Array 1 36-4147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIM01000107.1 Chloroflexus sp. MS-G contig00107, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 36 37 100.0 37 ..................................... CCAACGGTCTGGATGTTTGCGCAACGACCAACCGACG 110 37 100.0 35 ..................................... GGTGAGATTGTGCGCAGCGGCGAGGCGGCGGTGAT 182 37 100.0 35 ..................................... GTCATTTGCGTTCGAGTTTCTAACAATTCTGTTCG 254 37 100.0 38 ..................................... CCGTTGGCCGCACCGCGCCGCGCTCAAAATACGCGGTT 329 37 100.0 39 ..................................... GAAAAATGAGTGTTGTGACGGTTGGTAAATAGAGAAGGG 405 37 100.0 37 ..................................... CCTGCGGTTGACGTTAATCCGATTTCAAAGAATTGGC 479 37 100.0 37 ..................................... CCATCAATTCAAAACCCTCTCACCAACACTGGTGAGA 553 37 100.0 39 ..................................... CTCATTGTTGTGCCGCACCACAAACAACCCGCGCTGGCT 629 37 100.0 40 ..................................... AGATTTCGGCTTGCGAGCGGCGGATAACGTTCGCGCTGCT 706 37 100.0 36 ..................................... AGTGCTGGGTGATGACGTACCAACCCGCACCGCAAG 779 37 100.0 37 ..................................... TGACACCAACCCGCGCCAGCGCCTCGCGCCGCCAGCG 853 37 100.0 39 ..................................... GCGGAAGCGCGGGCAAGCGCGTTGGGGTGGTTGGTGGAT 929 37 100.0 36 ..................................... ACACCGCCAGCGCGCCAGTTCCGCGCTGGCGGCGCG 1002 37 100.0 35 ..................................... CTGCTTCCGCGACGGGAATATGAAGCTTCCGCGCC 1074 37 100.0 36 ..................................... CTGTTTAACCAGCGCTCGCGCCACTCCCGCAGCAGC 1147 37 100.0 36 ..................................... TTTCACTTCACAAAACAAAAAACCCGCCGGAACGTC 1220 37 100.0 36 ..................................... CAAGACCGCGATTAGTGTTCAAGACTTGCCGTATTC 1293 37 100.0 35 ..................................... GAGATCAAGCGCGCTGAGTAAGCCGTCCGCGATGT 1365 37 100.0 36 ..................................... GCGGGCGTTTCAGCAGTTGCGACAGATGATGCTGGA 1438 37 100.0 39 ..................................... TACGATACAATTGAGCAAGCCGCTGCCGACGGCTGGCGG 1514 37 100.0 37 ..................................... CCAATCGCTTTCCGCACCAGCCGCGCCACCACCGGCG 1588 37 100.0 37 ..................................... GCCACTCCATAGAGCGACGCTAACACTTTATAAAGAT 1662 37 100.0 36 ..................................... TCGCTTGTTGTGTCTCTAGTATACCGCGTCGCGGTG 1735 37 100.0 39 ..................................... TCAACGCGGCCTGAATAGGCCTCGGTCAACAACGCTTCG 1811 37 100.0 36 ..................................... ATGACAACGATGCGCGGATGCGGGCCGGTTTCGGTG 1884 37 100.0 36 ..................................... GTGCTTCCAACTGCTCAAATAGTCTGAAGCGCTCTT 1957 37 100.0 36 ..................................... CGTTGTGTGTATTCCCCAACCTCGACGAAGCTGAAG 2030 37 100.0 36 ..................................... TTGAGACGTTGAATATAAAACGTCTCGTGGTCAAAG 2103 37 100.0 37 ..................................... AACAACCAGTCAAACGTTGCCAGAAACGCCGCCGCGC 2177 37 100.0 40 ..................................... ACCTCGTCAGCCCGTCCCAGCGCTTGCTGACGCGCTGAAG 2254 37 100.0 37 ..................................... TGTGCCGGAAGCGCTCGCGGAAGAGGAAGCCCAGCGC 2328 37 100.0 35 ..................................... TGCTCCAGCGCCAGCGCGAGGGTGTCAATCAGCAG 2400 37 100.0 35 ..................................... GAAGGAGGGTATATGCCGCACACAGGCGTTGTTGA 2472 37 100.0 36 ..................................... GACAACCCAGCCGTAACAGGACGAAATGGTAACGTT 2545 37 100.0 38 ..................................... AAGACTGCGCTGCGTCTGACCAATTCGCCTGCGACGCG 2620 37 100.0 39 ..................................... CTACTGGCGGGATGTAGACGATCCCGTCTGGCAGAACAG 2696 37 100.0 37 ..................................... CACTGATTACAACGAGGCTGCTGCGCTGGTCGAGGTT 2770 37 100.0 35 ..................................... GCGTTTTTCGCGGTTATTAGCAATTACGGTCGCGT 2842 37 100.0 36 ..................................... TCATCGTGCACACCGGCAACGGTCTTATGCCGGTTT 2915 37 100.0 35 ..................................... ACAACTCGCTCGACGAAGCGCGAGCGGGTCAGTAC 2987 37 100.0 38 ..................................... GCGGCCAGACGAGCCGCGCTCGGGCTTCCGGCGCTGCG 3062 37 100.0 38 ..................................... ACCAGGCGCGCTGTGGTGCTCGAAGCTGCCAACGCGCT 3137 37 100.0 36 ..................................... ACTGGTGGCGGCAGTGAAGTTTGTTTGGTCTAATTT 3210 37 100.0 39 ..................................... TGGACGCGGAGTAACGAACTTCCCGACACCGACGCGGAT 3286 37 100.0 35 ..................................... ACGTAAGAATTGACGCCTTTACCGGCTCATCCGCT 3358 37 100.0 37 ..................................... CTGTTGCGCAAATTAGAGTCGGATTTTCGCGTTTCGC 3432 37 100.0 39 ..................................... CCACTGCGACCATAGATACTGCACCAGGCTCACCGGGAT 3508 37 100.0 39 ..................................... CCACGTGGGGAGGGAGATAGTGCCACGCTTGTTCCAACG 3584 37 100.0 38 ..................................... CCCGCTTTCCACGCACCGGTGTGGAACAGCCTGCTGGA 3659 37 100.0 41 ..................................... GCTAGCTGTGGGCAACGCTGTGCCACTTTGCACAGTATGAG 3737 37 100.0 37 ..................................... GCAGAAGCTGCGCACCCACCAACGGGCGCACGGTCGA 3811 37 100.0 37 ..................................... CCGTCGTGGGAGACGATCCGCTCCGGTGCTCCTATCA 3885 37 100.0 39 ..................................... AAAGCCGGTGCACGGCGCTGACCGTGCTCACGCGGTGGC 3961 37 100.0 35 ..................................... CTCGCACCGCTGCCAGCGCATCTCATCCCGTGGGT 4033 37 100.0 41 ..................................... TCGCATGCACGAGCAGGCGATCGCGCTCACGCTCCCCCGAG 4111 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 56 37 100.0 37 GTTTCAGTGCTCTACCGTGAGCCGAAATTGTTGAAAG # Left flank : TTTTGCAGCGTACAATCAAACGATACGCTGCAACGG # Right flank : GGGCGCCTCTCTTTTTCGTCCCCCTCGCTGTGTTGACCCTCGTACCTCTTCCCTGACGCCTCATAAGCCTTTCTGTACATTCATTATATCGTTCTTTGGACACTGCGCAAGTGGGGGAATTGCTCCACTGTCGCAACTCGTTGTTTGCGTGAAATTGCTACCGAGTTGCGAGATGCTTTTTGATCCTTTTCTGATGCTTTAAATCTGCGATCAGGCGATCTTTGTATTCGGCATCAAAGGTCTTTATACGAGACCTTTGATGCCTGAGTTGCGAGTCGACCGTTTATACGGGCAGTTTTAGAGCCGACTCTATACAACGTCGTTGCAGAAGCGGCGGAATTCACAGTTGACGCACATTGCGCGACTGGTCGGCGGCGCCGGTAGGGCCTCGGTTTGAATGGCTTTCTGCACCGCCGCGATGGTTTCAAGGACGTTTTGACGTAGTTGCGGGCTGATCGGGACTTTTTCGGCTTTGCGTAATGGTATGTGGTAGATCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTGCTCTACCGTGAGCCGAAATTGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.40,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 820-1331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIM01000169.1 Chloroflexus sp. MS-G contig00169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 820 37 91.9 45 ..AG................................A ACGTAATGCCGGTTTTGATTTTGTGATGACTCCGGCAAGACGGGC 902 37 100.0 42 ..................................... CGGTAATTTTGAGGATGTTGTGCTCGGGAACGAACGTTTTGA 981 37 100.0 45 ..................................... ATCCGCGAGCGTCGCGGGTCTTTTTAGTGCAGTTTGGAACGCGGA 1063 37 100.0 41 ..................................... CCTTTCTTCAAACGGAGCAGGCGGGGGAAGAGGGTCGGTAC 1141 37 100.0 40 ..................................... CTACTGTCGCGGGCGGCGGAACGGCGTGACTACAAACAAC 1218 37 100.0 40 ..................................... CTACTGTCGCGGGCGGCGGAACGGCGTGACTACAAACAAC 1295 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 7 37 98.8 42 CTTCAAAAAACCAAAATCCCCGCGAGGGGATTGAAAC # Left flank : AGCCGGGCCGGGTCGTTCAGCTGCAGCGCCACCAGCGCATCAGAGCGGTCGCGCACGTTGGTCACCCGGCGCTCGCTGATCGGCAGGTGGCGGGCCTGGAGGCGCTGGTGGATCGCAGGGACGCTGGCGTGCTCCTGGGAGCGGAGACGGCCGACTTCGGCGATGACATCACAGCCAAACTCGTGCTGCGGCAGGCTCTAGCGCCCCTCGGCCTCGGGACGGTAGGGTGTGTGAGCGCGTGGGCAGGTCGACGTGCGGCACTGCTGCATGCGCAGGCGCAACTCGACCACCCCCTCCAGCGTGACCACCCGTCGGCGATTGGTATCCTGTCGCCAGGTCGGTCCACCGCAGAGCGGACAGGTTGGCTGCAGGCACTGCAGCACCTCGCTGCGCACAGCCGTCGGGCGATTCAAGCGTTTCATGCGCGACTCCTTCACGAAACAGCGATGTGTCGCTATCCTACGTCTTCAGTGGGGTCACGTCAAGCTGACTTTGCCGGT # Right flank : CATATGCCGCACACGTTGTTGTGGTATAATCCCGCACACAGAACGCATGTGTGTGACGCTGTGGAGGAAGCTATGCGATTCATCACCATCATCGGGAACATCATCTGTATCGTGGGATTGTTCGTTGCATGCATCGGGTGTAGTACGGCACCTCCCGAACCATCGCCGATACCGATGGGGAAGCAGGAAACACCAGAATCACCGACCACCCCACGTCCGACACCAACCGAACGGCAACCAACAGCGACCCCTGCTGCTCCTGATCCCACCGCATCTGCGGTGATCCCGACGGCGTCTGTCGCCGAGACGGCGGTGGGTTCTCCGCTTCCACCGACCGGAACACCGGTTCCACCGACCGGAACACCAGCTCCGACCGCAGCGGTCCGCCCAACGCCTATCCCCACGATCTCCGCTGCCTATGCCCCACCGATTCCGAGCGACGTTCCCGTGCCAACGTTCGATTCGGACCTCCTGTCGATGATCGCCACCGTCGTGCAGTG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAAAAACCAAAATCCCCGCGAGGGGATTGAAAC # Alternate repeat : CTTCAAAAAACCAAAATCCCCGCGAGGGGATTGAAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.60,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 2 2967-3240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIM01000169.1 Chloroflexus sp. MS-G contig00169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2967 37 100.0 43 ..................................... AGAAAGAGTACACGACGACCAACGAGATCCTGAGGATTAACCT 3047 37 100.0 44 ..................................... GTGGGATTGCTGCCCCATCACCATCCACCGCGCTCACCAGTTGC 3128 37 100.0 40 ..................................... CACCATACACTGTTTGCGCTCGTGTTTTGATCGAGTATGT 3205 36 70.3 0 T...................T..-.C..A..CCGTTG | ========== ====== ====== ====== ===================================== ============================================ ================== 4 37 92.6 43 CTTCAAAAAACCAAAATCCCCGCGAGGGGATTGAAAC # Left flank : CATCATGCATCGCGTGCGATTCCATCTGCCCGGATCGGTGATGGGTGTTTCCTTCCCGGTCGGTATCGGGAAATACATGGCAATGCGGGGTCGTCCGATTCCTGTTGGGAACGAGACCGCAGGACAGGCGCTGACCAGCAATGCCATGGAGCCGAGTGATGCCATACGTGCATGCGACGCACGGGATGGACGGAGGAACCGTCGTCGCTCGTTCACCATGCATCCGTATGGCATGCGTGATATGTGCCATCCTCCACCATGCGGATGCATCGTCCCCGGTATCGTCGCCAATGCGAACGGGACAAGAGGTGGTGACGGGTATCGGCATGCAGGAACGGAAGGATATCGCCGAGCGCATGCATCTGCTGCGAGAGATACGCTTCGCCGGGTTGTCGGTCGCTCTCGTCACGGGTGAGCGACGCAAGCGCAAGCGCAAGCGCCAACGCCGTATGGTGGCTCAGCATCGTCATCCATGCGTGTTCACCCTCCCGTACCCGTCC # Right flank : GTTGTAAACGTCAACGATATCCGCATTAAAATCTCCCTAACACCTCTGCCGCCCCGCCTCCCATTGCCCCGCATCCTCAACTTCTTACTATCGCCCCAATACTTCTGTCACCCCCATCCCCCCCGTGCACGCAAAAATGTCGCCAAATTGTTACCGTTTTCCCCGCTTATTCCTGCTATTGTAGGTCGTATCAGGATCCGCTTCTTGAACACCGATTGGAGCACACGATGTCATCCCTGCCCCCGCACGACCTGATTGCCGCTATCCGGAATCGTGACCCCCACGCGCTGAGCTAGGTCTACGAAACCTACGGCCCACGCCTGTTCAGCTATCTCCTGCGTCGCCTCGGTGACCCCGACCTCGCCCGCGATGCCCACCACGATGTGTTTGTCCGCTTTTTGGAACGGGCCGATACCTTTGAAGACCGCGGTGTGCCGCTCATTACCTGGCTCTTCCGCCTCGCCCGCAACCTGAGCATCGATCTGCAGCGACGCCAGGGG # Questionable array : NO Score: 8.49 # Score Detail : 1:0, 2:3, 3:3, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAAAAACCAAAATCCCCGCGAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 39-5050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIM01000184.1 Chloroflexus sp. MS-G contig00184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 39 36 100.0 38 .................................... GCGCTGAGAAGCGCGTTTGATGTAGAGATCGTAGTTGC 113 36 100.0 36 .................................... TCGTTACGTCAAAAAAGATAAAGAAATACGTGATGC 185 36 100.0 38 .................................... ATCACCAACATACCATCAGACACCTCTTCTGCTGTGCC 259 36 100.0 39 .................................... GCAATATTACCAATAATACTACCGTCAGTGGTTGATAAC 334 36 100.0 38 .................................... TTAACCCCGTCTCCCGCACTGCTACGACCGTCCCGACC 408 36 100.0 38 .................................... GCGGAACAGCGGAACCGGCGACAACTTGGGATCAATTC 482 36 100.0 37 .................................... TCAACGAGCTTCAGTCGCAGCGCAGTGAGCAGCGTTC 555 36 100.0 37 .................................... CTCCGTAATCCCAACCACGCCGCCCATACACATGCAA 628 36 100.0 36 .................................... TGAAGGTTGGCCACGGAATAGGCGTATTTGTCGGCG 700 36 100.0 35 .................................... TCGCGCTGATCAAGGAGATGCTTAAGCTCGGTAGG 771 36 100.0 40 .................................... CAAAACGAAAAATGCACGCATCGTCTGCGTGAACGTGCAC 847 36 100.0 35 .................................... TGGCAAGACTCGATTGAAAGACCATCACCGCACGA 918 36 100.0 37 .................................... CGAAGGGTTCGCTGTCCGGAAGCGTGTCCGGACAGAC 991 36 100.0 35 .................................... TACCGATATCCCATCGCAGCATATCATTCCTCCAC 1062 36 100.0 36 .................................... CATCCTGGCCGCCGGGTGGGGGAACGGTCATGATCA 1134 36 100.0 36 .................................... GTATTCCACCTCCCGATCGGCCATCAGCTGCAACGC 1206 36 100.0 38 .................................... ATCCTCCGTCGGAGGTCGGAGATTCGACGTTCTGCTGC 1280 36 100.0 35 .................................... TCGCGCTGATCAAGGAGATGCTTAAGCTCGGTAGG 1351 36 100.0 39 .................................... CGCGAACTGTCTCGCGCGCAACCATCGCGCGCGCAACGG 1426 36 100.0 39 .................................... TTCCTGCCGCAATTCACGCTCGACAGTCAGGGTGTCACC 1501 36 100.0 40 .................................... TGGCGCGGATCCGCGAGCGTGCCGTTGATGTACAGCCCAC 1577 36 100.0 38 .................................... GTGGGCGCGAGTTGGTGGTTGAGTTTCGGGAGGAAGCC 1651 36 100.0 39 .................................... TCCAGTAAGTTCTCTTCCAGCGTTCCAGCGCGTATTTCA 1726 36 100.0 38 .................................... CAGCGCCGACGCGACGATTGTTGTGTATACGCTGACGC 1800 36 100.0 35 .................................... GACGTTGATACCGAGTGCCGCCCGGCCATCCCAGC 1871 36 100.0 38 .................................... ATTAGCGCTTGTCGATCATCGTGATCGAGCTGCTCGTC 1945 36 100.0 38 .................................... CGTAGTCGGCGAGAACGTTGAGGACGATTGCGGTCGCC 2019 36 100.0 37 .................................... CGAGTTCGGTTCGCTCGACGAGGCGGCGCAATCCTAT 2092 36 100.0 37 .................................... TAGCGCCCGCGGATCCAAACAGTCCTAAATGCCGTGC 2165 36 100.0 37 .................................... CATCCTCTTCACTCAGCGCGGATTGGATAGCCCAGAC 2238 36 100.0 37 .................................... TCCATTGATTTTCGCGAAGATAGCCCGTTTGTTTGGC 2311 36 100.0 39 .................................... CGTCAGATGCCCGACGCGGCCCGTTCGCGTGAGCAGGCC 2386 36 100.0 37 .................................... CAAAATTACTGCCGAAAGCGGCGAAGATAACAACGAA 2459 36 100.0 37 .................................... CGAGGCGGAGCGCGGATTCCACCCCGGCCTGCACCGC 2532 36 100.0 35 .................................... TCTGTGAATAGAATAGCAGCAAACGTTGGAACGGT 2603 36 100.0 37 .................................... ACTTTGTTTAATAGTGGGAATAGTATCTCAAAAGAGA 2676 36 100.0 36 .................................... CGTTTTAAGCGTACAAAGAAAGAGTATCTCGAACAC 2748 36 100.0 36 .................................... CGACGTAGCCCGCTAGCGCCAGCGTCTGCAATCGCC 2820 36 100.0 36 .................................... CGACTGCGGTCGCGTTGGTGTGGCTGCTGGATGAAC 2892 36 100.0 39 .................................... CTTCCGCTCTTGACGCGGGAGGCGGTTACACAAGCGGGC 2967 36 100.0 38 .................................... CTGGCTCGCGGCAGTCTGGGCTATCCAATCCACACTCC 3041 36 100.0 39 .................................... CGAACCAGCTCGAAGCTGTTGAGTTGTTTGTCAGCTTGC 3116 36 100.0 38 .................................... CGCTATCGGCGGTGCAACAGTTGGTGCAGTTTGTGACC 3190 36 100.0 36 .................................... CGCGCTACATCAGCGCGTGATTACAGCAGATATTGA 3262 36 100.0 39 .................................... ACCCAACGCGAACGACGTTAAAACAGTAATTCATCCGGC 3337 36 100.0 39 .................................... ATCGTGATTGAAATCTCTGCACTTCCGGCGCGGTATATC 3412 36 100.0 35 .................................... CGACGGGTGGGAAGCGCCGCAACGCGCAAAACAAC 3483 36 100.0 38 .................................... TCGCGGTTCGCAGTGCCGCTCGGCTGCGACCAAAGCGC 3557 36 100.0 38 .................................... GTCTCAACAGCGGGGAGGTCAATATCGATAAAACGCTC 3631 36 100.0 36 .................................... GCGAGGCCGAGCGGCGCGAGCGTCAGGCAGCGGAGC 3703 36 100.0 35 .................................... TTTCACTAAAGAGTATCCGTATAGTCATCAGTATA 3774 36 100.0 37 .................................... TTTTTCGATCAAGTAAGTGTATTGATCGAGGATGCGC 3847 36 100.0 36 .................................... CGTCGGAAGAGGATGATTATCGATATAGTACGAAGC 3919 36 100.0 37 .................................... GGCGCGTTGTTTTCTTATACTTCTTACTGATCGTCTC 3992 36 100.0 36 .................................... CGTTCTCAATGAGTAGATTAATATCTACTCTCCAAC 4064 36 100.0 39 .................................... GTGTTGGCCGAGGCCAACAGCATTGGTCAACCAAACATC 4139 36 100.0 38 .................................... TCTCAAAGATCGGACGAAGCACCTCCAGCCCAACGCGC 4213 36 100.0 36 .................................... AATACGCCGTCAGCGCGCCGATTGCGCCCGCCAGCG 4285 36 100.0 35 .................................... CTCGATGCGATAGTCGCCGGTTTCGCGGCTAAAGA 4356 36 100.0 37 .................................... TCCGAAGGAATAAAAATGAGTGGGGATACATACGTAC 4429 36 100.0 35 .................................... AATTAGCCGCAGAAATCGCGGCGCGATTGCGCGAC 4500 36 100.0 38 .................................... CTTGTTGTATTCCAACCCGTCGCCGGGGATGTACTTCC 4574 36 100.0 40 .................................... GAAACGTTGATCAACTGTACATCTCCTCGCGCCAGCCCTC 4650 36 100.0 39 .................................... ACCGTCGACCCCTCGACCATCCCTACCGCAACCGTTTTC 4725 36 100.0 37 .................................... GCTCGCGCTCGCGGATGGCGCGCAGTTCTTTGAGCGT 4798 36 100.0 36 .................................... GCATCGCAACTGAAACAAAGAATTGGGGTTGTTTGC 4870 36 100.0 38 .................................... GCAGCCGTTCGCGGTCGAAATTGCGTTTATACGATCAC 4944 36 100.0 35 .................................... CGCGCTTTCTCAGCGCGTGATTACAGCAGATATTG 5015 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 69 36 100.0 37 TTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC # Left flank : TTCTTGATGTTGCTTACTTACTTACTGTTTCTATACTCT # Right flank : CGGCACGCCCGGTCCATCCGCGCCGAGGATCGTGATCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.40,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 4155-4978 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIM01000186.1 Chloroflexus sp. MS-G contig00186, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 4155 37 100.0 43 ..................................... TCTCAACGAACCCTACGCCGCAGCCGCGCTGCTACTCAAAAAG 4235 37 100.0 46 ..................................... GCGACAATCTCTGCCGCGTTCGCCAACTCTAACCGCGACGCCGCAG 4318 37 100.0 45 ..................................... GTACTACGCGATGGTCGAGCGGGCCGGTTTCACCGTTGCGTTCAG 4400 37 100.0 38 ..................................... TGATCAAACAACATCGGCGCGCCGACGGCGCGTATCTG 4475 37 100.0 43 ..................................... TTACTTCTTCTGGAAATGTGCATTGCACATCTTCAAATGACAA 4555 37 100.0 40 ..................................... CCGACAGCACCAGCAGCAACCAATCGAACATCGCTAGAAA 4632 37 100.0 38 ..................................... TCCGGCAGGGGATTCTGCGCGCCCATGCGTGGGATCAT 4707 37 100.0 38 ..................................... CCATACGCGCTGCATCAGCGCTGGGGTCACCAGCGTCG 4782 37 100.0 46 ..................................... GAAAGTGTTGTCGCGTTGATGCCTACACCGTCAGAAGTATTAATTA 4865 37 100.0 40 ..................................... GATGGTGCGTGATGAGATTAATAGTTTAACGCGCCTAGCG 4942 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 11 37 100.0 42 CTTCAAAAAACCAAAATCCCCGCGAGGGGATTGAAAT # Left flank : CACTACGAACCATTCACAGCGCGCTAAGCGACGGAGGAGCGACCTAATGTTCTACCTCATCAGCTACGACATTAGCATCGACCAACGGCGGCTCAAAGTTGCCCGCCTGCTTGAAGGCTACGGCCAGCGCGTCCTGGAGAGCGTCTTTGAATGCGACCTCGAACCGGCAGCGTACCGTCAGCTCCGTCAGAAACTCAACCGCCTCATCAAAACAGACGAAGGCGACCGCCTACGCATCTACCAACTCTGCAACGCCTGTCGGTACCACATCGAAGTCATCGGCGAGGGGCCACCGCCAGAGACGAGTCCAGACATCTACATCTTCTAAGCGCAGGGCAAAGCTCCGGCACACAAACGGCGCGGAATTGCATCAGAACGCAGAAAAACGGCACTTTTCCATTTGCCAACCTATGAAAACTTTTTACACATTCACGTCAGCAGACACTCACCGCGCAAATAGCCCAATAGAGCCGCTTGCGAAGCGGTCGCAGATGTGGTAT # Right flank : CCACGCCAATCTGCGTTCGACGAAATACCGATGCAACATCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAAAAACCAAAATCCCCGCGAGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 38-2551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIM01000220.1 Chloroflexus sp. MS-G contig00220, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 38 36 100.0 36 .................................... AACTGCGCTGCGCGGTCAACGGTTTGCAGCAGCGCG 110 36 100.0 37 .................................... GTGTGAACGATCAGCGACGGTTCCGGTAAACCGCTCC 183 36 100.0 36 .................................... GATGAAACGTTTTCAACGCTGATCAGCGAGACGGAC 255 36 100.0 38 .................................... GCGTCGCGGTATCGGCGGACGGGTAATTTGCGGCAGAC 329 36 100.0 38 .................................... CGCTTCCGGCGCGGTATATTCCGGCAGAGCTACCGGCC 403 36 100.0 37 .................................... TCTGGTTGTTTGGGGTACGAATCGACGGCGCACCACC 476 36 100.0 36 .................................... CCGTCGCGCCCCAAACCCCCAACTGCTTCGCGACAA 548 36 100.0 40 .................................... TTCGCGGTTGAAGTTGCGTTTATTCGCTCAACGCGACAGC 624 36 100.0 37 .................................... GCTGCAAACGGTACAAACCCGGAATATCCAACGATGC 697 36 100.0 36 .................................... CGGCAAATTTTGAAAGCGCGCTGTACGCATTCGAGC 769 36 100.0 37 .................................... TCGCACGCGATCTGTATATCGAAGCACAACGTCGCGC 842 36 100.0 38 .................................... TCGCCTTACTGACCGCGTTCCGGTGCGTCTGGATCCGC 916 36 100.0 36 .................................... GTTATCTCGATCTGATGTACTCCCGGGTACGGCCAT 988 36 100.0 37 .................................... ATCCGTTCGTTGCGCGTGTCACCAGTCGGTCGATGAC 1061 36 100.0 37 .................................... ATGTAATCGACCAGGATGCCCGACAGCTCGACCTGAT 1134 36 100.0 37 .................................... CCTACCGGCGTGCGATCCCACAAGTAGCCTTCAACGC 1207 36 100.0 40 .................................... CATCAACCATCGCTCGCGCAACCATCGCCGCATCAACCAC 1283 36 100.0 37 .................................... TCGTCATCCACAAGCTCACATGGTCGCGCTGGTCGAA 1356 36 100.0 36 .................................... TCTCAAACCCGCAAAACGTTAACTGCATTCCTTCGC 1428 36 100.0 37 .................................... CTGTGGACGCTCGAAGGATGGCCGTATGCGGGTGTGC 1501 36 100.0 39 .................................... TGCACCGGTTCCCACCGGATGGGGTGCTCGCATATCGTC 1576 36 100.0 36 .................................... GTTATCTCGATCTGATGTACTCCCGGGTACGGCCAT 1648 36 100.0 37 .................................... ATCCGTTCGTTGCGCGTGTCACCAGTCGGTCGATGAC 1721 36 100.0 35 .................................... GACGGGTCGCCACTTGCCGATTGCTTGCCCCGCGA 1792 36 100.0 35 .................................... TTAAAATTTTCTAAAACGAGATTGCTGGACACAGC 1863 36 100.0 35 .................................... CGCAATTAGTGCTATCGCCAACCGAGCGCTTTGAG 1934 36 100.0 37 .................................... GAAACGATGAAAACGTTTGCGACACTGATGCCGTCGC 2007 36 100.0 35 .................................... GGGTGACCGCTTCCCGCGTCAGCAGCGGGAGTGGC 2078 36 100.0 38 .................................... GTTGGGCCAGATCTTCAGATTCAGCCTGCAACATTTGC 2152 36 100.0 36 .................................... GATCGGCACGCCCAAGGCGGCGCGGCCGTCCCAGGC 2224 36 100.0 38 .................................... TCTGGGTTCGGGGGCGGTACGGCGGCGGGAAAACGTCC 2298 36 100.0 36 .................................... ACGACGGCACCGAGACCGTGACCGCGGTCCACCCGC 2370 36 100.0 37 .................................... TCGAACCACACCCGCAGTTGTAGGCCGCTCCAATCAC 2443 36 100.0 37 .................................... GTCGGTTCGGCAGTGGTTGGAGGTGTCGGAGTGGGGC 2516 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 35 36 100.0 37 TTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC # Left flank : GACTATCGTCTTCTTTTATTACCAATTCGTCACTGTCT # Right flank : ATCAACCATCGCGCCTGCAACCATCGCCCCATCAACCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.40,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 43-450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIM01000246.1 Chloroflexus sp. MS-G contig00253, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 43 37 97.3 38 T.................................... CGACGCGTTCAACATCAGCCCGGTTATTGCGACAACGG 118 37 100.0 38 ..................................... GTGTCGCTGCGCAACTTCACCCTCGTCCATCGCCGCAG 193 37 100.0 37 ..................................... GCTCGTGCACACGAGCGGGTTGTTTGTGTGTGAAGGA 267 37 100.0 38 ..................................... CGCGCCTGCGTCAGCGCGGTTGTGACCAAGCCGACGCC 342 37 100.0 35 ..................................... GCGCGCTGCCCGCGACCGCCTCGAACGCATATAAC 414 37 94.6 0 ...................................GT | ========== ====== ====== ====== ===================================== ====================================== ================== 6 37 98.6 37 CTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC # Left flank : ATCTTGCCAAGCGTCATGTCAGTTCACAAAGCGCTCACCAACT # Right flank : GGAACCCCGGAAAACCTTTGCGAACGACCATGAATTCTGCATACGATGGAAATGGGGCGGGTTGCGCACCCGCCCCATCTGTGTTTAGCATGTCATTCTAAAAGGACTTCGGTCATTATCAGCCTTTCCAGGCTGTTGGTTGCCACGAGTTCATTTTTCAAGCGATCAACGCACGGATTGCATGACGAATCGCTTTGGGGTGCCAGAATGGTATCGATGGTAATGACCGATTGTCTTGCTCGTCGAGATCGTCTATTGGCGAGATGGGTACGTCAGATGAGTCCGGAGGTGGACTTGCTGGCGGTGGAGGGGGTGGCGAGGTGTTTGTTCTGCGAACATAGTGATGCGAATGCTTCATGACTGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACAATTTCGGCTCACGGTAGAGCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.40,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 44-1553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPIM01000226.1 Chloroflexus sp. MS-G contig00226, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 44 37 100.0 42 ..................................... TCAAAGACGCGATTAAGGCGGGCTGGCGCAACATTCTTGAAA 123 37 100.0 34 ..................................... TTGAGACGCAGCCAGCGTTCCGCTATCCTCGTCT 194 37 100.0 45 ..................................... GTATGATCCCCGCCAGACGCTCTGCATCAAACGCCACCAACGTAC 276 37 100.0 40 ..................................... ATGATCGAAAGCGTACTGACAGAAGAAGCTCGCTGCGCAG 353 37 100.0 41 ..................................... CTTTCAATCGTTGTATGAATTGAGAAACAGTATCTCGTTCG 431 37 100.0 40 ..................................... GCGCTTGATGTGGAACATCAGCGCAGCAGTAACGCTGTGA 508 37 100.0 40 ..................................... ATCAGCCTGCCACTCACCATCGCGGGCGTCGCTGATGATG 585 37 100.0 39 ..................................... GATTACACATCCACTCTCTGTCTGATACACATAGTACGT 661 37 100.0 41 ..................................... CGCGCACTTTCAGCGCGTCATCACTGCTGATATTGATATTC 739 37 100.0 47 ..................................... CCGCGCAAACAGATGCGACGCTCGCTCTAGTGCAGCGTATGCTTCTG 823 37 100.0 37 ..................................... CACGTTGACCGTGTACGGCCCCCGGCCGGAGCCGTAG 897 37 100.0 43 ..................................... CAGCACTCGCATCTAGTGCGAGATACTGCCACGCTTCATCCAG 977 37 100.0 43 ..................................... TATCAATATTGTGTAGCGCGAGCGCGGTATCGCTGATGTTTGT 1057 37 100.0 40 ..................................... ATAACGTATCGAAAAACGTTTCGTTTAAAACGTCTTCTAA 1134 37 97.3 38 ....................................G CCCATCTCCACGCGCACGCTCGCACCCTCGATCCCTCC 1209 37 97.3 41 ....................................C TCAGCTTGTCTCGTGCGCGAAACATCTCCGCGCACTTCTTG 1287 37 100.0 42 ..................................... AGCGACGTTACGCGCCGAGGGATGACACCGGCGTTTTCGAGA 1366 37 100.0 40 ..................................... ACCATAGTGGGGGCGGGTTTCAAACCCGCCCCCACTACGG 1443 37 100.0 37 ..................................... GGACGATCATCATACTGCTTAAGAACAGGCAAGCTTA 1517 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== =============================================== ================== 20 37 99.6 41 CTTCAAAAAACCAAAATCCCCGCGAGGGGATTGAAAT # Left flank : TCTCGACCAGCAGTCGCGCTTCCCAGCGAGTGGCGCGATAACCC # Right flank : CAGAATGGAGACTGCCATGACCATCAACAATCCAACCGACATCACTTCAAAAAACCTAGACCGGCAAACCTGAGGTGAGAAACTGCTGCTCCAGGCCGCGCACATAGGCGTCCGGATCGCGGCGGAAGCGCAGACCCTGCGCACGGGTGGCGAAGCGTGCCCGCACCGCCTGGCGCACCTCGCGCCAGGCAGCGACATGTGATGGCGCCAACGCAGCGGCCGTCCAGCGCTGCAGCCGGCTGGCGACACTCGTTCTCAGGCGCACTGGGCCACGCAACACCGTGTCGGGCGTCCCCCGTTTCCGCCCAGTCGTACGGCGCTCGTGATGACGATGCTGCCCGAAGCACTGCGCCAGTCCATGATTTGTGCGCGGGATGTCCCGATGCGTATCGCAGTGGAACAACCCCGGCGCGTCGCTGCGCGTCCCCTTCAGGACGTGCGTCAGCGCACCTTCCAGCGTGCCACCGTGTCGCTTCCCCAGTCCCATCCGTCGTCGCACC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAAAAAACCAAAATCCCCGCGAGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //