Array 1 287260-286075 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWT010000002.1 Streptomyces cavourensis strain A54 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 287259 29 100.0 32 ............................. GACCGATGATCAAGCGACTTCGCGCTGCCCTC 287198 29 100.0 32 ............................. GCGATCCCCTGGCGGGACCGGGTCCGCGGGGA 287137 29 96.6 32 ............................T CCCGAGGGTTGTTGCGTTGTTGACGAGCGAGA 287076 29 100.0 32 ............................. TGTCGTGCTGCTCCGGGGTGGTGCGGGTGACC 287015 29 100.0 32 ............................. GCCCAGCTCCGCGGCGATCTGGACGTGGGTCA 286954 29 100.0 32 ............................. GAAGGGCCGACGCCTCACTCCGAGGCTGTCGG 286893 29 100.0 32 ............................. GGGTCCTGCTCCTGGTTCACACCGTCACGGAG 286832 29 96.6 32 ..................A.......... ATCGCCGCACTGTAAGCCGCCGCTCTGACATT 286771 29 93.1 32 ..................A.......T.. CGCTGCCCTTCGCCACTGCGCTGTCCCGGATG 286710 29 100.0 32 ............................. CATTGGGGTGCCTGGGCGCTCAACTCAGAGGC 286649 29 100.0 32 ............................. TTGGCGACCGCGACCTTCGAGGACCGCTCCAG 286588 29 100.0 32 ............................. CTGGTCGACGCCGACCCGAACGACCCCGGCAA 286527 29 100.0 32 ............................. GGCACCGACCCGGCCCGCGCGCCGGAGCTGCC 286466 29 100.0 32 ............................. GTACCGCGCGGTCGCTAACGGCGGAGAGGCCG 286405 29 100.0 32 ............................. TGGAGGTACGCGGCCCCCATCCTCGGCCTGAT 286344 29 100.0 32 ............................. TCGGCCTGCGTCAGCCTGCCATGCTGCGCCCA 286283 29 96.6 32 .........................C... GAGGATAGACCCCCTGTGACCAGGGGGTTTTT 286222 28 93.1 32 ..C..................-....... CCTGTCAGCACGGCACTCCCCCTGACCGTGCC 286162 27 86.2 32 ..A........--........G....... CAGGTGAGCCGTGGGATTCGTGGAACGGTCTG 286103 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.1 32 GTGGTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GTGGACTACCTGACCACCGCGCTCACGGCAGGCCTCCCGGCCGAGATCAACTCCCCGGTGGGCTTCCTCCGCCGCCGCCTGACCACCAAGCTCCCACCCCACCTGCCCCCGGCGACCACCACTCGCCCCACCCCGGCCGCTCCCGCCGCCCGCGTCCTGGTGGAATGCACGGAGTGCGGCACCCCGGGCCCCTCCGAGGCCCTTCCTGACGGCCTCTGCCGCCCCTGCGCCACCAGCCCTGCAACTCCGCCACCCGCCCTGCCCGCACCACCCGACATCAAGACCCACATGGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGAACCCGACGGCGCCCTATTCAGGGGAACAGGCATCGGCCTTGGCGACCGAGGGGCAGAATCACTTACGGCAGGCGACCGGTCCGCCAACGGCGATCAGAACGGCGGGGGATATGTCCGTTTCTCAAGAAGTAAGTAAAAACAGCATCCCGGCCAAATAAACCCGCAGGTCACGAACT # Right flank : TCGCTGGCCGGTGAGCGTACGGCGGCCACCTGGTGGTGCCCGCACACGGGGCCCCACCCGATCCGGCTCTCCGCCACTGCCTGCCTCCGCCGGATTCGCGGTGGCCGGGCCTTCACCGTCGGCCTCTCGACGGTGAAGGCCCGGCAAGTGGGTACGGTTGAACGGCAGTCGGCCGGCCAGGCCGGCCGGCCCGAAAGGTGAGCGAGCTAGAGGAACCGCCCCGTTCGCGGTGCTCGTCGTCGCCTTCGTCCAGTGCCCGTGCCGGTCACGCCTTCGTGAGATATTCCAAGAGACGGAAGTTGGCGTTGCTGCCGTTGCTGACGAACTCCAGGACACCCAGCTCGGTGCGGATGAGACCGGCCTCCTCCTCCAACTCGGCCAGCTTGTCCCAGTCGCCGGAGTCGTTGAAGCCGAGGAAGAGCCGACCGCCGTCGGTCAGATGCCGGGGGCCGTCCACGAGGAAGGAGCGGTGGGAGACGTAGCCGGCGTCCATGATGGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 289128-288854 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWT010000002.1 Streptomyces cavourensis strain A54 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 289127 30 96.7 31 .............................T GGGGGTCAGGCTCCTCGGGAAACATGCCGGT 289066 30 100.0 31 .............................. GTCCGGCACAGCCACCGTGGACGAGGACGAA 289005 30 90.0 32 .........................GT..C CCGGCGCCGCTGGCCATCGTCACCGAGGCGAG 288943 30 93.3 31 ...G...........A.............. GGACGCTGCTGGTCTACGACGAGATGCTGAC 288882 29 83.3 0 ...G..................CA-....C | ========== ====== ====== ====== ============================== ================================ ================== 5 30 92.7 32 GTGATCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGCTGCCAGAGGAGGAAATCGCCATCAAACTTGCCGCATTGCCCGGCTGGGCACGAGAAGGGGACGCGATCACCCGCACGTTTGGGATCCGCTACCACGGCGGCGTCGCGATGATCGTGAACGTCGCGGACGTCGAACGGCTCATCGGCCACCACGCGGACATCGACCTGCGCTGGGACCACGTGAGGTTCCGCATCACGACACACGACGCCGGACACCGCCTCACCACCGCCGACTTCGACCTGGCCGCCCGGATCGACCGCATCGCGACGGCACACGAAGCGCAACCGCACAACTCTTGATCACGGCACCCGCGTTGTACCCGCAATGTTCGGTGAACGGCCTTTCGGCGGTGAAGATGAGGCACTCTGGGCGTGCGGCCGGGAGAAGCCCCGTCCGCCGCATTCAGCCTCGGGACATATACAGAAAGGGGATATGTCCGTTTCTCTGGAAGCAAGTAAAAACACCCCTCAGCCACCTAAACCCGCAGGTCACGAACT # Right flank : GCCTTGACCGTCTCTCGGGTCTCAAGCTTCGGGTTTCGAGGACGGTTCGTTCACTCTTTCTCGTGTACGGGTACGGGGCCCGGCCCGAAGCTTGGGCTCCGAGACCCGGGCGTCGGGACACGAGGCCCGGGATTCGAGCGCCTTCTTTAACCGGCAGGTAAGAGAAGGGGTTTGGGAAGACCTTCCGACCTCCCCACCCAGGTCACAGCTGGGGAAGTATGACTAATGGTGACGGCTTGCGGCGGGGTGTCACGAGTGCTTACGGTTCGAGAACTAAGCGACCCCGACAGGTGTTGGAAGCACCAGGCCGGGGTCTAACCGCAAGATCGCTAACGATGAAGGACGATCCCGTGGCTACCCAGCACATTAGCTCTGCCCTGCAACCCCCTGCACTCTCCGACGCGTACCTCATGGCGAATCCGGGCTACGGAAAGCGCTCAGCTCCGGACCAACTGCCCCGCAGCGCAAGGGATTTCGCCTTACTACCGGCGCGTGAGCGG # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 298482-298331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWT010000002.1 Streptomyces cavourensis strain A54 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 298481 29 100.0 32 ............................. CCGTCGTCGGCCCCCTCGAAGATCTGGGTGGC 298420 29 100.0 32 ............................. ATGCTGCGGACGTACCGGGCCACCCTGTTCGG 298359 29 82.8 0 .....................A.AGC..A | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Left flank : CACCCCGAGCCTTTCCTCGACCACTACCAACTCCTGCTCCCCAGCGGGTGCTTCACCGAGCCACTGCTCCAGCCGCCCTTCCTCCTCCAGCAGATCCCACTGGTCCTCGTCCAGCAGGTCGGCCAGTTCCCGGTCGGAAGCCTCCTCTTTCATGTACCGCTCGTCGTACTGCTCCAGAAAGCGACGCCACTCCTCGGGCGTGGTCAGGACGTCAGTAACTTCACTGTCTTCAGGCTTGGTTGTCTCATCCATGCGACTCATGCTCGCAGGCGCCTATGACAACGCCCCTACCTCCAGGGCGGCGGACCGGAGGCAGGAGCCGCACCGACTGGGCGTGGCTGGCGCTCCTGTGCCACGCGCAGCACCGAGGAAGGGCAGAATCACTCCTGGGGTATTCGGCTCAAGCAGGGGCCCTTTCCCGAGACCGGAGGGATATGTCCGTTTCTCAAGAAGTAAGCCAAAACAGCCCCTCAGCCACATAAACCCGCAGGCCACGAACT # Right flank : GAAGCTCACAAGGCCCACAGGACCCGCCGTACCAGAATGAAGCCATCGGGCGTCGGCTGACGGCCTGCCATGCCTCCGTGCCGCCCACGACCCGAGCACCGAGCACCGAGCACCGAGCACCGAGCACCGAGCACACGTAACGCCGTCCTCCTCCGACTCGTTGTCGCGAGAGGCGAGAGACATGGGTGGTCGACGCCCGCGGAGCCCAGGAGGCTTGGGAATCATGATCGAAGAGGGCGGCCCCGGGGGATGCCCGGCATCGCGGGAGGAGCCACGCGTCGCGCACTCCCGTACGCTGCGGTTCTGGCTCGATCCGGCGAATATCGCGGTGCGCCTCGGCCAAGCAGGCCCCGTCGCCCGGACGAAGGCCGGACCGGCGGTCGCCTTCCAGGTCAACGACCCGTCGCTGCTCAGAAAAGTCGGCTGCGGGGAGGACACCTTCCAGGCCTGGAGCGCGGACCCGTGCCTTCGGGACTTCACCGGGAACGGTTTCGCCGGAT # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 329560-328563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWT010000005.1 Streptomyces cavourensis strain A54 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 329559 29 100.0 32 ............................. TAGACGACCCGGCCGCTCGGGTCGTGGATCAC 329498 29 100.0 32 ............................. CGCAACGTCGAGGGCACCGATCCGGGCGAGTC 329437 29 100.0 32 ............................. ATGCGGGAGCCGTCGTGGGATGACGCGGAGGT 329376 29 100.0 32 ............................. AATCCCTTGGAGGCCCTGAAGGACATCACGAG 329315 29 100.0 32 ............................. CGCGATTTCATCGACCGGGCCCTTGAGCTGGG 329254 29 100.0 32 ............................. GCGTTCCCTTGGTCTCGCGCACTGGACGCGGT 329193 29 96.6 32 ...................A......... CCGCCAACTCCGGACGCAAGCCCCCGCCCACC 329132 29 100.0 32 ............................. ATCGCGAACCCCCGCTCAGACTTTCCGCTCAG 329071 29 100.0 32 ............................. GTCTCGGCGGACGCGTCGCAGCCGGGGCAGGA 329010 29 100.0 32 ............................. AACTCTCCGGTTTTGATGTGTGCGTAGGCATC 328949 29 100.0 32 ............................. CCCATCCCTGTACGCGCCACCATCCTCTCCGC 328888 29 100.0 32 ............................. ACGCTCCAGGTCCGCCCGCGCGGCCTGGGCAG 328827 29 100.0 32 ............................. GAGCCGACCGCGCCGTCCCTCCGCGAGGATCC 328766 29 100.0 29 ............................. GCGGCGGCCACGCTGTAGGCGGCGCTCGT 328708 29 96.6 32 ..................T.......... GAAACCCCCCATGACCGCTCTTCCCGGGCAGC 328647 29 89.7 29 ......................C.GC... CTGACCCGTGATGGTGCGCGGCGTGGGTG 328589 27 89.7 0 ............--..............A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.4 32 GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Left flank : CCAATTTGGGCGCCCAGGAGGAGGATTCCAGAAGCCAGTTCACCGATCGCCTGTGGTGAACCAGCATCCGGGGGCCCGCCGTACCGACCCGTCCTGTCTCCGGGCGCGGCGGGGAAATCGGGCGCTTCGGCGGAGGCGGGGTCTTCGGCGGGTGGTCCGGGGCGTGATCCGACACATTGGCTCCAGGGGCGGCGGGGCGCCCATCGTATGGCCGCTCATCACGGCTCTTGCCCCCGATGAGCCGCCCCTTCACCCGTACAGATGGGGCTCCCCGTACAACTTGACGCGATTTTGCGCCAGGTTTAGCAGGCAGGAGGGGACGCGGGGGACGTAGGCGCATACCTGCACAGCGCCTTGCGGTATGCCAACGCAAAGCGCTGCCCGTGCAGCAAGACGTTTGCCGTCGCTGACTGTTCCAGCTCTGTCACCATGTCAGGGTGAGGACGGCAGGCATGAGTCAAGAATTGGCAAAGCCCCTATAAACCAGCAGGTCAGGAAGA # Right flank : ACTTCGCCAATGCGCTTAAGGAGCGTTCTGTGCCAGCAGGGCTGTTCGATATCTCGGGTGGCACGGCGACTTCAGGGAGTCGTGCGTGCGGGACGATCGGGGCGTGTGGGCCCGTACTCTGCAGCTGCGCGTGGGATCGCCAGTAGAGACAAGGAGGGGTGCGGGGAGTGGAGAGTGGGGCACCGTGGTCGACGGCCTTGGTTCGACAACCGCTGTCGGCTCATGCCTTCGTGACGCGCGGGTGGCCTGCGGAGATGCCCGAGAGCAGACGAACGCCACCGGCGTTGTCGGAGACGCTGGCGGCGGTGACCAGCACGGCCAGGAGGAGGTGGAGTGTGTCGACGCCGATGTGACGTTCGCGTCCCGCGATCTTCTGCCCGCGTCCAGGCCCTTTCCTCTGCGTTCTGCTCGTCAGGCTGTCGGGGTGGGTTCGAGCAGTTCCCTACGGGCATCGGCCAGGTCACTCGGGTACGGCCACTGTCGGCGAGGCATGTTTTCGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 335876-334200 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWT010000005.1 Streptomyces cavourensis strain A54 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 335875 29 100.0 32 ............................. GCGGTCGACGGTGACGTACCGCGCGCGGCGGG 335814 29 100.0 32 ............................. TCGGTGAGGCCCGGTAGGTCCGGCCGGCGCGC 335753 29 100.0 32 ............................. CCCGCCGTCGCGTTCCCGCTCTGCCCTGGGGC 335692 29 100.0 32 ............................. CCCACCGGTGTCTCCGCCCGGGCCCAGGACGT 335631 29 100.0 32 ............................. GTCGTCACCGCTGCCTACGTGCGGGAGGACGA 335570 29 100.0 32 ............................. GCCACCGGCTCGGCGGTCACCGGCGCGGTGGG 335509 29 100.0 32 ............................. GATCGGGAAATGCTTGTGTGGGTCGATGAGGC 335448 29 100.0 32 ............................. GCCTCCGCCACCCCGACGCTGACCGACGAGCA 335387 29 100.0 32 ............................. AGTTGGGGCAGGACGCGGACGGTGGTGACCAG 335326 29 100.0 32 ............................. GTGTCGGTGCGAGAGGTGGTGGTCATGATGAT 335265 29 100.0 32 ............................. TACCGGCCGGGCTCGCCCTCCTGCTCGAATGG 335204 29 100.0 32 ............................. GGGCACCAGTCCCCGCTCGCCAAGCTCCCCTC 335143 29 100.0 32 ............................. TCGACGAGTAGATCGGCGGTACGGCGGCATTC 335082 29 100.0 32 ............................. CGCTGTCCGCGGTCGGCGGCTTCGGCGAAGCG 335021 29 100.0 32 ............................. AGCGGCCGGAGAGCACCCCCTCTTCCGCTGGA 334960 29 100.0 32 ............................. GTCTCGGCTCCTCCGACATGGCCGCCGTCCTC 334899 29 100.0 32 ............................. ATGAACCAGGCCCGCACGTTCGCCTCCCAGCT 334838 29 100.0 32 ............................. CAGCGCATGGGCTGCGGCACGACGAAGGCGTA 334777 29 100.0 32 ............................. GCGATGCGCCGCTCCCTCGACCACATCGAGCT 334716 29 93.1 32 .................A..........C TGCGGGGCTGGCCCACCGGCGACCCGACGCCC 334655 29 100.0 32 ............................. CCACCGAGGCCAACGCCGACAGCGAGAAGATG 334594 29 100.0 32 ............................. CAGCGCGCGACCGGGCACCCGCTGTACGCGCT 334533 29 100.0 32 ............................. AGCGCGGCCGATCCAGTTCTTCATGGTCCTCA 334472 29 100.0 32 ............................. GAACCGGCATGACGGTTACCCGTACCCACTTC 334411 29 100.0 32 ............................. CCGGAGTGGCCGTAGCCTTCCGGCAGGAGGTG 334350 29 100.0 32 ............................. CAGCCCTCGCAGATCCGGCGGGCCCCGTTGCG 334289 29 96.6 32 ........C.................... ACCGCAGGGGAGTCGAACCGCGGCACGCACAA 334228 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGGTCCCTGCGCGAGCGGGGGTGTTCCG # Left flank : CCGAAGGACGCCTTCGCCCGCGCCCTGCACATGGCGGACCTCTTCGCGGACTCGAAGCAGGACTTCCCGGGGGCCGCCAGGATCATCGACCGGGCGCTGAACCTGAAGGACGAACAGCCGACTCCGCTGCAACGGTTGCGGCTACTGGTGTTGCGTGGGGACCTCGCGCAACGGCTGGGGGACGCGGAGGGGGCACGGGGGTGGCTGGAGGCGGCGGAAACGGTTCAACTCACCGCCGGGGAGGAGGCCTTGGCCCGCGATGCGCTGGCTCGGCTGGAGGAGCTACGGGGGTGATGGAGCAACCGGTCGGCCTCTGAGGGCTGCCCCCTTCAGGCTGGGCGCAGGACGCCCCCTTACGACTCTCCGCCGAACCAGTCGCCATGTGGACGGCTCACGAACCAACTGCGTCCGGCCGCCCGCTCTGTGATCATGTAGAGGTGAGCACGCAGCTTAAGGGTCAAGGACTGGCAAAGCCCCTATAAACCAGCAGGTCAGGAAGT # Right flank : CTATACCAGAGGTCGGCCCGGCGCCGGGTTGGGCGGCATCTTCGGGGCGCCGGAGCCGTGGTTGCCCATCTCGATCCGCCGGGCGCTCAGCCCGTACACACCGAGCGGCGGGAAGAGGTCGACGCGACGCGGGCAGTTCCCCTCCGCGCACTCCTCGCAGAGCAGGTCCCGGCCGGTCGCCGTGCGCCGGGCCGCAGTGACCGGGGCGGTCCAACATGCCTCGCAGGCCCGAACGTCCGTCGCGGACAAAGTGACGGTCATCGGCGCCGCCCGGGCGCCCCGGGGAGGGGATGGGCACGCATGATGCTGCCTCCGTTCTCATGGATGGGTGGTGACCCGCCCGGCCGCGGTCCTTGCACGGGTTTGCGCGGCCGGGCGGGAGCCTGCAAGAGGCGGTCCCGGGCCCGCCGTGACCCGGGGGCGGGGTTCAGGAGTCCGCGTACGGACGGGGCGGGCCGCCCCGCCGGCGTTCCCTGTCCGTGCACGCCGCGCAGAGGAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCTGCGCGAGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGAGCGGGGGTGTTCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.00,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 97338-98402 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWT010000008.1 Streptomyces cavourensis strain A54 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 97338 29 100.0 32 ............................. CAAGCTGCCATGCAGGGGCGCAGCCTCCGTCA 97399 29 100.0 32 ............................. GGCGAGGAAGAACTCCAGGCCGAAGCCGACGG 97460 29 100.0 32 ............................. TTGATGGGCTCCTTGACCAGGTCTTTCAGCCC 97521 29 100.0 32 ............................. GGGCGTGGAGTGAGTTCGGTCATGCGGGCTTG 97582 29 100.0 32 ............................. GAGACGAAGGCCGACGAGCTCAAGCACCACAC 97643 29 100.0 32 ............................. CGGCGGCCGACGGTGATGCTGCGCCCGGAGTA 97704 29 100.0 32 ............................. CAGCCCGTCGCCCTGGCCCTCGACTACACCGC 97765 29 100.0 31 ............................. GGCACCCGCCCCCCCGGGGTCACCCCACCAA 97825 29 100.0 32 ............................. GAGAAGTCCGGCTTGTTGTGAACGGAGCCGAC 97886 29 100.0 32 ............................. ATGGTCAAGAAGCGTGGCTGGAACCTCTACAA 97947 29 100.0 32 ............................. CGCCCAGTAGAAGAATCTTGACGTCGCCGTGC 98008 29 100.0 32 ............................. CCGACGCTGCGTGGGGCCGTTTCGCCCCCGCC 98069 29 96.6 32 .........................C... TCCAGCAGCTCCGGGCCCTGTTCGCCCACCCA 98130 29 89.7 32 .............GT..........C... GGACACACCGGCACCGTGACCCTGTCGGCTGC 98191 29 89.7 32 .............GT..........C... TTCGACCACGTCGGCATCGTCGTGCCCGATCT 98252 29 89.7 32 ..............T..A.......C... CGCAGCCCGTTCGGTACGAGGGAGAGCAGCCA 98313 29 93.1 32 .....................G...T... GACCTCTGGGAGGACAACCTGTGTCGGTGGCC 98374 29 79.3 0 A...........A...........CCAT. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 96.6 32 GTGGTCCCCGCGCACGCGGGGATGGACCC # Left flank : CACCGCCCTCACCGCAGGCCTCCCCGCCGAGATCAACTCCCCCATCGGCTTCCTCCGCCGCCGCCTGACCACCAAGCTCCCACCCCACCTGCCCCCGGCGACCACCACCCGCCCCAGCCCCGCCGCTCCCTCCGGCCGCGTCCTGGTGGAATGCGCGGAGTGCGGCACCCCGGGCCCCTCCGAGGCCCTTCCCGACGGTCTCTGCCGCCCCTGCCGCGAAACCTGTGCCACCGGGCCCGGCGACCCGTCACCCGCCCTGCCCGCACCACCGGACATCAAGACCCACATGGCCAACCTCCGCAACCTCCTCAAGCCCGTCTGAACCGGACGGCCGCCGATTCAGGGGAATGGGGGTCGGTCCTGGTGACCGAGGGGCAGAATCGCCTCTGGCAGGGCGAGCAGCCGACCCAACGGCGATCAGCACGGTGGGGGATATGTCCGTTTCTCAAGAAGTGAGTAAAAACAGCACCCTGACCGGATAGACCCGCAGGTCACGAACT # Right flank : CTCAACGAAGCTGGGCTCCTGCCGGTCGCGGCCCTCGGCGGATGGCGGCCGTTGGACAGTGTCCGGCCGATCACGACGGCCCGCGGAGAGTCGGGCCGCACTTGCCTGACCACCAGCCGTCACGGCACGGATACGGCGCCCGTATCATCCCGCCATGATCATGCTATCTGTCGACCCCGCCTCGCGGAGCTACGCCGATGGCCAGGCGGTGGGGCAGCTTCTGGTTCTCGCCGTGGCTCTGGTCCTTGTCTGGGTCGTCACCCGGACCTGGCGGCGAGGTCCGGCCCCGGACGGTCCGGACGACGTGGAGAGAACCACCGCCATCGCCGTACGGCGTGGCAACATCGTCCGCGGAGTACTGCTGGCCATAGCCGCCGCCGGGCTGATAGGGATCTTCACCGGCAGGGGATACCAACCTGCCGCAGAGGCGGCCCCCACCGCCCAAAAGCCTGTCGCCCAGTCGCCCTCCGCCACGACGGGGCCTGCGGAGATCAAGCGCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGACCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43263-44634 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHWT010000015.1 Streptomyces cavourensis strain A54 contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43263 29 96.6 32 ..C.......................... GTGATGGCTGGCGCCGGGCAGTCGGCGGACGA 43324 29 96.6 32 ..C.......................... TATGACCTCAAGGCCGGTGACCCGGGCACGGT 43385 29 96.6 32 ..C.......................... ACAGATCGACTACAAGCAAGACTTGTAGTCGA 43446 29 93.1 32 ..C.........................G TCGTCACCCCGTGCTGGAGCGCCGCCAGGGTG 43507 29 96.6 33 ..C.......................... CGGCGCACAGCCACCGTGAGCGGCGACTTCGTC 43569 29 96.6 32 ..C.......................... CCGGACCGGGACACCGTCGATGACGTGCGGGT 43630 29 100.0 32 ............................. CAGCCGCTACCCCTGGATGCTCTGCGGCGGCG 43691 29 100.0 32 ............................. TCCTGCGCCGCGTTCCACGCCTGCGCCCGCTT 43752 29 100.0 32 ............................. CGCGGGCTACTCCGGACTCCCTCGCTCGCCAA 43813 29 100.0 33 ............................. AAATGCAGGCGACGGTTCGCTACCACATCGGCA 43875 29 100.0 32 ............................. CGCGGCCATGGCCGGACGTATCCGGGTCACGA 43936 29 100.0 32 ............................. GGTAGACGGCCGTCTCGGTGAGACCGCCCTCC 43997 29 100.0 32 ............................. GCCCACCGGTCCTCCACCCCCGCCGACGGCAG 44058 29 100.0 32 ............................. TACGCCTCTTCCAACTGCTCCCCCGCATCGTC 44119 29 100.0 32 ............................. TCTCCAGGGCGGTGTAGGCGCAGCAGTCGTCA 44180 29 100.0 32 ............................. GAGCCAGCGTGGTTGGCCCGTCCGTGCCCGAC 44241 29 100.0 32 ............................. GAGTCGGCCTACCGCGCCGCGCTCGCCGCCCA 44302 29 100.0 32 ............................. GAGTCGGCCTACCGCGCCGCGCTCGCCGCCCA 44363 29 96.6 32 ............G................ GAGACGCGGGCCACCGGCCGCTACGACTACAC 44424 29 100.0 29 ............................. GACGACCCGGACAACTGGGAGGCGTTCGT 44482 29 100.0 32 ............................. ACGGCGCCGTCGAGAGCGACGCCGTTGCGCTG 44543 29 96.6 33 ............................T GCCTCCAGGGGCATACGTAGGAACCGCGCAAGT 44605 29 86.2 0 ..C..................AC.....G | A [44630] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.1 32 GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Left flank : AGCGGCCATCGACTCCCCCGTGCGCTTCCTCCGCCACCGTCTGACGACCAAGACCCCACCCCAACTCCCCACCGAAAGCACCGGATCGGGCACCACCGCCCCCACCGCCCGCAGCCTCCTCGTCGAATGCACGGAGTGCGGCACCCCGGGACCCCCCGAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCGCGAAACCCACAGCAACGGGGCCGTGGACCCGTCACCCGCACCCACCGAGGCACCGGACATCAAGGCCCGCATGGCCAACCTCCGGAACCTCCTCAGAAGCGTCTGAGGCAGGCGACGGCGGTTCAGCATCGATTGGGCGGCCTCTTATCCGGGAAACGAGCCGCCAGCCTCGGCCAACAGGGGCAGAATCTCCCCAGGCAGGCCCCGAGTCCGGAAACGGCCGCCTGCACGGCGAGGGAGATATGCCCGTTTCTCAAGAAGTAAGTAAAAACGAGCCTCACGCCGCATAAAACCGCAGGTCACGAACT # Right flank : GCCTCCGTGGTCGATCCCCCACCGGGCAGTCGGCGCACAGGAACCCTGCTTGTCCGGGCAGTCCGCGAGGTCCGCTGAGTCCGGGCTACAGCGCCTCGCCGGGAATCGACAGATAGGCCTCGCGGAGGCGGCCCAGCAGCGGGTGCTCGGCGGCGAACCCGGTCCCGTCGATGGCCGCCAGGGGGCGGACGCCGATGCCCGCGTTCGTCGCGAAAGCGGCCACCATCACGCGGGCGTCCTCCAACGTCAGGTCCGCGTCGCGGTGCTGGGCGGGCGGCGTCGGGTGCTCGCGCAGCAGGGCCATGGTGACGCCGGGCAGTACGCCGGATCGTGGCCACAGCACGGTGCCGTCCCGGTCGATGAGGCCCACGTTCCAGGTGGCGCCCTCGGTCACGTACCCGTCGCGGCCCACGAACAGCGCGTCGTCGTAACCGGCGAGCTGCGCCGCGCGCCGGGCGTGCAGGGCGCCGAACAGCCCGGTGTGCTTGACCTGGGGGAGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : GTCGTCCCCGCGCACGCGGGGGTGTTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //