Array 1 255119-256134 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMZW01000002.1 Paenibacillus dendritiformis strain F-A1 NODE_2_length_1013837_cov_147.338848, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 255119 32 100.0 33 ................................ ATGTATCTGTCCGCATATCCCTTACGGATCTGC 255184 32 100.0 34 ................................ ATGTATGAGAGTTCGTTCGCCAGTTTTGGCGGCA 255250 32 100.0 34 ................................ TTGCCATGTGCTGCCGTTCCAGTAGACCCGGACG 255316 32 100.0 33 ................................ TTGAATACCCAACCTTTACCTTCCTCTTCGTAC 255381 32 100.0 33 ................................ GAGAATTAGCGTCCATTTTAAAGGTTGAAGCAT 255446 32 100.0 33 ................................ TTCCTCAACGAAGTGCAGCGGAGTTTCTTGCGT 255511 32 100.0 34 ................................ TGGATCGTAATAGTCATCCCGATACAGGAACATG 255577 32 100.0 33 ................................ GCTAATTTTCGTGTGGTGCAACGCCTAAACCCA 255642 32 100.0 34 ................................ GATTAAATTTACGCCGCAACCGGAATTTTTTAAC 255708 32 100.0 35 ................................ TCCATCGATTGCGACTTGCTTTAGATCCTTTTCGA 255775 32 100.0 34 ................................ AGGACCCGGACCAAATCCCGGCGTCGGGAGTACA 255841 32 100.0 35 ................................ TCGTACTGCTCCATCGTAATGCACTTGCCAGGCTC 255908 32 100.0 33 ................................ CCACACCCCCAGCTAAGAGTGAGTATGAAATTG 255973 32 100.0 33 ................................ TGATGGTAGCAATCGCGAACGCAAAAAAGAACC 256038 32 100.0 33 ................................ TCCGTATCGATGTCACGCAAACGAAATAAGAAG 256103 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 16 32 100.0 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AGGGAGCATAGTTGGTATGGGGGAGTTGTGGTGATCTCGTTCAAGCGGTTGGAACCTTTGGATAGAGGTCATTTGCCGCTCCTGGCGGCATGGTTCTAGGATGCGGAAGCGAGTGCGGGAACAAATGGACGGGATATTTCGGTTGGAAATGGTTCGGTAACACGTTGAGCAATGACACCCTGTACGATGTGAATGGATGCGGGAAGTAATGGAGCGTTGCATATACGGACTCAACAAGTACTATATTATGAAACTGCAAAATGTGGTAACTTATAGATATAGATTTACCGATAGAGAAGCCCCCATGTTCTAGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATAAAATTTCTATATTATAGGTAAAGTCCATTTTATGGTTTGTTGTAAAAGTGAGAAATGACCTTCTTTAGATGATTCTATAGCTAATTTGATTTGTTTAATCATAACAAGAATGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : TCGCGCCTTGAGAGACAGAGTACTTGCGACTATTCGTCGCATCCAAAACATATGAAACCCAAAAAGCATCCTACCCCCGTATCAAAAGATGACGCGGGGGCAGGATGCTTGTCTTTTTTTGTAGAACATATGTTCCCTGACAGGCTGTTGTCACTTTCTTCAACCATACTAGAATTTATAGTATCAGTACGAAGGAAGGTGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAGCAGCAACAATTGCATCCAAATGTGGTGCCATATTGGCGAATTTATCGGCTTTTCTCTGCATTGAAGCGGACTGCGCTGGCAAGCATCCCGATCATCGTTTATTTGATGTGGTTGCCCCAATGGAAGTGGATCCTATGTGTTGCTGCGGCCTATCTCTTGTTTCATTGGAGCAAAGACGTATTCTATATCATATATGGAGTTCGCTTCAGTTATGCCCGAAGAAGTTACGTCCTGACAACGGATGAGATTGTGATTCGGTGGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 267848-268339 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMZW01000002.1 Paenibacillus dendritiformis strain F-A1 NODE_2_length_1013837_cov_147.338848, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 267848 32 100.0 34 ................................ CCGATCGTCTTATTAATCGACTGGTCGTCCTGGA 267914 32 100.0 33 ................................ TTCGCGGCAGCCGTGCCATTCGCAGCGGCCGTA 267979 32 100.0 33 ................................ GTCTGGCCGGCTGAAAGCAGCAGCGCCGTCAGC 268044 32 100.0 33 ................................ GGGCGTTGATAGCGGAGACTTCGTATACAACCA 268109 32 100.0 35 ................................ TGACTTTACAAATGACCACAATAAAGATATATTTC 268176 32 100.0 34 ................................ TCCGAAGATTCTGGCGAAAGTACTCCACTACAGC 268242 32 100.0 35 ................................ TTGGAACGCCTGAACATATTTGCGAACCTCCTCCA 268309 31 75.0 0 ...........T......AT.-AA...A..G. | ========== ====== ====== ====== ================================ =================================== ================== 8 32 96.9 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CCTCCATTTCTCTGGAAGTAGGTGGTATAATTGTTGGTACTAATCACTTATGATGTCAGCACGACCAGCATTGCCGGGCAGCGCAGGTTACGTAAAGTCGCAAAGTTATGCCAAAATTATGGTCAGAGAGTGCAAAACTCTGTTTTTGAATGCAATGTAGACGCAGCTCAATTCGCCAGCTTGAAGATCCAACTTATCGATATGATTGACGAAAAGGAAGACAGCCTGCGATTTTATCAATTAGGAAACAACTACAAAAGCAAGGTGGAGCATATTGGCGTGAAGGCATCGATCGATATGGAAGGGACCCTAATCTTCTAGTGCGAATGTGTAGTGCACATGAAATCCCCGGGGGATTCGCACCATGGTTTTTCTATATTATGGGTAAATTTTATTTTTTAGGTTGTTGTAGTAAGCTGCTTTTAGAGCTATGGAGTGGATAATTTGATTGATTCCGTCATATCAAGAGTGAAATATGATTATTGCAATCATTTTTCGCT # Right flank : TTAAAAGAGGAGGATAGTAAAATGAAAGCGATGCTAGACAAGTATAAAGGATGCCTAGTCGGGCTGGCTGCAGGAGACGCGTTAGGGACTACGGTGGAATTCCGTTCCCCGGGAACTTTCGTTCCGGTAACGGATATGGTGGGAGGCGGCGTATTTCATCTGCAGCCCGGTCAGTGGACGGACGATACTTCGATGGCGCTCTGTTTGGCAGAGAGTTTGCTCGCTATGAAGGGATTTGATCCCGTGGATCAGATGAGAAGATACAAAGAATGGATGCGGGAAGGGTATATGAGCAGCACGGGAGAATGCTTTGATGTAGGCAACGCGACACGTGAAGCCATCCTGCGGCATGAAAGTACGGGGGAAGGCTACTGTGGATCCGATAATCCCATCGCTGCTGGCAACGGATCTATTATGAGACTGGCCCCAATCCCGATGTATTATGCAGAGCAGCCGAGGTTGGCAATGCTCTATGCTGAAGCAAGCTCCAGGACGACCCA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 258241-257614 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMZW01000001.1 Paenibacillus dendritiformis strain F-A1 NODE_1_length_1595679_cov_160.089939, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 258240 32 100.0 34 ................................ TTCAAGTAGTGAGGTGCTAATGATGGCTACAAAA 258174 32 100.0 34 ................................ TTGTGCTGTTAATTGACTCATTGCCGATCACCTC 258108 32 100.0 35 ................................ AGTTTATTGGAGCTTTGTTTCTCGGATTTTTTAGG 258041 32 100.0 32 ................................ GCATCCGGCTGGCATCTACTCGCGATTCCGCG 257977 32 100.0 33 ................................ GTTCCTTTAGCTCCGCATCCACAGACGGGCTTA 257912 32 100.0 34 ................................ GTAGTAGACATTGACATGATTGGGCAGCGTGTTC 257846 32 100.0 35 ................................ CGGAACGAGGGTCCGTATCTGTCCTCGCATCTCAT 257779 32 100.0 36 ................................ TGTGGTAAAATGGTATTAACAAGTATATCGGAGGTG 257711 32 100.0 34 ................................ CTTTTCGCCGTGGAGCTGGTTCTGGGCGGGACTG 257645 32 90.6 0 ..............A.....C..........C | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.1 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AACAGGAAGCGATGACGTATCGTGGCGGTGATGTACCGTATTGTGTTCCTCGGTTTCCGTCCCCATACATGCCTCTCCTTCCTACCATCTTTTCCTTTATTATACCTGATTATAAGCGGTGGGGAATAGTGTGGGAATCTAGTCGAGTCTATGGTGTTATATCCATTCCACGGGTTTCTGATTCTTCTTTTGACGAGGGAGATCTAACTCTGTGCTTGTCCAGAATAGTCTGAAATTATCCATCATTTAAATCCCTCTGTGGTATACTGAAAAAAGGAGTTTAGAACTCGTTTGAAATGGAGTAAAAATAAATGAAAAATTGGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACCAGAATTATTGCAATGTTATCCAATTCAGTTTGTGAAAGTTAATTAGTTAAAGCTATTTCGAGCGAAATCTCTCATTTGCTTCGATATTTTAGAAAAAACTGATTTCATTGTTGTATTTTATGTTATTTTTCGCT # Right flank : GAAACCGGCCTTCGGCCTTGCGGCAAAGTCGAAAACGTTTCCGATGCGCCACAAAAGCAAATTTTCTATGACAAACCCAATTGTGATGAGGCTGTCCCATAGGCAGTGCGCAAGGATGCGGGGCAAGACGGGATTACAGATAATAGAGTGGCAGGAAGACGGCGGACGGAAAAGCGGCGGAATATGGACGGGTTAAGACGAGGTTGTGAGACAGAGCTGGAGAAATGAATTCCTGCATGAATGCAGGAATTTGCGCTATTTGTGCCCGTATTTGATTAAATTGCTGTAAAAGTGCATTATTTTCGCGGATTTTTGCTTTCTATCTATGACATAGCCTGAAATTCCTGCAGTTTTGCAGGAATCCCTCTAACGGGCGACACCTCATAATGGAAACCTGTATTTTTGCATTATTTCGGCAAGCCGAGCTTGGAGAATGAGGGGTTGTCTCATCACTGCAGCGAAACACTGCTGATGGGACAGCCCCAATTTTTTGTTTCAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 537353-536927 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMZW01000001.1 Paenibacillus dendritiformis strain F-A1 NODE_1_length_1595679_cov_160.089939, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 537352 32 100.0 34 ................................ TTTATTCTTCATACAATCACCTTCCTTACTATCC 537286 32 100.0 33 ................................ AACACTGCTTGAGATTACCACCAGTTCGTTCAG 537221 32 100.0 35 ................................ GGTCTGCCGACCCCTTGTCCTATACCTGACGCCCA 537154 32 96.9 35 ....T........................... GGGAGCTGGGTCAGCGCCTGCACTCCGCGCTGCTG 537087 32 100.0 33 ................................ AAACAAGAAAAGAACGGGAACCTGGAGCGCTAC 537022 32 100.0 33 ................................ CTTAAGGAGCCCCCCGAAGGCGAAGAGGCGGCG 536957 31 96.9 0 ...................-............ | ========== ====== ====== ====== ================================ =================================== ================== 7 32 99.1 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GTACCTCTTAGCTGGCAGCCGTGCTGAGTCGATTGGCGACCCCACGGGCCGATAACTCATCAGAGCCAGCGGCAATGATATTATAAGCCCCGTGTCGCTGGCCCCGGCCCAACAATTGGGGCTTGCCCTCGTGTCAACGACACGCCTCAGGGGGAAGAACGCCCTGCGAACGGAACGGCCGATACCTTATCCCCCTGGCCCGTGATATACTGAATGAGAGAACAAGTTGAGGGATTCAACAGAACGAGGGGAACACTGAGCCCAATCGCCCAGACGAGGAGAGCGGAGTTATACAAATTGGTTAGTACGAACAACTTCTGGTGCGAATGTGAAGCGCACATGAAATCCCTGGGGGATTCGCACCATGATTATTACAAAATTATCCAAATACACTAAAGAAGAGTTATAGATTTAATGTGATTTTTTATTATTCTATTCATTTTCTGGATTTATTCAATCATACTTGAATTGATATTTGACACATTCAGTAAATTTTCGCT # Right flank : ATACGCACAGGAAACGGTAAGCGGCTGTTTTTATTCAACCGTCATCACACTCAAAGGTTTTGGGAACAAAAAAGAGCCGTTTCAAATGAAACGGCCCATAATATAAATCAATGGGATTGTTCCCTTAACTTTGCGATAATATCTACTGGGAAGCCTGTTACCCTCGCAATCAATTCAGGATCCAGATCTTCGGCAATCATTTGCTTGACAACTTCTTCTTTGGCTTCACGCTTTCCTTCTCTTCTGCCTTCGCGTCTGCCCTCACGCTTAATGGCATCCAAGGTTTTTTCAAGCCCCATAACCGATACGCCTCCTTTTACGTTCTGGATAAGCTCGCGCAAATGCGGTATATTTTCCGGCAATTTCTGACTTAATATATTCGCCATCCAGGCGACCAATTGCTGCTGGCTTTCCTCTGGCAATTGCTGTATGGTATGCATCAGCTTGCCGAGCCGATTCAGTAATTCCGTCTGATCCGCCGTCTGATCAAGCAAAAACAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 25733-24964 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMZW01000007.1 Paenibacillus dendritiformis strain F-A1 NODE_7_length_316512_cov_171.353623, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 25732 32 100.0 33 ................................ TACTATGACATGTACGATATTCAGGCGGAGAAA 25667 32 100.0 37 ................................ TCCTCAGCCGATTCCACAAAGGCTTGTACCGTTCCTC 25598 32 100.0 37 ................................ ATATGTAATCCTCCTTTTACGAATTGGAGGTGGCCAC 25529 32 100.0 36 ................................ CGGTACCCTGTGATCCACACGTCCGCATAAGTCCAG 25461 32 100.0 34 ................................ CGAAATGCAGCTACTAAAGCCACGATGCTAATGA 25395 32 100.0 36 ................................ TTGATTCGATGCGGAATTGACGCCAGAGACGGAGGG 25327 32 100.0 34 ................................ CCTAGAGTTGCCAATTCCATAGCCCTTTTTGTCC 25261 32 100.0 34 ................................ TATCATCTGCTTGGACGAAGCTCATACAGATTTG 25195 32 100.0 35 ................................ CTCTTGCTCCAGAAGGCTTCGCTCCAACACGTCAC 25128 32 100.0 35 ................................ AATCATATGCAGATCCCATGAATGCTGAACTTCTT 25061 32 100.0 34 ................................ TTGGGCTTTCCGGCAGGGGCCGGGATATCACCCT 24995 32 93.8 0 .............................TC. | ========== ====== ====== ====== ================================ ===================================== ================== 12 32 99.5 35 GTCGCATCCTATGCGGATGCGTGGATTGAAAT # Left flank : CCAGTTGTCGCATAATGCTGCGGGCCATTTGTCGCAGCCTATGTGGATGCGTGGATTGAAATCCAAGAATCATTGAAAGTGAAGGCGGAATCACTCAAGTCGCATCCTATGTGGATGCGTGGATTGAAAATCGCTCAACCGCGCAACCACACCATGTTCGTCCCGTGTCATATCCTTATGATCCCTTGCTCTCTTCTTGAGTCAGTCAGGCCGATTCGTTGGATACTCTGTTTGCCTGTGATATATTGGGCAAAGGAAGGGTAAATCAGCCAACTAGAGTGAAGAGGGGATGCCCAAACACGAAATAAGAACGGCAGTGCATTAACGACAGGTGCGAATGTGAAGTGCACATGAAATCCCGGGGAGATTCGCACCAATTTTATTGAAATGTTATCCAATAAAGTTAATTTATTTTGATTGTTGAATCTAAATTGATTTGTTTTCTTGAAGTTTTTAACCATCAAACGGATTTTTTGGTATGTTTTGTGTTATTTTTCGCT # Right flank : TTAAACGCTGGCGGAGCAGGGGGGAAATGTCACGTCCTAAGTGAATCCTTGCTAAACTGACTTGACGACTGTTCTGTTTACTTGCTCTAATCGCTTGGTACAAAATTGGTTGTTGGAGATGATAGGTGTTTGAAGGGATGAAGCGGTCATTGGGGTTCTATTGCGAGAGCCGCCCCAATAATCTTTCTAGTCCTCCTGCTTTTGTGATAGCTTTATTTAATTCAAGCAATGGTTTCCTTATCCGTACCTATAAGGAATATTTCTTATATCGCGTTGAATACCCTGTGCCCCTACCCATCCCCAGCGGGATGGGTTCGCTTCGCTATGGAACGACGACTTATCCGCAGCTATTTCCCAACCTTGAATTAGTTGATTTTTCGCATTTCTTGGATGTTTCCCTCCTCTCCCTCCATTGTGTGCGGAACTTGTCGATTCTCATCGTTTCACGTTATCGGTTCCTTCTCTTCCGACTATTTTTTAAGGCTTATGAACCTTGCTCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 27023-26103 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMZW01000007.1 Paenibacillus dendritiformis strain F-A1 NODE_7_length_316512_cov_171.353623, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================================== ================== 27022 32 100.0 35 ................................ TGCTTTTAATCGGTCATTAGCGAGGCCTGTAGCTA 26955 32 100.0 33 ................................ AGAGGCATCGGAACAGTTACAAAGGGAGCCGTT 26890 32 100.0 33 ................................ GACCGTTAGACGAAATGATGTTTCTCCTCGCTG 26825 32 100.0 36 ................................ TATAAGCTCGCCCTCTCGCTGAACGTGCAGGTCATA 26757 32 100.0 34 ................................ TGTCAGATCCCAACCGTCTTTGAGTGCATACGCG 26691 32 100.0 34 ................................ TGCGGATGCTCTGCAATTGGCCGTCGAAAATGTC 26625 32 100.0 34 ................................ GACAATGACAACGAAAGAATCACGAACATCACCT 26559 32 100.0 36 ................................ GTAATCTATCTGCGCAAGAAAATCGGCCAGGACAAC 26491 32 100.0 35 ................................ CGTTAAGTAGGCTACTCGCGAACCCGGCATCGGTT 26424 32 100.0 33 ................................ AACGGAACTAGGTTAACATCTAATCAGTACATG 26359 32 100.0 34 ................................ CGCGAGGCAATGCGGATTGGCGAAAAAGATCGTC 26293 32 100.0 59 ................................ CTCTACGCGGCGCCACGTTTCCTTTTCATCCAGTTGTCGCATAATGCTGCGGGCCATTT 26202 32 96.9 36 ......G......................... CCAAGAATCATTGAAAGTGAAGGCGGAATCACTCAA 26134 32 96.9 0 ...............................A | ========== ====== ====== ====== ================================ =========================================================== ================== 14 32 99.6 36 GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Left flank : CAACATTTTTGCTTCCATGCTTTAACGTAGGGTCGCATTAGTGCCGGATAATTTTATGAAGGCTTTTCCTAACCATAGCAGGCATACGCCAGGATATCCGACCGAATGCACTCTTTCTCTTTATTGATATGAGATACTGCATGTTCTAACTGTCTGAAAAGTTACCCATCACGACGAGCGGCTGATCTGCTGCCTGATCGATTCTATCGGGAAATGCGTATAGCCAGGCTGCACAAAAGTATCATCTTCTTAGCACACTTGTCCGTGATATACTAAGAAGTATGGTGGCGAAGATGCCAAAGTTGGCCGAGACATTCGCACGGCCACTTGGTGCGAATGTGAAGTGCACATGAAATCCCCGGGAGATTCGCACCAATTTTATTGAAATGTTATCCAATAAAGTTAATTTATTTTGGTTTGTTGAAGCTAAATTGATTTGTTTTCTTAAAGTTTTTAACCAAGAAAACGATTGTTTGGTATGTTTTGTGCTATTTTTCGCT # Right flank : TCGCTCAACCGCGCAACCACACCATGTTCGTCCCGTGTCATATCCTTATGATCCCTTGCTCTCTTCTTGAGTCAGTCAGGCCGATTCGTTGGATACTCTGTTTGCCTGTGATATATTGGGCAAAGGAAGGGTAAATCAGCCAACTAGAGTGAAGAGGGGATGCCCAAACACGAAATAAGAACGGCAGTGCATTAACGACAGGTGCGAATGTGAAGTGCACATGAAATCCCGGGGAGATTCGCACCAATTTTATTGAAATGTTATCCAATAAAGTTAATTTATTTTGATTGTTGAATCTAAATTGATTTGTTTTCTTGAAGTTTTTAACCATCAAACGGATTTTTTGGTATGTTTTGTGTTATTTTTCGCTGTCGCATCCTATGCGGATGCGTGGATTGAAATTACTATGACATGTACGATATTCAGGCGGAGAAAGTCGCATCCTATGCGGATGCGTGGATTGAAATTCCTCAGCCGATTCCACAAAGGCTTGTACCGTT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGTGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //