Array 1 2280-599 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWA01000001.1 Micromonospora sp. HM5-17 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 2279 29 100.0 32 ............................. GGCGCGGCCTCCTCGGCGATCTGTCGCAGGGT 2218 29 96.6 32 ............................T ATCCGCTGTAGCCTCACCCATTCGTCTCGGGT 2157 29 100.0 32 ............................. GACAACACCGTCCGCGACGAGCGGGCGCGCCG 2096 29 96.6 32 ............................T TTCCGACAACTGACACCCTGGTTGCTGAGCTG 2035 29 100.0 32 ............................. GGGTTGCAACGCCCGAGATGCGCATCATTGAG 1974 29 100.0 33 ............................. CACTGGCTCATCGGGTCACCGCCTCGGTGTGCT 1912 29 100.0 32 ............................. GATTTCGCCGACGACAACATCGACGAGATCCT 1851 29 100.0 32 ............................. GCGGCGTTGGCGATGAGGGTGACCGGCGGCAA 1790 29 100.0 32 ............................. CTTGCGCCAGTAGGATTCCGAGGAACTGTTAG 1729 29 96.6 32 ............................G CATGCTCCCGTCGCGAAAAAATTTGATGTAGT 1668 29 100.0 32 ............................. GTCGGCGTGTCGTCGCTGACCTCGGTCAGTTC 1607 29 100.0 32 ............................. CGGCTCCGGCCAGCCCACCGGCATCTTCACGG 1546 29 96.6 32 ............................T TCAGCTCGGCGTTGACAAGCAGATCGAGTTCC 1485 29 100.0 32 ............................. GTGTACCATGCCTGCCCATGGCCCATCTGACC 1424 29 100.0 32 ............................. TACGCGCTGCGGAAGAATGGCCAGCAGGAGAT 1363 29 100.0 32 ............................. CTGGCCCGCAGCCAGACGCCGGTGTCTGCGTC 1302 29 100.0 32 ............................. TACGAGCATCCGCGCTGGCGCGACCGGGGCCT 1241 29 100.0 32 ............................. CCACACCGCCACGGTCTCTGATTTGGCGGGTA 1180 29 100.0 32 ............................. GCGGTGGCGTCCAGGGCGGTCCTGTCCAACGC 1119 29 100.0 32 ............................. TTTCGCCAGTCTGACTCTGGCGTCGGGAGACA 1058 29 100.0 32 ............................. CAACCGCCGCGAACGTCTCAGCCAGCCTTAAG 997 29 100.0 32 ............................. GCGTGTGCACGCGCGCGCCTTTGGGCGCGCGA 936 29 96.6 33 ............................G CCGTCGAGCTCGGCGGTCGCGGCGGCCAGGGCC 874 29 100.0 32 ............................. AACAACGCCCCGTCCGGGACTCCCCGGGCGGG 813 29 100.0 32 ............................. TGCTGCCCTGAGCGGAAAGCAGCAGAGTCGAT 752 29 100.0 34 ............................. GGGACCGCGCTCGCCCACATCCTGCAAGCGCAGA 689 29 100.0 33 ............................. CGACCCCGAAGAGCCCAAGCCGAACCAGCCCAA 627 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================== ================== 28 29 99.3 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : GGCGCATCCGCCGGGCCGGTGAGCGGGCGGGAAGCCGACCGAGATCCTGCTGACCGCGGGCGGGTCGTCTTTCCGGACCGGGTTGCCGTCCTGAATCGGCTCCGGCTGAGCCGTTCGGTGCGCGTCGTCTGCTCCGGTGGGACCGTCGGCTACGACCACGGTCCCGCCGCGACGGCGGCGCCGCTCTCCGCCGAGCCAGGTCCGTCGCCGCCCACTACACAGCCGGCGCCTACCAGATCTGGCTCCGAGACCACCACCAGGCACACCACCTCGCCACCGCACCCACCCTCCCGGCCGCCCTGACCGTCCTCGGTCTCTGACCAGCACCCCAGCCACATCGACGCCCTGACGGGGGTCGGGTCCTCTTGCGCCTGCACAGGCATGCCTGCCAGGGTGAACCCCGGGCATCGGTCCTCATCCGACGGTCGAGGAGAGTGATCTTGAGGCGGCAAGTGAAGGAAAACCGGCGAGTTGATCTTTAACGCCGCAGGTCAAGAAGT # Right flank : CCGCCGACGGAATCCCGGCGGTTCGCTGGGCCATCTCGTGGGACCTGTTCAACGTCCTGCCCAACGCGGCCGGCGGTGATGTGGCGGGGTGGCCAGGTCCCCCTTCCCCCGCTGCTAGAGCAGGGTCCTCGTGGTCTTCGCGTTCAACCGACCGCTCAGCGGTCGGCCCGAAGGGAGGCGATGAACTCCGACCATGCCTGGCTGGTGAAGTCCAGGACCGGCCCGCCGCGGTCCTTTGAGTCGCGTACGGCCACAGCCTCGCCCATAAACCGCACCTCGACGCAGGCAGCGTTGTTGGAGCTGCGGCTCGACTTGAACCAGTCCCGCTCAGGGGTGCGCTCGTTGGGGGTCACGTCATCTCCTTGGCGATCTGCTGGATCAACTCCAGTGATTCGTCCGAGCCTAACGCGCGTTCCAGCGTCTCCTCAAAGGTGATGACGTAGTCGGCCACCCGGCTCGACTGGTCGATGATGTCGCACTCGCGATCCCCGAGCCACAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 306-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWA01000026.1 Micromonospora sp. HM5-17 26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 305 29 100.0 33 ............................. CAGGACGCCCGCGACCGGCTGGCGCGGTTCTAC 243 29 100.0 32 ............................. ATCCGCGCCGCCCGGGCCGAAGAGGTCGAGCA 182 29 100.0 32 ............................. ATATTTGCTGGCCACCCCCGGTCGGGCAGGCT 121 29 96.6 32 ............................T TCGGGCAGGAAGCCGCCGCCGATGGCTAACCC 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 99.3 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : CCGCCCCGGCCGACCCGCCCACCCGCCCCACCCCGCAGGCCGCGATCGCGTTCTGCCTCGACTACCTCGAACTCGCCATCACGGGGAACATCCCCGACGACCCGACCACCCCGATCCCGGTGCCACAAACCCCGAACCCGATCCAGGTCGACGACCCGATCCCGTTCCTGCGCCGGCTCGCCCGCCACCACGCCGGACAGCCCGTCGCCGTCCACTACACCGCCACAACCTGCCAGGTATGGCTGCGCGACCGCGAACACGTACACCGACTCGCCACCGCACCCACCCTCCCCGCCGCCCTCGGCGCCCTCGGCCTCTAACCACCACCCCAACCACATCGACACCCTGACGGGGATCGGGTCCTCTTGCGCCTGCACAGGCACGCCTGCCAGGGTGAACCCCGGACATCAGTCCCCATCCGACGATCGAGGAGAGTGATCTTGAAGCGGCAAGTGAAGAAAAACCAGCGAGTTGATCCCTAACGCCGCAGGTCAAGAAGC # Right flank : CACGGAGCGCGGGTCACACGTTGACGGGGGGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3-1440 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWA01000036.1 Micromonospora sp. HM5-17 36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3 29 100.0 33 ............................. GTCCTACACGCGGCGGACGGGACCATCGTGTCC 65 29 100.0 32 ............................. GTCGCGAAGCTGGTCGACCCGCCCGGTGCGCC 126 29 100.0 33 ............................. GGAGCGGGAGCGGGTTGCCGACGGCGCCACCCT 188 29 100.0 32 ............................. GAGACGTATGCGCCGCTGGTGGAGGCGATCGC 249 29 100.0 32 ............................. TCCAGCGCCGACTCGCGCAGGTCGTTAAGCAC 310 29 100.0 32 ............................. CAGGCACACCCCTCGGCTCTGGCCTTCGAGGC 371 29 100.0 33 ............................. CAGGACCTGTACACGGCGATCACCGGGGCGGTC 433 29 100.0 33 ............................. TCCCGGTACGCCGACCTGGTGCAGGTGAACGCC 495 29 96.6 32 ............................A CTGCCGTCGTCGGTGAGGCCGCACTGATGTGC 556 29 96.6 32 ............................G TGGTGATGCGTCTTTCAAGCGGCCAGTGACAA 617 29 100.0 32 ............................. AGCCCACCGGGACCGTCAAGAGGAATCGCTCT 678 29 100.0 32 ............................. CCTGCGCGACGATGACCTGCTGCCCTGGCATC 739 29 100.0 32 ............................. CCGGGCGCTCCTGGCTGAGCTGGAGCAATTTA 800 29 100.0 32 ............................. GACTCGCACTACACCCGGGTCGAGGAGGCCGG 861 29 96.6 32 ............................T CCTCCGCCGTCTTCACGGCGGAAAGCTTGGCC 922 29 100.0 32 ............................. GTGGCCAACGACGGGCAGCTCTCCAGCGTCGC 983 29 100.0 32 ............................. CAGCTACGCGCAACCGCGCTCGCCGGCACCGA 1044 29 100.0 32 ............................. ACGTCGAGCATCGTCCACAGGGCACTCGACTT 1105 29 100.0 32 ............................. CGCCCGGTACAGCCCCGACGACAGGCGAGCGG 1166 29 100.0 33 ............................. GGTAAGACCTGGCGCATCCGCGACGTCGTCAAC 1228 29 100.0 32 ............................. GGATGGCGGGTTATGACCTCGGCGCTGACTGC 1289 29 100.0 33 ............................. CAGGCCATCGCCAAACAGGGCGGCAAGGCCATT 1351 29 100.0 32 ............................. TGGGCTGCGACCACGTCGGCGTCCGCTGGCAT 1412 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.6 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : GCC # Right flank : AAGAAGATCAACGCCGGCCTGGTGGTTGACGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 977-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWA01000039.1 Micromonospora sp. HM5-17 39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 976 29 100.0 32 ............................. AGGTTGTAATCGTTGCGGTTGACGTGGATGAT 915 29 100.0 32 ............................. CCGCGTCGCCGCCGTCGTCGACGCCGTACCTG 854 29 100.0 32 ............................. TATTCAACCCACTATCTGGAACGGTTTGGGCT 793 29 100.0 33 ............................. GGGTCGCCGAGTCGCCCGACCCGAGGGCGCTGC 731 29 100.0 32 ............................. GCCGAGGTGCTCGCTCGGCTGAACCGACTCGG 670 29 100.0 33 ............................. GCGGCCACCTGTGCGACGTAGAGGAACTGGCGG 608 29 100.0 32 ............................. TCTCGCCGGGCTGACCTTGCTGTCGGCGGGAC 547 29 100.0 32 ............................. TGTTCTGGGCACTCGCCGAACGGATGCCGAAG 486 29 100.0 32 ............................. GCGTCGATCTGGCGTGCAGTTTTCCGGGTGGC 425 29 100.0 32 ............................. GCTAGACGCCATCCGTTGCCGTCACGCTCCGG 364 29 100.0 32 ............................. TCCGGCCCGGACGGCACCCCAGCCCCGCCCGG 303 29 96.6 32 ........A.................... TTCAAGATGTTCCTTGGTTTCGGTCTCATGCT 242 29 96.6 30 ............................G GGTGTACGTCTGTCCGGCCACGATCTGACT 183 29 93.1 32 .......AA.................... TTCAAGATGTTCCTTGGTTTCGGTCTCATGCT 122 29 100.0 32 ............................. CGTCCCTACCCAGCTCAGCCCTGGGACGGGTC 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.1 32 CTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : | # Right flank : CTAGAGCGCCGTGCCGCAGATGCGTATCCAATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50-1167 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWA01000002.1 Micromonospora sp. HM5-17 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================== ================== 50 28 100.0 33 ............................ TCCAGGACGGGCTCGTGTGGCGGCCGACGTGGA 111 28 100.0 33 ............................ CCGGTCGGGGCGCCGCCCTGGAAGACAGCGTGT 172 28 100.0 32 ............................ ATCGTGCGCAACGGTTTGCGTTGTCGGGTCGA 232 28 100.0 33 ............................ CGTCAAGCCGGACAAGTCCAAGTCCGGTGACAA 293 28 100.0 33 ............................ CCGCTGCCGGAGTGCTCGCCACAGGATCGGAGG 354 28 100.0 34 ............................ AGCGTCTGCCGATCCAGTGACAGACCCGTCCTGG 416 28 100.0 34 ............................ CGCCTTCGCCAGCGCGGACACGGCTGGCATCCGC 478 28 100.0 34 ............................ CGTACCGGTGGACCAGGGCTAGGACCCGCATCAG 540 28 100.0 33 ............................ CTGGTCGCCGGTGGCGCGCTCGCCGAGGCTGAC 601 28 100.0 33 ............................ CGGCTCCAGGTCGGCGTCGGCGATGATTTGGCG 662 28 100.0 33 ............................ CGCACACGGTCGATCTGCTCGGGGGTGAGTTCG 723 28 100.0 33 ............................ TCGCACCTTGGCTGTCAACCCCCGGGAAGGAGG 784 28 100.0 33 ............................ CCCGCACCGGATCCCGCCGTGGGATGCGGTCGC 845 28 100.0 33 ............................ CGGCAAGGGAGCGATCCTCGAGGCCCGGGCGCT 906 28 100.0 33 ............................ CGGCGGTGGATTGGGCTCCTGAGTCGGGCTATA 967 28 96.4 34 ...C........................ ATTCCCCTGTGTAGTTATCCTGCTGACAACCGGA G [984] 1030 28 92.9 83 ...C..............C......... GCGCTCGGCCTGGGCGATGTCGCCCCGCTCGATGTGTTCCCCGCGCATCCCGTCGTTCGGGCGGGGACGGTGAGGTTCACCGC 1141 27 85.7 0 C....T..G...............-... | ========== ====== ====== ====== ============================ =================================================================================== ================== 18 28 98.6 36 GTGTTCCCCGCGTACGCGGGGGTGATCC # Left flank : TACGCGGGGGTGATCCCTGCTGTACGACGGCATTGCCGGCGAGGACCTCG # Right flank : CCTGCGGGCACGATGGTTGTGCCTAGCGCGACCGTCTTGTCCGCCCCGTCGAGGTCATCTCCCTCAAGGGCGGCGGCTATCGGTTACGCGTCCGCGACCTTGGTCGCGTCTCCGGCGGCCAGCATCACCGACTGACCGCAAGCAACGGTCCAAGAGAAGGGGGTCACGATTCGCCCGACGCTGAGGAGTCACAGTTCAGCCGTCGCCGACAGCTGGGGGATGTCATCTAGCGCTGAGCATGTTGGTGTGGATCCACGGTCAGCGGTATTGCCGTGATTGTGCTGTGCTGTATCGGGTTGGCGGTGTTTTTCGTGCTGTCATCGTGCGGTAGCCGTCGCGTCCGCTGCGTGCGCGATTACGGTTCTGTCTCCTTGTAGGGGTTGTGGCTTACCATGGCGCGGGCATGTGTCTGGCGGGGCAGGTCTCGGTGATGTCGGCTCCGCTTCGGTCTTCATGGGACGGTGGGGGGTGTGATCTTGGGACGGCAAGTGAATGAAATC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1703-3571 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWA01000002.1 Micromonospora sp. HM5-17 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1703 29 96.6 33 ............................A CGGCGGGGACAACAAGCGACTCTTCGAGAGCCA 1765 29 100.0 32 ............................. TTGACCATCATCGATGATGCGATCAGGAACAT 1826 29 100.0 32 ............................. TTTGTCCCCGAGGTGTGGGCGGCCGAATTGCT 1887 29 100.0 32 ............................. TCGTCGGCAACGCTGGTCTCGCCGCGCTGGAT 1948 29 100.0 32 ............................. CCCGGTGAGGTTCCGCAGACGTGCCCAGTAGC 2009 29 100.0 33 ............................. GCCGAGGTCGCCTTGATGTCGCTGATCGACGGC 2071 29 100.0 32 ............................. CTGACATCGACGGGGTCGGACGGTACGATGGC 2132 29 96.6 33 ............................G TCGAGGCGAATTTCGTCGGTACGGTCGGTCACC 2194 29 96.6 32 ............................G GTAGGTCACACCATCACACGACGGCACCTACG 2255 29 100.0 32 ............................. TCCCACACCACCAACCTTCGCGACGATCTGGA 2316 29 100.0 32 ............................. CAGGTCACAGCCGCGCGCCCGGACGGGTCGTC 2377 29 100.0 32 ............................. TGCGGTAGCAGGGTTCCGATCAGCTCGGTGAG 2438 29 100.0 32 ............................. ACAATCCCTGGGTGGCGCAGCCGGTGGAGAAG 2499 29 100.0 32 ............................. CTCGGGGGCGGCAGCAGCCCCGCCGCACCACC 2560 29 96.6 32 ............................T TCGGGGTCCACGCGCTCCTCCGACGTCGTAGC 2621 29 100.0 32 ............................. GTGCGGACCTGTTCCGCCACATGCTCTCGCTC 2682 29 100.0 32 ............................. GGCGCCACGCCGAACATGGTCATTTCGTTCGA 2743 29 100.0 32 ............................. AGCGGCGGGGCGCCGTCGGTCGGCGCCAGGCA 2804 29 100.0 33 ............................. ACCCGCACGCCATCGAGTGCGCCAGCATCGAGC 2866 29 100.0 32 ............................. CGGTGTTGTCGGCGGGGCCGCCGACGCGTCGG 2927 29 100.0 32 ............................. GTCGAGGTGCTCGACCATGTGCCGGCCGCCGA 2988 29 100.0 33 ............................. GATGGGCAGCCTCGACGAGGAGACTATCGGGGC 3050 29 100.0 33 ............................. ACGGGGCGCGGATCACAAGTTGACAGGGGGCGC 3112 29 100.0 33 ............................. CCGAAGCTGACCAGCAACGCGATCACGGCGGTC 3174 29 100.0 33 ............................. ATTCAGCACGGAAAGTGACATGAGCATGATCAG 3236 29 100.0 32 ............................. CCGTGGCCGCGCCGCCGCGGAGCGCGGCGATT 3297 29 100.0 32 ............................. GCCCGCAGCGCACGCCGGACGGCAGCCAGGTC 3358 29 100.0 33 ............................. TCGCCGAACTTCGTCTCGGGTGACTCGGCGTGC 3420 29 100.0 32 ............................. GATCTGGTGGCCCGGCTCGCGGGCACGACCCG 3481 29 100.0 33 ............................. GCGAACGGCAGCGACGCGCAGCCAAGGAAGCAC 3543 29 89.7 0 ..G.........T.T.............. | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.2 32 CTCTTCCCCGCGCACGCGGGGGTGATCCC # Left flank : TTGTCCGCCCCGTCGAGGTCATCTCCCTCAAGGGCGGCGGCTATCGGTTACGCGTCCGCGACCTTGGTCGCGTCTCCGGCGGCCAGCATCACCGACTGACCGCAAGCAACGGTCCAAGAGAAGGGGGTCACGATTCGCCCGACGCTGAGGAGTCACAGTTCAGCCGTCGCCGACAGCTGGGGGATGTCATCTAGCGCTGAGCATGTTGGTGTGGATCCACGGTCAGCGGTATTGCCGTGATTGTGCTGTGCTGTATCGGGTTGGCGGTGTTTTTCGTGCTGTCATCGTGCGGTAGCCGTCGCGTCCGCTGCGTGCGCGATTACGGTTCTGTCTCCTTGTAGGGGTTGTGGCTTACCATGGCGCGGGCATGTGTCTGGCGGGGCAGGTCTCGGTGATGTCGGCTCCGCTTCGGTCTTCATGGGACGGTGGGGGGTGTGATCTTGGGACGGCAAGTGAATGAAATCTCGCTAGTTGATCTTTAGTGCCGCAGGTCAAAAAGT # Right flank : CGAAACCCCGGCTCCGGTCTCGCACATTCGGGAAAGATCTCGACGCTAGTCGATTTAGATGTCCCCGAGGTGGTCGAGTTCGGGGCCGATCCGTTCGCACAGTGCGACGGCGCGGGCGTCGGGGAACTGGCTCGCCAGGGTGTGTGCCTCCACCAGGTGCGGAATCGCCTCTGCTGGCCGACCCGCCTGGGTCAGGGCGGTCGCCAGATGCACCAGGGTGAGCGCCAACTGCCAGGCGTCGTCGAGTTGGCGATGGATGGTTGCCGCTAGGACGTGAAACCTGATCGCCTCCTCGGGCTGGCCGAGATCGACGTACGCCTCGCCGGCCCCGTCGAGCGCCATCGCCTCCCGGCTCCGGTCGCCGACCTGCCGTTGCAGCGTCGCGGCCGTGTGTACGGCCTCCAGTGCCGCCGCCGGCTCTCCCATCGCCCGCAGCACCCGTGCCTGCTCCACCAGCCAGTGTGCCCGCCACACCGGGTTGCCGGCGTCCCGGGCGATGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 7715-8172 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWA01000002.1 Micromonospora sp. HM5-17 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7715 29 100.0 32 ............................. TGCCGCCGCCGACAAATCCGGGCAGTCGTCGG 7776 29 100.0 33 ............................. CCGAAGGTGCGGCGTCGCTTGGCGCTTGACGCC 7838 29 100.0 32 ............................. GCGAATGTGCTTTTACCAACCCCGGGGGCGGA 7899 29 100.0 32 ............................. CACAGGGGCCCGCGGCTCATCGCGCCACCGCC 7960 29 100.0 32 ............................. CGGTCGGCGATCCTCGACCAGATCGAGGCGAT 8021 29 100.0 32 ............................. CAATCCAGTCGCGAGCGTCGCTCGTTCCTCGC 8082 29 96.6 32 ............................G CAGGCGGACCACCGGCCGGCGTCGAGGTAGCC 8143 29 82.8 0 C.CT........T.............T.. | T [8164] ========== ====== ====== ====== ============================= ================================= ================== 8 29 97.4 32 GTGCTCCCCGCGCACGCGGGGGTGATCCC # Left flank : GGCGCGGTGGCGAATTCTTGTCTATGGCTCGGTCACACGTACGCCGACTCGCCGCCGCGCCCACCCTCCCGGCCGCCCTTGGCGCCCTCGGCCTCTGACCGGGGCTTGAGTGGGAGGTCTGTCGTGCGCTTCGACATCTCGATGGCTCGGTTGTCGGATGCGTCATCCTGCTGACCGGTATGAGCTGCCTTGAACTCGATAGACTCGGTGGATTCTTCGAGGACCGTGATGATTGTTCCTGATGGGGGTGCGGCTTTGTGGATAGTGCGGCTCCGGTTCGGTCGCTCGCCATCGCCCGCCCATTGACGTGAGGGTCTGGGGTCACGTGGTTGCCGACCTGCCCCAGAGTGGTCGTCCCCTTGCGCTTGCACAGGTACGCCTGCCAGGGTGGACCCGGAAGTCACCGTATCGGTCCTCATACGACAGTGAAAGATGTGATCTTGGGGTATCAAGTGAAGGAAACTCGGCGAGTTGATCTTTAGCGCCGCAGGTCAAGAAGT # Right flank : CGGCTTGGTTTTCGATCCGGCCTCGGCGAGCGATGTCGACCTGGGCGGGTGGCTGGATTTACTTGTTGAAAGTTCGGATCAGGTCGAGGAAAAGGCGCAGCTTGTCAACGTCGGCTGGCTTTACCGGGTCGGGATTGAAGTGCATCACGCCGTTGCGCACCCTGCGCAGATGGTCGAGGCGGCTGATGAATATCTTGCGGTCCACCGGCCAGCCGAGCTGCGCCCAGCACTTGGGATTGTCCAGGACGGCCTGGTAGTTGCCCATGGTCATGGTCTCGAACGAGCGGAACGTCTGCCCGGCGGCGTCACACGCTTCGCGGACGGTGTCGGCGTCGAAGGTGCCCTGAATCAGCCGGCGCAGCTCCTGGTCGACCTCGCCGATCAGCAGGAACGGGGTTGCCGTCTCGTCGTACTTGTCGACCACGTCGGCGGCGGTGATGATGCCGGTGATCTTGCGGTCGAAGTCGCGGACGAAGATGAAGCCCTCCCGGCGGATGGTG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 966112-966566 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWA01000002.1 Micromonospora sp. HM5-17 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 966112 28 100.0 33 ............................ CTCGTGTGATGGGAATCGCGGTAGTCAAGCAGC 966173 28 100.0 33 ............................ TCGGGCACCATCACCGGCACCCTCGATCCACTG 966234 28 100.0 34 ............................ CCTGTGTCCGGAACCGCCGCTCGGCGTGGCGACC 966296 28 100.0 33 ............................ CCGACGGATTGCCAGCGCCGCCAGCGGGTGGGC 966357 28 100.0 33 ............................ CCATCTTGGTCACCGTCCGCCCTTTCTCGATGG 966418 27 96.4 33 .....................-...... CTGCACGGTGCGCCAATCCTCGCCGACGCCGTA 966478 28 100.0 33 ............................ CGCCCTCAAGACCACCGGTGGCGGTGATGGCCT G [966500] 966540 27 85.7 0 ......G..............T..-..G | ========== ====== ====== ====== ============================ ================================== ================== 8 28 97.8 33 CTCTTCCCCGCGTACGCGGGGGTGATCC # Left flank : TCGAGCGCAGTGACGACATCACCGTCGTCCGGCAGCTCTGGGAGTCGATCCGGAGTGAGGCCCTGAACGAGCAGCAGTCCATCGAGTTGATCCTGGAAGTGGCGGAGTCATGGAACTGACCGGCGCGGTCTGGCGGAAGAGCAGCCGCAGCAACGGCCACGGCGGCAACTGTGTCGAGGTGGCGGACAACCTGCCCGGCGTGGTGGGGGTACGGGACAGCAAGGATCCGAACGGGCCGGTGCTGATCTTCGAGACGGACGCCTGGCGAGCCTTCGTCCACACCGTCGCGTCACGGTAGGCGGCGCGCAGCCGGCGCGGTTGCCTGTGCCCGTCGGTCGCCGGCCTGGCTGGTGACTCGTCACGGCTCGTCACGCGGGTACGCCACCCAGCGATCGACGCCTTCGGACCCGTCCTCATGCGACCATGGAGGAGACACCATCGTGAGCAGCCAAGTGAAGGAAATCGCGCGAGTTGATCTTTAGCGCCCCAGGTCACGAAGT # Right flank : GGCGACGGTTGAACCTTGACCCTTTGGCGTCGGGTGAATCGGGACCCCTTATTTCGTCTGGATCGTTGCTTGTGGTTTCGGTGGTGTTGGCTGCCGGGACGCAGCTGAGGTCCGGTTGCGTAGCCGGTAGCCGTCGCCCTTTGAGAGGAGATGACCTCGGCGTGGTGGACGATGCGGTCGGTCATGGCGGCGACGGTGTCGTCGCCGAAGACCTCGTCCCGGTAGCGATTGGTCCCGTCTACGAGTGTGTCTCGACCGTTGCGCTGGAGTGGGCCGTTGCTGCTTGCTGCGTCGGTAGTCTCTCGGTTGACCGACTTGTCATCGACTCTGGACCAGGCTCCGTTCTCCTGTCGGGATAGGTGATCTTGATGTATCAAGTGAAGGAAATCGTGCGAGTTGATCTTTAGCGCCCCAGGTCAAGAAGTCTGTTCCCCGCGCACGCGGGGGTGATCCCCTGTTCGGCTCACTGCCAGCGACGGCAGAGGACTGTTCCCCGCGCA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCGTACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 966991-967633 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWA01000002.1 Micromonospora sp. HM5-17 2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 966991 28 100.0 33 ............................ CCTGTTCGGCTCACTGCCAGCGACGGCAGAGGA 967052 28 100.0 33 ............................ CTTATACGAGCCCGGCGACGATTCCGCCGAGAT 967113 28 100.0 35 ............................ ACCGGCGCGTGTCCGCGCATCGGAGCCGGACCGGA 967176 28 100.0 33 ............................ CCAGCCCCGCGAGTACATGGCGAGCTGCATCGC 967237 28 100.0 34 ............................ CCGCGGGCACGGACCAGATCCGATGCGGGGCGTC 967299 28 100.0 34 ............................ CGAGTCCGCGCCGGCCGACATGGCCTTGCTCGCC 967361 28 100.0 33 ............................ GTATGAGTCAGCAGATTGTCATCGTGGGATGAC 967422 28 100.0 33 ............................ CCAGGCTCCCCAAACCCAAGCCGGCCGACGCGC 967483 28 100.0 34 ............................ CTCGATGAGCTAGAGGCCCTAGGCGCCATCGTGG 967545 28 100.0 33 ............................ GGATGGTGGAACTTCCAAGGCGCGCGGCGTGAA 967606 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 11 28 100.0 34 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : ACGCGGGGGGTGATCCCGCCCTCAAGACCACCGGTGGCGGTGATGGCCTCTCTTCGCCGCGTACGCGGGGTTGTCGGCGACGGTTGAACCTTGACCCTTTGGCGTCGGGTGAATCGGGACCCCTTATTTCGTCTGGATCGTTGCTTGTGGTTTCGGTGGTGTTGGCTGCCGGGACGCAGCTGAGGTCCGGTTGCGTAGCCGGTAGCCGTCGCCCTTTGAGAGGAGATGACCTCGGCGTGGTGGACGATGCGGTCGGTCATGGCGGCGACGGTGTCGTCGCCGAAGACCTCGTCCCGGTAGCGATTGGTCCCGTCTACGAGTGTGTCTCGACCGTTGCGCTGGAGTGGGCCGTTGCTGCTTGCTGCGTCGGTAGTCTCTCGGTTGACCGACTTGTCATCGACTCTGGACCAGGCTCCGTTCTCCTGTCGGGATAGGTGATCTTGATGTATCAAGTGAAGGAAATCGTGCGAGTTGATCTTTAGCGCCCCAGGTCAAGAAGT # Right flank : CTTTGGGCCAGTCGTCCGGCTCCGGACGGTGGAGGGGCGACCCTATTGCCGCGCACGCGGATCGACCTCGCGTCGGCCTGCGATTGCGAGGGTGTTTTACGCTGACTCGCGCTCGTCGAGTGTTCGGGAGGTTTGGGTGCGCAACCGGCGCCGTGCCCGCGTTGCTGTCACGGGGATGATGGCTGTCCTGGCGGTTACCAGTCTCGGCTGCGGCTTCGTGCGGGATCTCGTTCCCAAGTCGAACGCCGACCCGCGGGAAGCCTCGGAAGACCAACCGACCTACGACTCAAACGCCATGGGCGAGGTCGTCGGGACGAACTGCCGCTACGACAGGGATTCCCGACAGTTCAAGTACGACATCTCGGTGCAGAACGCCTCGTCGGAGCACACCTTCACGTACAACATCTTGATCAACTTCACGGGCGGCGACACTCCCTTCTCGGATGACAGTTTCGGCGGCCAGAGCCTCCAGGTGACGGTGGCCGCAGGCCGGGATCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 116989-116410 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWA01000005.1 Micromonospora sp. HM5-17 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 116988 29 96.6 32 ............................T CGCTCTCATTTCTGTGTCGCAGTTGTCCTCCG 116927 29 100.0 33 ............................. TGGTGTATTCCACTCCTCTACGATCCCCCGCGA 116865 29 100.0 32 ............................. TACATAGCCTTGCTGACCACGCCGATCCTGCG 116804 29 100.0 32 ............................. CCGGCGACCGGCGCGAAGTTGCCGCCCCGTCG 116743 29 100.0 32 ............................. AAGCTGTTCACTGAGGCGGCGATGCAGACCGC 116682 29 100.0 32 ............................. CCCAGCGCGTAGAGCATGGTCCGGCGGGTCAG 116621 29 100.0 32 ............................. CGAACATAGGTGCCGTCGTGTGATGGTGTGAC 116560 29 100.0 32 ............................. GCCAACCCGTTGAGATAGTCCCGCAGGCGGCC 116499 29 100.0 32 ............................. TTGTATGCCGACTTCAGGTCGGGGTCGGCGTT 116438 29 89.7 0 .C................A.........T | ========== ====== ====== ====== ============================= ================================= ================== 10 29 98.6 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : GGACGAGAGCGGCTACGAACTCGCCAGCGGCCACAACTACGGCGGCGACGTGGACTTCTGATGACGGTCATCATCCTCACCGCCTGCCCGGAAGGTCTACGCGGGCACCTCACCCAGTGGCTGCTCGAGATCTCCGCCGGGGTGTACGTCGGTCACATCAACGCGCGGATCCGGCAACGGCTCTGGGCCAAGGTCATCGAGATGGCTGGTCCCGGACGGGCAATCCTCGTCCATCAGCAGCCCGGGGAGCAGAGACTGTCGTTCCTCGTACACGAGCATCACTGGGAACCGGTCGACTTCGACGGGGTCACGCTGATGCGCCGACCGACGGAGAGGTTCATCCCGAACCCGGCGCTGTCGGGGGGTTGGAGCAAGGCGTCCAAACGACGCCGGTTCGGCCGGCGGGGGACCTATCCACCGACCGCCGGTGATGGGGAAGGCGCCAAGGCAAAGTGAAGGAAATCGGAGTACTTGATCTCTAACGCCCCAGGTCAGGAAGT # Right flank : GGGTACCCGCCGTCGATGACCGTGACGGCCCCGGTGATGGACGGCAGCCCCAAATCGTGTGGACGGCGAGTCGGTGGGGCTGATACTGAGTGAATGGCCTGAGCAGCTGCGCGCGAAAGGCGATGTGCGCCGACCTGTGGGGCCATGCGGAAGGGGTATCGGTCGGTGGAGTCCGAGCGCACCGAGGACGAGGTTCTCCGGCGTCTGTATCGAGGTCTGCGGGAGCGCCGGTTGCCGCAGGACGTCGCGGTGGACCTGGTGGAGTTGCGGGCCGACCGGTGGTTGAGCGCCGCCGGCGTACGGGACCTGTACGGCCTGATGCACCGGGCGCGGGCTTGGCGGACGGCGCAGGACGCGGGCGAGATCGTTGACGGCACGATCGGGTCGTCGATGCCGCAGGCGTGGCGTCGGCATCCGGGGCTGGCACGGGCGTACGCGGCCGCGACGACGGCGATGGCGGTGGTGGCGGCAGCGGTCGGGGAGTCGGTCCCGGCGGCGGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40302-39786 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJWA01000016.1 Micromonospora sp. HM5-17 16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40301 28 100.0 33 ............................ CCCTTCCGGGAACCCTTCGCCGAACCCTTCCGG 40240 28 100.0 33 ............................ CTCGGGGTCGCGCTCGTATACCAGGATCCTACT 40179 28 100.0 33 ............................ CGGTACGAGCCACCTCGCGGGCGATGCCGCTAC 40118 28 100.0 33 ............................ CCAGTCCCGGGCGAGCGGATGCCACCGTTCGTC 40057 28 100.0 33 ............................ CCCCGCCGATCGGCCTCTCTGGCCATCCGGTCG 39996 28 100.0 33 ............................ CACCGACAGCGGCGACCGCCACAGCGCCAGCTG 39935 28 100.0 33 ............................ CTGACCCGCCGGGGCATCCCCGCCGAACACGTC 39874 28 100.0 33 ............................ CGTTGGCGATCGTCGACCAGACCGCCAGCGTGT 39813 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CACGCGGGGGTGATCCCGCCTCGTCGATGATGTTCACGTCGCCGCTGA # Right flank : AACTCACCTGGATCGGCAGGTTGTAGGTGAAGACGGCGAGCACCACAACCAGATCCACGACCCAGGGGCGCTGCCGAAACCAGGACCTGGAAGCACCGGCCGCCAGGCGCCCGACGCCCAGGGCATCGTCGCTTGTACGCGCGCGGGCCGATGCTTCAGTCATCCGCCCACCACCTTACGGTGGCGACGCGGCGCAGGCCGCTAGTCCCGCGTCGAACGCGGCCAGGAAGTCCAGCAACTGACGCCGTGCCGCCTCGTCGCTTGTGTAGTGGTTCAGGAATGTCGACGTGACGCGGTGCGAGCGGTCCTCGACCACCGTGACCAGCTCGGCGAGTTGACGGCGAGCCTCGACCACCACGGCCGACCCCACCTGACGGCACCACGCCTCGATGAGGGCGGGATCGGTGGAGACGGCGTCGATGCCGCAGCACGCGCGGACACACTCGACCTCGCAGAAGATGATGCCCTCGCTCAGGGGCGCTGGTATGTCGACCGAGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //