Array 1 193804-195575 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRJA01000001.1 Providencia rettgeri strain AFE71_S2 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 193804 28 100.0 32 ............................ ATCAACAAGCTGCTTATCGAGCATAAAAGATT 193864 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 193925 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 193986 28 100.0 32 ............................ ATCCTGACTTAAAAAAATTTAACGATGATTTA 194046 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 194107 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 194167 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 194227 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 194287 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 194347 28 100.0 32 ............................ AGTACGCCTTGGCGCTTTTGCTCTCACTTCAT 194407 28 100.0 32 ............................ AAGCTAGCATCAAGTAAGATACTGACCGTAAT 194467 28 100.0 32 ............................ TCACAGGAATAGAAATCGAAATCGGTTCACCC 194527 28 100.0 33 ............................ GTTGGCATTTCTTTTAGTTCGACTTCGGAACGA 194588 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 194648 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 194708 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 194768 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 194828 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 194888 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 194948 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 195008 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 195068 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 195128 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 195188 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 195248 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 195308 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 195368 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 195428 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 195488 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 195548 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.0 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 204213-205203 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRJA01000001.1 Providencia rettgeri strain AFE71_S2 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 204213 28 100.0 32 ............................ CATAACTTCAATCTGTTCTGCTCGAACATCTA 204273 28 100.0 33 ............................ TAGAGCAAAAAATATGCAATTAGCTAAATTAGA 204334 28 100.0 32 ............................ CGTATGCACTTGCTGTTTCGAAGTGATTACTA 204394 28 100.0 32 ............................ TGTGCTTTTGCTGCTTCCACTTGTTTAACATT 204454 28 100.0 32 ............................ GCACCAACTTACAAAGCCGTACCTTTACCACT 204514 28 100.0 32 ............................ ATAAAAACCTGTCGTTGCTTGCCCCGGTAAAC 204574 28 100.0 32 ............................ TGCATGTTGCGCTTCCTTAAACACGTCGATTA 204634 28 100.0 32 ............................ AGCCCAAAGAGGGTTAACCAAACCACTACTGG 204694 28 100.0 32 ............................ AGTGCTATACAACAAAACTGGCTCGCCTATTT 204754 28 100.0 33 ............................ GCTTGCACTGCCTGCGCTATTTTTGGCTTGTTC 204815 28 100.0 32 ............................ GCTATATCCTTGTAGTACTGGAACTTTATTAC 204875 28 100.0 32 ............................ ACTAAATGCCAGTAGGCAGGAGTTTTAAAATG 204935 28 96.4 32 ..........A................. AGAACACTTTAACCGTATCGCTATCAATCGAT 204995 28 100.0 32 ............................ CCCATGTATAAACTCACGGCCTAATAACTTAG 205055 28 100.0 32 ............................ TGTCGAAATTCAAAACTGTCAAAAGTCTTATA 205115 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 205175 28 89.3 0 ...T......A.........T....... | G [205201] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATGATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAATCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //