Array 1 356-56 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNKF01000019.1 Bifidobacterium adolescentis strain AD2-8 Contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 355 36 100.0 30 .................................... TGACAGCGCCGTTAATCCAACGTACGCTTT 289 36 100.0 30 .................................... CACACGTTGCAACGCAACCGTCCGCATGTA 223 36 100.0 30 .................................... CGAATCGTTCAACATCTGGAATACGCGGAA 157 36 100.0 30 .................................... CGGTCGAAAGCGCCAAAACGTCCATCCTCG 91 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTCAGAAGCCTGTCAGATCAATGACCTAGACCAC # Left flank : ATTGCGCTGATATTGTTGACTACAATGCACTATTCCAAAAAGCGGCAATTAAGAAAATAATAGATGAATTTGATGTTGATAAATTAACTAGAGTGCTTGAGTTGCAGGCAGAGTTAAAAACGCTTATTCAAGATGAAATATGGGATGATGATTTGCCTCTGGAAATTTCTTCTTCGCTGGATTTGAAAACTGCGATTTCAATGGCAAAATTACGTGTTGATGTGAGCTCTGTGGGTTCCCTATTTGATAAAATTCAGATGGTGGTTGATACTGCCGGTGCTCTTGCTGAGAACAGGATGCTTGTGACGCTTCATACAACTCAATATTGTAATAACGACCAATTGATTTATTTACATAGAGACCTATTAAAAAATGGTATGCAGCTTCTTGACCTGGAATGCTGCAACAAAAGGGTTACCCTGACAGAAGGAAGAAGCCATTATGTTGATGGAGATTATGTTCAGTTCTCATGAACTGTTCAGGAAGCTCCAAGGCTATCG # Right flank : CGTTCCTGGTGTGACGGTGGGTTTTTCCACGGTTTCAGAAGCCTGTCAGATCAATG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGCCTGTCAGATCAATGACCTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 380821-381252 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNKF01000004.1 Bifidobacterium adolescentis strain AD2-8 Contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 380821 36 100.0 30 .................................... AAGACCCTGCTCGTGGAGGCGCAGACCGGC 380887 36 100.0 30 .................................... TCCAACCTCTCACTTTCGTGACCGAGGTCA 380953 36 100.0 30 .................................... ATGGATTCGGAGAGCGTCACGTCCACCGTG 381019 36 100.0 30 .................................... GAGGAGATGGCAGATGGCATCGAAGACGAA 381085 36 100.0 30 .................................... AGGGTAAACGGCTTACCATCGGCTTTCCCT 381151 36 100.0 30 .................................... TACCGTCCCTCATGGTTGACCATAAATCCG 381217 36 97.2 0 .A.................................. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.6 30 GTGGTCTAGGTCATTGATCTGACAGGCTTCTGAAAC # Left flank : CGCATAGGCGTCAAGCAAGACGTCTTTGGGGGACGGCGATGTTATTTTCGAGGATGTCTGCTATTAGCCAGCTCAGCGAGTAGTATGGTTCTCCTGCATTAAAGCCATCATCGAGGGATTGGACTTGGCCATCGGGAAGAGAATCGCAATAGGGTCTCAACTGTCGGTAGGCTGCCGCCACTTGCCGATCCAGGGGCCATAACCTTTCCCTTTCCTGTGTGGTGGTCAGATGGCCGGTGTAAATGCGAAAACGTTTCTCTTTGCCGTGTCTTTTCTGCAACCATACGCGGATTAGTTCTTCTTCCACGATTCTATAGCGAGTTTGCCTGTTCTCATCAGCCCGTTTGATGTAATCCGGATCGGCCACCCCTAAATAAAACGCCCATTTCGCTTTCATTTCATCCCAATCGTCTAGGAAATGTATATTCCCTTCGACGCGAATATCAATCCCATATCTTTCGAAAATATGATTCCGAGCCTTGAAATAGGCATAGCCGCGA # Right flank : ATTATCGGCGTGGTGTCCACGCACAATATCGAGGTCTAGGTCATTGATCTGACAGGCTTCTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCTAGGTCATTGATCTGACAGGCTTCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 13885-14589 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNKF01000017.1 Bifidobacterium adolescentis strain AD2-8 Contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 13885 28 100.0 34 ............................ TTACAGTGAAGCCAAGCGCCCGACCGTGAGCTGG 13947 28 100.0 33 ............................ CCAGCGTCGTGTCCGCATCATCAGCATGACTGG 14008 28 100.0 33 ............................ CTTCGAACTGTCTGGCTCCCATCGGCCAGGCGG 14069 28 96.4 34 ..............C............. CCCCGGCCGGGCGAGGAAGGAGAAAGAACCTCGG 14131 28 100.0 33 ............................ CGACAAGCAGCGGGTCGTTCTCGCCGCTTCCCG 14192 28 100.0 33 ............................ CTATGCGTCGCAAATAAAGACGCACCTTCCATA 14253 28 100.0 33 ............................ TATACCAGTACCGCACGGGACTTTTCAGAAAGC 14314 28 96.4 33 ..............C............. CGGTGGGGGTAACGACCTTGCGGAGCTCGTCGA 14375 28 100.0 33 ............................ CTACGCCCATCCGTTCGACGCCTACGAAGGCGA 14436 28 100.0 33 ............................ CCGTAAGACCGAGGATGTGGTGGCATTCGGCGG 14497 28 92.9 36 ..T...........C............. CCGACGACGACCCGCCAAGAAGAATCGGCGATCTCA 14561 28 82.1 0 ..............G..T....GCT... | G [14575] ========== ====== ====== ====== ============================ ==================================== ================== 12 28 97.3 34 CTCTTCCCCGCGCATGCGGGGGTGATTC # Left flank : GCTCATCCGCCTGGCCCGCGCCTGCACGCGGAATGTCCGCGTCCAGACCGAGATCTTGCGAGCGTCGGCGTGCGACGACTTCGTGCGCGGGGCACTTGGGACGGTCTCCGAGGATCCCGGCATAAGGCAGTTGGCATGGAGTACGATGCGCGACCCGAACGGGCTAGGGCTGGCCGATTTGAGCGATCGGCCCTCGTTGATCGGCGTCTGTGCGAATCCCCGTATGACCGAGGCCGTGGCGGGCGAAATCGTGCGCAAGGCGGGTGCGGCCGCCGCCACTCGGCTCAGGGGTAATGAGTCCCTACCTGAGGAATTCCGGCGTGGTCTGGTGGCCGCGGCCGGCTGGGACGCATGATGTAGGCTGCGATGCTTGATAATTGAAAAGCCCCCGGCCCCGCGTTCTGGAATCACGCGGCGCTTGGGGGCGGCTCTTGAAAAAGAGCGAAAAATTTGCACTTAGGGGGTATGGCCATATCCTCGGAGGCCGCATTTTCAATACT # Right flank : CCATACCCGCGCGACGCATAGTTCCTAGTATGACTACCATCGCTAAACCATTCATTACCATAGGCCGTTTTATCCGCCAGACCATCGACGAGATTCGTAAGGTCGTGACGCCCTCCGTCCGCGAATGGGCCGGTTGGATCGTCGGCGTCTTTGTCTTCGTGCTCCTGCTCATGGCACTCGTGACCGGCATGGATTTCGGCCTGGGCAAGTTGACCTTGTTCATCTTCGGCTAGAAAGGAGCCAATATGCTCAAAACCATCATGACCGTCGCCGTCGCGGTCCTCTCCCTACTGCTCGCCTGCCTTATCCTCATGCACAAGGGCAAGGGCGGTGGCTTCTCCAATTTCGCCGAGGGCCTGACCGGCTCGGCCGGCAGCTCCGGCGTGGCCGAGAAGAACCTGAATCGGTGGACGGTCCTCGTCACCCTGTTGTGGGTGGTGCTCATCGTCGCCGTTGATCTGCTCTAGAAGAGGGAATCGTCGAATGTCAAAATGGAGCAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCATGCGGGGGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //