Array 1 64748-63943 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHX01000007.1 Salmonella enterica subsp. enterica serovar Albert strain BCW_2077 NODE_7_length_171188_cov_3.48973, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 64747 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 64686 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 64625 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64564 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64503 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64441 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64338 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64277 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64216 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64155 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64094 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64033 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63972 29 96.6 0 A............................ | A [63945] ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82861-80880 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXHX01000007.1 Salmonella enterica subsp. enterica serovar Albert strain BCW_2077 NODE_7_length_171188_cov_3.48973, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 82860 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 82799 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 82738 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 82677 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 82616 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 82555 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 82494 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 82433 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82372 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 82311 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 82250 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82189 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82128 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82067 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82006 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 81945 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 81884 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 81823 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81762 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 81701 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 81640 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 81579 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 81518 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 81457 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 81395 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 81334 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81273 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81212 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81151 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81090 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81029 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 80968 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 80907 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //