Array 1 249023-245515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHO010000002.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-179SL opera_scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 249022 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 248961 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 248900 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 248839 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 248778 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 248717 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 248656 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 248595 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 248534 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 248473 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 248412 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 248351 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 248290 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 248229 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 248168 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 248107 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 248046 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 247985 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 247924 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 247863 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 247802 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 247741 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 247680 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 247619 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 247558 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 247497 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 247436 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 247375 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 247314 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 247253 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 247192 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 247131 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 247070 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 247009 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 246948 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 246887 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 246826 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 246765 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 246704 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 246643 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 246582 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 246521 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 246460 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 246399 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 246338 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 246277 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 246216 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 246155 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 246094 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 246033 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 245972 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 245911 29 100.0 32 ............................. GCGACCTGACTGAATCTCCTTTTTCAGTTGGG 245850 29 100.0 32 ............................. GTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA 245789 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 245728 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 245667 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 245606 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 245544 29 96.6 0 ............T................ | A [245517] ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 266817-265569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHO010000002.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-179SL opera_scaffold_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 266816 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 266755 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 266694 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 266633 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 266572 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 266511 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 266450 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 266389 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 266328 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 266267 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 266206 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 266145 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 266084 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 266023 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 265962 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 265901 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 265840 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 265779 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 265718 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 265657 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 265596 28 86.2 0 .........A..T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //