Array 1 38559-40323 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGQ01000004.1 Lactobacillus helveticus strain IMAU30046 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 38559 32 100.0 34 ................................ ATCGAAGGTGAGGTCGGTGACTACACTATTGATG 38625 32 100.0 35 ................................ TGCTTTAGAGTTACCTCAATATAGCAAATTTAAAG 38692 32 100.0 36 ................................ GCTAACATAAAACTTACGAGCACCAATCATATTCAT 38760 32 100.0 34 ................................ ACAATACTACAGATCAAGATGTTGAAGACAAGAT 38826 32 100.0 34 ................................ AATTAAGTCTAATCATAGGGGCAATAATTGCTTA 38892 32 100.0 35 ................................ TTTTTCGTCTTCTGCTCCTAGTGACTTAGTGAGCC 38959 32 100.0 34 ................................ TTAGAATACTTATGATCCTTAGATAGATGAACCG 39025 32 100.0 35 ................................ CTCTGATCTGCTCAGCACGTTGCTCTTGCTTTGAA 39092 32 100.0 35 ................................ GATTATTCGGAACAACAGATGATCCTAAATGCTCA 39159 32 100.0 35 ................................ TTTTTCAATATCCTCTGCTGCACACTTAGTACAGA 39226 32 100.0 35 ................................ ACTAAGGGCTGGCAAGCAAAGAAGCCACCAAAGAG 39293 32 100.0 34 ................................ GTTCCAATAAAGAGCCTGTGAGCGGATTTCTCAC 39359 32 100.0 34 ................................ TACAAACACTTGCCAACTTATAATCCACAAATGC 39425 32 100.0 35 ................................ AATGCAAAAGTAGCTGAAAACGTTGAACTGATTAA 39492 32 100.0 34 ................................ AAAGGTGTGTGGATACCTGCTGAATATTGGTTAG 39558 32 100.0 35 ................................ AGCATCAACGGCTCTAATTATGTCATTGCCGGTTT 39625 32 100.0 35 ................................ TCCAAAAAATCACGGTACAAATGATGAAACTGCTT 39692 32 100.0 34 ................................ ACCTGATCAAACGTTAGGCAATAGATTAACCGAA 39758 32 100.0 35 ................................ TCTGTCAAAAAAAGTAGAAAACTACAAAGAGCTTG 39825 32 100.0 36 ................................ GGCTTTAGATGCGTCAAATGCCGCCTGTGGGCTATC 39893 32 100.0 35 ................................ ATATACTTGAGAGCCCCACCTTGAGTTTTGCCAAA 39960 32 100.0 35 ................................ AATATCTTTTGGCGTTTTATGTGTATAGTCCAAAA 40027 32 100.0 34 ................................ AGTTTTGGGCTTGTACGGTGGTGAACTTGAATTT 40093 32 100.0 34 ................................ AGAAGATGGATACAATTTTTAGAAATTCCAGTCT 40159 32 100.0 35 ................................ ACACCATATGTGGTCAACGCTTTAATTGGATTACG 40226 32 100.0 34 ................................ TTTTGAATAGATGGCATGTAAGTCTGATATAGTT 40292 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ ==================================== ================== 27 32 99.9 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAGATCTTGACGAATACCCACCGTTTATGTGGAAGTAGGTATGCAGCATGATGGTAGTAGTTAGTTACGATATTAATACGGAAAGTAAATCTGGTCAGCGAAGGTTACGTCATGTAGCCAAAATATGCTTAGATTATGGACAACGAGTTCAAAATTCCGTTTTTGAATGTAAAGTTAATTCGATGCAATTAGAGTTGATGAAAGAAAGACTACTAGACGAAATCGATGATAGCCAAGATAGTTTGTATTTTTTTAATTTAGGGAAGAATTATAAAAATAGAATTAAGTCATATGGAATTAAAGAGGTTATAAATTTAGAATCGCCTGTAATATTTTGATATCGGTGCGAACTGTATGTGAACATGCTTTTAGTGAAGATTCGCACCAATTTTAAACAGGTGAAAAGTGATCTTTTGATAAAAAATATATTTTTATCAGGGTAAGTTAATTTGAAGCCCAATATTTAGAAATGAATTGAAATCATGATCTAAATATTGCG # Right flank : TTTTAGGTCCATTGCACTCTTGCCAGTGAAGTCGTGTCGCACTCCTTGTGATGCACTTGTGGGTGTATTAGTCGGCTTCTTCAACCCAGGCTTGAAGTACTAATTATTAAGAGGAGATTATTCAGATGACAATCGAAGAGATGCAAAAAGGCTATCAAAATGAAGTTGCTTATCAAAAACATATGCTTCGCAATCTAGGCTATTGATTCCAACTCTTTTTAACAGTTAGTGCGATTGGTTTGGTTTTAATTTACTATTTCCATCAATCAACTATGTGGCTCTTTATAATCGGAATTATTCTGATGGTCGCCGGTGTTTTAGGAATGTTTGCTTTTGGCTATGCTTCTTGGCGCGGACGGCAGAATGTCACTCTGGTAATCGAAGACTATGAGAAAAAGATTGCAGAAATTAAAAAGTTAGATCAAAATGCTTCCGGAACGGAAAAGATCCGTTTCAAATGATTCTTATATGAATAAAACAATTTCCCCTTCTCTAGAAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6955-7105 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCGQ01000061.1 Lactobacillus helveticus strain IMAU30046 Scaffold61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6955 29 100.0 32 ............................. AACTCCGGAGCCAGAACTTCTAACCCAACTAC 7016 29 100.0 32 ............................. TGCTCTAAATTATCGTGATATTCTTGAACATC 7077 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GCTAGTTAAGTAGTGATATCCCTTTTTAGCATGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGCGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : TCAGGTGTATAAGGCATTTAAGTATCTATAGTCTAATTATTTTAGAGCATAAAAAAAGACCCGCCAAAAAATAGCGAGTCCGTGTAAGGAGAATAAGAATGAAGGAGAGGTAAATCAGCCCTCGTTTCTTAGTTTATATTAGGAGTGTTAAAATGGCAAGAACTGAACCAGAAAAAAAAGCTCAAAAAAAATATTATTTGAAAAACAAAAATATGTACAAGATTAACTCCTATCGCTCAAGAGCTAAGAATTTCATTTTAAAGTATGCAACCACTGATGAGCTCATATGGCTTAGAGGCTTGATTGATGAAAGATTATCTAAAAAAAAAATTTGAAGTAGCAATAACTGATTGAGTTTGTTGGTATTCTCCACGTATGTGGAGGTGATCCTTAAGAGGGCGTCAGGTCAGTTTATACGGTCAAGTATTCTCCACGTATGTGGAGCAACCAAAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //