37 100.0 35 ..................................... TCCCCTTCAGAGTTTTTCTTGGCAAGACCTACGAT 10882 37 100.0 36 ..................................... TTGATCTGTTTCGACAGTCTCGCGCCAAACTTTAAT 10955 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 72 37 100.0 37 GTTTCAGTCCCGTTGCCGGGATTCAGAGCTTTGCGAC # Left flank : TCGAGCAAGGCTTACAAGTTGCTGCGGCGCGGCGGTTGATCTCGCAGCGGGATGTACTGTGGAATCGCTTAGAGTCTCTAATTACGCTGGTTAGAAACGGAGTCCAGGTTGCTGATGCTGCAAGACAAGTGGGTGTTTCTCAACAGCTAATCGCACGGCTCGTTGAAATGGGATTGAAAACACAGTCGGTATAGTCATTGAAATCGAACCATGATTAGCACGGGTGGAATCCGACGAACTACGATTCTAAAATCACTCATCATTGGGCTTGCAATCGTCTGCATTACGCTACTCTTTCCAGCAAGCGTTGCCGCTAGTCCAGATGTTGAGGGAACACTACCGATTGCTTCGGTTGAGTGGGATGGGCAATATGCTCGAATTCCTGATTGGTCAGAGATTACGCTTCATTCGCTTCCACCCATTCTCAAAGATGGTGAGTTCACTGCGCCTTCAGAGCTTTGCGACGTAACCGTTAACGTTACCCCGGATAACGGCAGTAA # Right flank : CCCCGCCCTCTGTAAGCCAGATTTCGCAACCATTTCAGAAGCGATTTTGGCAAGGGTCTTGAGCGAAGTCAAATTAGCCACCCAAAATTGTAGATTCTGAAGCAGCGTGAATGACTTTAAAGTTCCAAAACTATTCATTTTTCAAGGTTCTGGCGATTTTGGCGAACCCCCCAGGGTTTTAGCCCCCGCTTCGGTTTGCCAAAAAATGTCTGCCTCATCATCATACAGCAGTCCTGAAGCTGAGCAGCAAAATGAATCAGAACACAAGCCCCATTCCACAGCCTCATCTCACAATCAAGCAGTCTTACAGGATAATCGCCGTATTCTGACGAGGTTTCTCTGACCCATAGGTCATCGTCCGCTTCACCGCTCCCGCATCTAGAACATAAATCCGGACGGAATCCTCATCTGGCTTAATCAACTTTTCAACTTGAGTTTGCAGCTTCGCAAACTGAACTGCCGTTAGAAAACATTCAAAAACGCTGTACTGCGTCCACTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTTGCCGGGATTCAGAGCTTTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 33634-33819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJPM010000079.1 Leptolyngbya sp. FACHB-17 contig79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 33634 36 100.0 36 .................................... GACTTGATAATACATGGTTTTGAAAAATGACGCATC 33706 36 100.0 42 .................................... AAAAACCTCTTCTGAAGCAGTCAAATGTGTTGCGACGCCTTG 33784 36 94.4 0 ...........G.......................G | ========== ====== ====== ====== ==================================== ========================================== ================== 3 36 98.1 40 GTTTCATCCAGATTTGCGGCAAGGGGATGATTGAAA # Left flank : ATTACGAAACAACCTCTTTCAGGCACTCCTCAAGAGAAAGCAAGAGATCTAGCGATCGCAGCATACCAATCTCGAAAATAAAAATTACTTGCAATTAGTTCAAGTGTATTTTATAAATAGAGTGCGCCGTGGTTCATGCTAGCAATAGTCTCTGTGCCATCGACAATTAGGAGCTAGTTTGACTATCGGAAGATGGTCTTGCTTTCTGGCTCAGGTTAACTGTCTACCTCGAAGTTGGGTGCGCTCCCAGCAAAAGGGTGCGGGTCTACCGCAATGCTGGTTAGCCCATCTCACCTCCGAGCAAGGAGGAATCCACCCCTAACTTTTAACTTGTTGGCGAACCGAAGCGGGGTTAAAACCCCTGAGAAGTTTGACAATTCATGCAAATCAATCCCTTCAGCAGCTTTCCACAGCCTTAGGCTGCAGAAAGTATCCGCTTTAAAGGGGTTTGCCAAAACTATGTTTGAAGAGCATACTATGGCTGCACTTTGAATGGCATC # Right flank : GAGTAACTTAATCTTTTGGCGACTTTATAGACACAATTGATAGTAGGTGGATTGAAAGGACTGCCTGACCCTGGGATTTAATTTAGAAACAGTTGCCTCTCGTCGTAATGAGCAGAGCTGCGTTCGTCTGAACTTGGGTAGAGGCGGTACTGTAACTGTAAAATGCTGAAGTAGATAAGAATTTGAATCAACATTCAATCGCTTGAAATTCTAATGACAAGAATTTGTTAACAAAGGATTTTTTATTTTCGACGACAAGAGTCTGTTACAAGGACATCAATTTGTTAACGATGACAAATAAAGTGTTATTCGACAATAGGGCTTGTCGAAGAAATGGAAAAAATTGCCTGACTCTTAAAAGCCCCCAGAGTCAGGCAGTCTACCTGTAAGGACGCTTTTAGCCGGATAGACTAAACAAGCTTAGTTGCCCCCTAGTTGCTTAGCGTCTCCGATCGCGTTCCTCAGATTTAAGCCCATTGTCGATCATCCGAAGAGGGAAT # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCCAGATTTGCGGCAAGGGGATGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //