Array 1 1866349-1863940 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046629.1 Streptococcus equinus strain CNU G6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1866348 36 100.0 30 .................................... GGAGGTATATTTATGGAGATCAAATTATTA 1866282 36 100.0 30 .................................... AAGTATCATTGATAAGAGACTCATGTGTCA 1866216 36 100.0 30 .................................... AATTTGATAAAAAATTCAGTCTTTGCAGCT 1866150 36 100.0 30 .................................... CTTCTTCTTGAGTAAATACATCATGTGCTA 1866084 36 100.0 30 .................................... AAATTACTCTAACGTCGCAAAATGCGACAT 1866018 36 100.0 30 .................................... TGATTTAAGCAATTCTTTTTGTGTTTTAGT 1865952 36 100.0 30 .................................... AATTTACTGATTTAGAACTAGAGATGCCTT 1865886 36 100.0 30 .................................... AACTAATCTCAAATTTTTATTATGAAGATT 1865820 36 100.0 30 .................................... TTACCAGATGATTACTGTAAGAACGAATAT 1865754 36 100.0 30 .................................... AATGGTGTGACTTTTCAACAAATTTATTAT 1865688 36 100.0 30 .................................... TGCATAGTCTTTCAACACATCTTTAACCTG 1865622 36 100.0 30 .................................... TTAGATAGTGAGTATATTTATTATGAGATT 1865556 36 100.0 30 .................................... TCGTTGCTTATGGTTATATAATAGCACTGT 1865490 36 100.0 30 .................................... AATGCCTGTATGAGTACCGCTTACATAAGC 1865424 36 100.0 29 .................................... ATTTTTTTAAATTATTTTTTGTTTTGTTG 1865359 36 100.0 30 .................................... TTTTGTTTCAATATCAAAATAATCACGGCT 1865293 36 100.0 29 .................................... TAATGTATCTGTATTAGATAGAATGTTTT 1865228 36 100.0 29 .................................... CACTATGTGACATCTCCATCCACTTATCT 1865163 36 100.0 30 .................................... ATTTTGATTACGCTAACGAAACTTATTCAA 1865097 36 100.0 30 .................................... TAGCTAGTATAAAAAATAATATAAATTATT 1865031 36 100.0 30 .................................... TATTGGAGCATAACCCAAGACAATTTAAGA 1864965 36 100.0 30 .................................... CTATGGGTTAATTTAAGGAGGTATAAGACT 1864899 36 100.0 30 .................................... TATTAAAAAATTATGGATGAAAGAGTATCA 1864833 36 100.0 30 .................................... GCTGTTGTCCTATAGATGAGTTAGAAGCCT 1864767 36 100.0 30 .................................... TATTGGAGCATAACCCAAGACAATTTGAGC 1864701 36 100.0 30 .................................... AAGTGGACTGAAGTAGAACACCTTGTGTGT 1864635 36 100.0 30 .................................... AAAATTCATCATCTCCAGTCTATATGGCTG 1864569 36 100.0 30 .................................... TGTGGATTCAGAATCCATTAGTTGTCACGC 1864503 36 100.0 30 .................................... TATAATTCCATACGTTGTTTATATGGCAAT 1864437 36 100.0 30 .................................... TTCCATCTCAATGGTAAGCGCTCAGAAGCC 1864371 36 100.0 30 .................................... TTTTGTTTCAATATCCATATAAGCACGACT 1864305 36 100.0 30 .................................... CATAGTCAAGGCTTTCAAAGTCTGCCACAT 1864239 36 100.0 30 .................................... AGTGAACTTAGTAAAATGCAGGTAAGCCGA 1864173 36 100.0 30 .................................... TTATTACAAAATGTACCGGGAGCATCTTAA 1864107 36 100.0 30 .................................... TGCTTACATGAGTACCGTATTATGACATAC 1864041 36 100.0 31 .................................... TTGGTTGAATCTGGTTATGCTCAGCTATTAG 1863974 35 80.6 0 ......................CAAC.T.A-..... | ========== ====== ====== ====== ==================================== =============================== ================== 37 36 99.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Left flank : ATGGATGACTATCTTGATTATTCTTCATTTATAAGAATTTGTGAATCTATTACTCAGATAACAAGTGAGTTTCCAAATTTTTACTGTACTATTTTTCCTTCGAATGAAAGTTATTTATATGTTACAAAAGAAACAATAGAGTCTGTTACAATTGTTTCGGATTATATTGAATCCTTATATGATCTTGATTTTATGTATGAAAGATTTGTTGGAAGATATCCATCGAATAATATACCAACGAAAAAAGAATTTTTAATTCTGCTACAAAAAAATGCAAGTTATCTATTTAGCGATCAAATCACGTATGTGAGTTTAGGAATTTCAGATATGGTTGCTATTAAAATACTTAATAGCTTATATCAGTATGATAAGAAGTTAAGTTATCCTATTCCTTTGGTCGACCCGCTTGAAATCAGCTTTTTAAAGGACAAAGATTGACTTTTTTGTTTAATCAAATTATAATTCTTGTAGGGTACAAGAGCTAAAAATGACGATTTGAG # Right flank : CCCACCTAGTTCGTCACTGGGTGGGGTAATCTATGTGGGTCATAGGTTTGCGATGAGTTGAGTTTTTATTACCTTTGGTTAAATAATAACGCTTTCTGCAAAAATTGTAAAATGATTTGCGGTAGCTGATTTTAGCGATATTTATCGTGCCTAGAAAACTTTTTATAGCACCAGTGGTGTTTATTTGTTATAATAGAAATAATGAATAATTGTATAGGATTATAGATAGATGGATATTCAAGAATTAAAAAAACGACAAGAAAAGATTCGCAATTTCTCAATTATTGCGCATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAAACTGTCTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAACGTGAACGTGGTATCACAATCAAATTGAATGCGATTGAGTTGAACTACACAGCTAAAGATGGCGAAACTTACATTTTCCACTTGATTGACACGCCGGGGCACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACCGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 83382-83147 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046630.1 Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 83381 37 100.0 29 ..................................... TTGCCTTTTAGAATTTGTCCAACGGTTGT 83315 37 100.0 29 ..................................... AACCAACTAAAACAGTCACAGATAAAGCA 83249 37 100.0 29 ..................................... AGGAATAACAACATAGTTAACTATATTGC 83183 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 GTTTTGGCACTAGTCTATTTGACATGGTTCCAAAAGA # Left flank : TTTAAATTCTGACGAGGTATGCTACTTCTTAGTAAACAAGTATAATACTCTTGTCTATTTAGGATTTTATTTAAACTCTCGTGATTTAGCCCTTCCTTTTCTTAACGAACCTTTTTATAAAGCATTATCAATCGTCTATCCGTTACTAAAAGAAAGCTATAGCGATGTTACTGTTTTAAACGACAAATATTACCAATTAGATTCCTCTCTTTATTGTGCTCATTGCCATAAAGAGGTCAGTACATATCCTATAGAATTAGGAATGGTTGATTTTAAACGAAAGAATAAGGCTAAATAGGGGGCATTCTGCCACCTATTTTTTTGCTGATATTTAATTAAGAAGTAAAAGTAATAGATAAGTATCAAAACTATAAATTTTATAGTATAATATTGGTACGGGTTATTTGGGACCCGTTGTAGCAATACAAGAATCGTGGCTCTTCCTGAGGACATCTGCGGATATACCGAAGGGATCCACCCTGTCAAGACTAGCTTCCGAG # Right flank : CTTAAAAACAGAACTGTCAATTAAAAAATGTTTTGGCACTAGCCTAGTTTAGAAAACACCTTAGGGTGTCTTTTTTTATGCCCTTTTTTGAAAAATCTATCATAGGAAAATCACATTGTATTCCCATAATTTATTAGCTATAATAATTTCATTCTGACTAAGAATCTTACAACTTTAGTTGTGAAAGTATCAATATGATAGGATTATTTTCTTTAAAAACTCAAGATTATTGTTACATAGGGACGTCACGCGCCACCAACTTATATTAATAATGTAATGGCTAGCAGCAAAAACACTGCTATCTTGAGTCTTTAATAATTTGAATTATCCTTGAAATCCTAAAAATAAACATTTATTTTAGGTTAATTGTTGATCTTTCAGAATCTATTCACAAAAAAGGAAAAAGCGAAATAGGGTATATCATGAATAGATTGGAATGGTTAATACTAATGTTAGAAGAAAAAAATATTGATTTAAAACAATTAGGTGGTCGTATGCGT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGCACTAGTCTATTTGACATGGTTCCAAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //