Array 1 1589834-1589534 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009211.1 Corynebacterium imitans strain DSM 44264 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================= ================== 1589833 24 100.0 45 ........................ ACTTGGCGTGGGTGGAAAATGCCTGGTCGTGGGTCGCCGAAACTC 1589764 24 100.0 45 ........................ GTCGCAAGTGAGTGGAAAAACCCTGGTCGCGGGTTGGCGTGGTTG 1589695 24 100.0 45 ........................ ACCGTGGGTGGGTGGAAAATGCCTGGTCGTGGGTTGACGGGGTCT 1589626 24 91.7 45 ...G..............G..... GCTGTGCGCGGTTGTAAAACGCCTGGTCGCGGGTTGGCGGGGTTC 1589557 24 95.8 0 ...G.................... | ========== ====== ====== ====== ======================== ============================================= ================== 5 24 97.5 45 CTAAATGGAGCTAGCTCCATTTGG # Left flank : ACCACGACGCCGATGGTGAATGCGATCCAGACCGTAGGCATCAGCCAGCCGGACGGAGCGAGGTTGGTTGACGAGAGCACGGAGAGACACGTACACACCGCCATGCCGAAGATGGTTTGTGCGACGAAGGTGCCTGTCTTATCGGTGAGTAGTTCGGCACGTCTTGCGTTGGCCTCCGAAAACGGGATCGGGGAGGTGGACGGTATGTTCGCGGTGCGGCGGACCAGGGAACGCGGCGGCACGCAGCAGGCGACCGCGGCGGAGAGGACCGCGCCGATCCAGATCAAGGCGGTCGCGGCGAGGAACGACTTCGGCTCGTACCGGTCGGGGTTGCCTGCGGCGTCGAAGTGCACCGGGATTGGATCCGGGATGGAGTCCCACCGCAGTAGCACGTACGCCAACGTGGCGAGGTAGACGAAGATCGTGGCGGCGTAGTACTGGCGGGATTGCATGGTCTGAGGGTAGCAGGGGCGGGTTGGGGTGGTTGCTGTCTGCGGTTG # Right flank : GTGTGGCAGGGCCCCGGCGAACGCCGTATCCAAAGATGATCGTCAACCATCACTGGACGAAACGAGCGAAATATAATAGAAGGAACAGTATGAATTCGACGAGAAAGCAGGAGCTGGCGAACAAGCTCATGGATAGTAATCGGCAAGAAGACAGGCTCGCACATCGCAAAAGGCCGGCGGCGTACCGCAAGGTTTCGACGCGGTTTTTCATCAAGGTGACGGAATGGGAACAGTTGCGGTACCACGAGAAACGGTGGCTGGCGGCGTATGCGGTCGGTTGTACGGTGCCGCGTGCGGTGCTGTCGGGCCGGTCTGCGGCGCGGATCCTGGGGATCTGGGTGATCGCGACGACGCGCGAGCCGGTGGAGCTGGTCGCACAGCGGGGGAAGGCGCCTTCGCGGAAGCAGTGGCCGACGGGTGTGGTCTACCGGGACAGGTCGCCGGGCGACGCAACCACGCAGCACTTCGACCGGCTACGCACGACCGACGCGCTGACCACC # Questionable array : NO Score: 2.94 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTAAATGGAGCTAGCTCCATTTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1639193-1638963 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009211.1 Corynebacterium imitans strain DSM 44264 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================== ================== 1639192 23 100.0 46 ....................... GGGTCTTCGTCGGTTGTAAAAGCCCTGGTCGCGGGTTGGTGGCTTG 1639123 23 100.0 46 ....................... TGACTTGCGATGTAGGCAAATCCCCAGGTCGCGGGTCGCCGGTTTC 1639054 23 100.0 46 ....................... GGGTGTGCAGCGGGTGCAAAACGCCTGGTCGTGTGTCAGCGGTTCT 1638985 23 87.0 0 ..C.T.................C | ========== ====== ====== ====== ======================= ============================================== ================== 4 23 96.8 46 TCTAAATGGAGCTAGCTCCGTTT # Left flank : TTCCACACGCTCTTCCCAGGCGGCGAGGCTCGCCTCATCCTCACCGAACCCGACGACATGCTCGCCACCGGCATCGAGATCGAGGCCCGCCCGCCCGGCAAGAAAGTCAAGCGCCTGTCCTTGCTTTCCGGGGGCGAGAAGTCGCTCACCGCGCTCGCGTTCCTCGTGGCGATCTTTCGCGCGCGCCCGAGTCCCTTCTACGTGCTCGACGAGGTCGAGGCCGCGCTTGACGACGTCAACCTCCGCCGCCTCATCGCCCTCCTCAAAGAACTGCGAGAGGACTCGCAGCTGATCGTGATCACGCACCAGAAGCCCACGATGGACGTGGCGAACGTGCTCTACGGCGTGACCATGCGCGGCGACGGCGTGACCCGCGTGCTTTCGCAGCGCATGCAGCCGGCGGCTGACTAACAGCGGTTTTGCAGCGGTTTACCTGACGCGGGTGCTCTAACGGTTTTCCTGACGCGAGGTCCTAACGCTCGGTTCCTCACACGGGTCTT # Right flank : TTATAGGAATACCTGGGAACTCGATGGATAGAACAGCGGCTGACTCGCCTGGCCATTCGATTCACTATGGCACTATGGGTGCCATGGATATGGAACTCGCAATGAACTCGCCACTTCTGTGGATCGTTGTTGCCATCGTCGTCGTTGCTCTCATCGTTTTGGGCATCGTCGTGGTGGGACGCAAGCGTAAAGAGGAAAAGACCGTCTCTTTTGCCAAGACGGAGGAGCCGAAGGAGCTCACCCAGCAGGAGAAGTCCGGCAATTACCAGGCCAAGGGTGGCTTTAACTTCGCCCCGGCCGCAGCCCCCAGCACACCGGAGAAGGAGCCGGTGCGTATCGACGAGCCGCGCGAGCCGAAGCCCGCACAAGAACAGCAGGCGGCTGCCGCAGCCCCGGAGCCGGTAGTTGAACCGGACCCGTCGGCCGTTGAGGAAGCAGCCAAGGTTGAGGATGCCGCGAAGGTAGAGAAGACGGCTAAGGTCGAGAAACCCGCGAAGGTT # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCTAAATGGAGCTAGCTCCGTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-1.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 2438959-2441089 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009211.1 Corynebacterium imitans strain DSM 44264 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2438959 36 100.0 35 .................................... GAAAAGCGAGGTTTCCGGCAAATTCACCCAGTCAA 2439030 36 100.0 34 .................................... ACCCAATGGGGGCACGATAGGGAGCCGGAGCTTG 2439100 36 100.0 36 .................................... AGGACATTGCCAACGGCAACGGGGAACGAGCGGAAG 2439172 36 100.0 37 .................................... TGGCCACCCAACCAGGCACACAGCCTGTTCGAGAAGG 2439245 36 100.0 37 .................................... TAATGAACAAGTTCAAGGGTCGCCGGGGGAATCCCCC 2439318 36 100.0 36 .................................... GTCACGCACCTAGACACCGTCGCGACACTCGACCAA 2439390 36 100.0 36 .................................... GCCTGCGCGGACGCGACTTCCGGCTTGTTCGGGTCG 2439462 36 100.0 39 .................................... CTCATGATCATGGCCGACGGCACCGAGACCGAGGTCGAC 2439537 36 100.0 37 .................................... TTGAAAGGTCTGGTCCGCATGGCTTTCTCAATTGACG 2439610 36 100.0 36 .................................... CTCAACGCGTTCACCACCAAAAACTCCCCCTCCGGG 2439682 36 100.0 35 .................................... TGCACACCCCAGCCCCGCTGGTCTGTCAGACGCAC 2439753 36 100.0 38 .................................... GGTTCTGCCGACGACATCAAGCGCAACGTCACCATGGC 2439827 36 100.0 36 .................................... ATCTTCAACGGCTTCCGGGTGGGGCCATGCGGCGAA 2439899 36 100.0 35 .................................... GTCATGCACCGCGGGCGGGGGTTCTGCACGAACTG 2439970 36 100.0 37 .................................... GACATGAAAGTGCACCTTAAGGGCGCGACGCACTGGG 2440043 36 100.0 36 .................................... GTCGTCATGGGGCCGTACAGCCTCAACGGATACATC 2440115 36 100.0 37 .................................... CGGGTAAATGTGGTCGATGGTTAGGTTCTCGGTCGTG 2440188 36 100.0 34 .................................... ACCGTGCCCGCTAGGAATCTCCAGCGTGCCCAAC 2440258 36 100.0 38 .................................... GCCACACCTAATCCCTGCCTATCCTCTGCACGCGATCG 2440332 36 100.0 38 .................................... ACAAAACGCGGGCCTGCAGAACTGATCATCACGGAGCT 2440406 36 100.0 35 .................................... AACCCCAACATGACCGCGTCGATCAACGGCCACGA 2440477 36 100.0 35 .................................... TTTTGGGGACGACCCAACGAGCAAGGCGCGAACCG 2440548 36 100.0 37 .................................... TGTTGCGCGGCGGCTTGGGGGTCGATTTCCGGGTATG 2440621 36 97.2 37 ..................G................. TTCGCAAAACGCCTGGAAGACACGCGGCGCACGTTCC 2440694 36 100.0 36 .................................... GACACCGCCTCCGATCCCCCGCCGAACGCCGGCAGA 2440766 36 94.4 35 ..........A.....................T... TGGTCGACCTCGATCGCGCCGGGCGAAAGCAAGGT 2440837 36 100.0 35 .................................... ACCTGCTCGAAGAACATGTGCCCATACGCCAGCGC 2440908 36 97.2 34 ............................G....... TTCTTCGCTGTCTCCGGCACGATCTTGACGTACT 2440978 36 97.2 35 .................................A.. CCACACACCAAGTGCCTCTTCTTCCTTGGCCCGAC GGACA [2440994] 2441054 36 83.3 0 .........TG..T.A..................AT | ========== ====== ====== ====== ==================================== ======================================= ================== 30 36 99.0 36 GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG # Left flank : TTCGATGAGTCGGGACGATACACGTCGAACGCTTATCTGTTACGACATCATCAATGATCGTCGACGCACACGCGTCGCTGATGCACTGTCAGAATTCGGAGACCGGGTGCAGTACAGCGTCTTTGTTGTGGATATCTCACCCGCCAGACTTCTACAAGTGAAGTCCCGCCTGAGCACGATTATCGAGCCAGGCGAAGATTCCATACTTTTCTGCGACCTAGGCCGAGTAGCAGAACTGAGCGAAACAAAGTTTGGGTATCTTGGAAAGTCGCGGGAGGTCACAGACAATGACGCACTGATTCTCTAGCAGAATTGGTGGTAAAGCTACGAGCGCGCCGGTGTCACGCAAACCCTTGGCTTGCGCTCGCGCAGTGAATCGCCTGCTCAACATTGAGAACTCAACAGTGGATGACTTTTGAAGCGCAACGTCTTGTAGAATCGTCTTCGCACTCGCAAACCGCTGGATTTCCCCTGTTCACTGGTGCTGTTTTTCAGCCCCA # Right flank : TCCTTGGCATGAGTCATCCTGGTGGTAGCAATTCACGGGGCGCTGTTTCTTAAAGGACAGCGGGGCGTCGATAAGCAATGGCCCCTGCGGTAGCGTGGGCTGCATGACTGATGCACTCGCGCCCAAGCCTGAAGACCTCTCGATAGACGCGCCGCCGGAGCTGCGCGCGCAGCTGACGCACCGCACGATCCGCGAGTTCACCGATCAGCCGGTGACCGACGAGACGATGGAGACGCTGTACCGCGTGGCGATGCGGACCGCGAGCTCGCGGGGGATGCAGCACGCGAGCCTTATTCGGGTGACGGATCCGAAGCTGCGGGAGCGGCTTGCCGAGATTGGTGCGCAGGAGTACGTGGGGCGGGCACCGGTGTACTTGGTGTTTATTGTGGACTCGGCAAGGAACGCCGCCATCCTGCGGGAACAGGGCTATGACCCGGCGGCTGCGGGCAAGACGAAGGTGTTCGTCGAAGGCTTTACCGACGCCTGCCTCATGGCCCAGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //