Array 1 34978-35395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVA010000011.1 Listeria seeligeri strain FSL L7-1000 NODE_11_length_107366_cov_43.066997, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 34978 29 100.0 34 ............................. CAGCATGGTAAATCGACAGTAATCACTGAGACCT 35041 29 100.0 37 ............................. GTTCTAGACCTGGTCTCGACAAATCACTTGTTAAAAT 35107 29 100.0 37 ............................. GTATTTGCGTTGTTTGAGCTATTCGACACCGATGTCC 35173 29 100.0 35 ............................. GATGTTTATTCGTCTTCTTTTCATTCTCGTTATAT 35237 29 100.0 36 ............................. TTTTTCCGAGCCATCATCACAAGCGCGGTTTTGAGT 35302 29 100.0 36 ............................. CTGTTTCCTTCTAGAAGCGAAAGGTGCGAGGCCTTC 35367 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 99.5 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCAACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGATTTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 41617-44761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVA010000011.1 Listeria seeligeri strain FSL L7-1000 NODE_11_length_107366_cov_43.066997, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 41617 29 100.0 35 ............................. CCAGTTTCGGGTAGTTATGCACAAGACGGTTGTTA 41681 29 100.0 35 ............................. ACAGCCTTTATCACAAGTTGGATGGAGCTAGCCAC 41745 29 100.0 35 ............................. ACACTTACACACCACACCAAAGTTAAATGCCGTAG 41809 29 100.0 36 ............................. CTCAATAAGCTCTCTTTCTGTGAAGGTCACTTGGTG 41874 29 100.0 34 ............................. TTGCTTTCAGAGGTGAGAAAAAACATGCAATCAA 41937 29 100.0 37 ............................. GTGGTCAACTTAAATGATGGGACACCAGTTAAATTTC 42003 29 100.0 36 ............................. GATAATTCTTGATCTAGCTCGTCCATTCTTGATTGG 42068 29 100.0 36 ............................. ACCATTATCGAAGCTGGAATCCAGATATTGATGGCA 42133 29 100.0 38 ............................. GCACAGATTAGACAGATTACCAATGCCAAAGTACAAGG 42200 29 100.0 35 ............................. TTGTTCATCTACAGCATAAACTAGGCGACAAGAAA 42264 29 100.0 37 ............................. CCGCTTTGTGGTAATAGCTCTTGACATTTTCAAATAC 42330 29 100.0 36 ............................. ATATGTATCTTGCGAAAAAACACGTAGATGCATTAC 42395 29 100.0 36 ............................. CGGATTAATCAATTTGGCAATCGGTGAAAACAAAAT 42460 29 100.0 35 ............................. TGCTTTTCGCGATAGTTTTCTACCGCTTCAACTAA 42524 29 100.0 36 ............................. TAATGTGTCAAGAGCTGCTAGAGAGTCCGGATATTC 42589 29 100.0 34 ............................. GCTTTTCAAAAGAAAATCCCGCTTATTGAAACAG 42652 29 100.0 37 ............................. CAGAGTACTTACTTATTCGCACATGAATTTAGCAATG 42718 29 100.0 38 ............................. TAAGCGAGTGTCCAGCGTGTTCGCTATGTCACTTAACT 42785 29 100.0 36 ............................. CATTGTAAAGCGAAATTAACTTTGTTCGATGGTGAC 42850 29 100.0 35 ............................. CGAAATACTCTTTATTTAGTCTCATTGTCCTAACT 42914 29 100.0 37 ............................. TAAAAATACCTGCCTTAAATTTATTTTATGTACTTCC 42980 29 100.0 38 ............................. GCGATTGAAATTGTGAAAAATCGTAAATTAACGGTACG 43047 29 100.0 34 ............................. AAACCTCGAAACGAGAAAAATCGGCAACTTTGGC 43110 29 100.0 34 ............................. CTTGTTTTTCTTGGGGCATCTTTCTACTCCTTTC 43173 29 100.0 35 ............................. TCAGTAGATTCACTAATTCTTCTTGTGTGTAATCA 43237 29 100.0 36 ............................. ATAGCTCAGTATAGATATGGATATATCTACGGAATA 43302 29 100.0 36 ............................. AAACATTAAAAGGAGTGGTTAAAATGAAAAAAGCAG 43367 29 100.0 37 ............................. TTACCTCAAAGTGGCAGATGGTTTTATGGGGTATATC 43433 29 100.0 36 ............................. ACGAATTATTGGACGGCTGGCTGACCGTGATATGAC 43498 29 100.0 35 ............................. GAAAGTTATATCAGTGAATCAGTAGTAGAATATGA 43562 29 100.0 37 ............................. TTAATTCGTCAGTTAATTCGCCAGTTAATTCAATAAC 43628 29 100.0 35 ............................. CAAGGTCACCAAAGTTCCATTTCGATAGGTCGGTA 43692 29 100.0 42 ............................. TGGTTACTGTCAGTAATTGAACCTGTTTAGTATCGACGACGT 43763 29 100.0 36 ............................. TCGTCCCAGCAATCATCAACAATTAGCGGATTTTCA 43828 29 100.0 33 ............................. AAGCTTAAATCTGAAACATTCCAAGAACCATCA 43890 29 100.0 36 ............................. ACACTATCTACGTGGTGTATTTCACCTCTGCGACCT 43955 29 100.0 37 ............................. AGACCAGACCAGTTCATCACAAACAGTCCGGTCGTCC 44021 29 100.0 35 ............................. TTCAATCACCTTCTTTCTTGTGTATCGACTTTATT 44085 29 100.0 36 ............................. CTAAATACGCCAGAAATGACCTGCCAGATGCCTTTT 44150 29 100.0 35 ............................. CTATGATATCTTCAAGGGCATATCTACATGTATCA 44214 29 100.0 35 ............................. ATTAGTTGTACTTCATTCATTTTCATGATAATTCC 44278 29 100.0 36 ............................. ACTAATCAGCCCTATAATGATATCCCGACGACTATC 44343 29 100.0 36 ............................. TGACATCACCCGTTAAACCCACCACAACATGTCCCC 44408 29 100.0 35 ............................. TCTGGTAAATCGTCCATGTCAAAAGGTAGGTCTAA 44472 29 100.0 37 ............................. AAGTTTTTCCGGTTTTCAGCAACGATGACTACGAAGA 44538 29 100.0 38 ............................. AACTTTTTCTGCTGCCTCATTTGTCATTTTGCACCTTC 44605 29 100.0 35 ............................. ACGACTAAATACGAATCAGCTAGGCATCAAATGAA 44669 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 44732 29 86.2 0 ........C....C..A...........G | T [44758] ========== ====== ====== ====== ============================= ========================================== ================== 49 29 99.7 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGTGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACAAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 53360-54883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARVA010000011.1 Listeria seeligeri strain FSL L7-1000 NODE_11_length_107366_cov_43.066997, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 53360 29 100.0 35 ............................. AGTTTTACGAGATGTTCGTTATTTCTGTCATCAAC 53424 29 100.0 36 ............................. CCATTTCCTTGATAATTACCAACGCCATTTCAATTT 53489 29 100.0 37 ............................. TAGCCAATTTGGGCTAGGAATTCAGCCGGGGAAAGTC 53555 29 100.0 34 ............................. TCAATCACCTTATATAATCGCAATGCTTCTGCTT 53618 29 100.0 37 ............................. ACTTTCTTATCATTATTTGTTTTTAGTACTGGTTTTC 53684 29 100.0 35 ............................. AGATACTAAGGTGCGTGGGTGGCTATGGGAATCAT 53748 29 100.0 36 ............................. TCCTTATCTATTTATATTTTGTGTTCCTTTACTATA 53813 29 100.0 36 ............................. AAAAGAGGAATAGACTCTAAAGTTTACATTTTTAGG 53878 29 100.0 36 ............................. GGTAATGGATTCTATTGAAACATCGTATTTAGAACC 53943 29 100.0 38 ............................. CAATCTAACATGGTGTGCCTTCGCAAAGTTGCCAACAC 54010 29 100.0 35 ............................. GACGAAACCGACAGCCTGCTAGAGAACATAGCAGA 54074 29 100.0 36 ............................. GAAATAGTCTTCGTGTTCTTCCGCAACGTCCTTGAC 54139 29 100.0 37 ............................. ATCGTCACGGTTTGAAGTGCTTTAGTCAACGAAGAAT 54205 29 100.0 34 ............................. TTGTGCGAAAAACACAAACAAGATTTAATTTTAC 54268 29 100.0 37 ............................. TTTGTAGGGATTGCTATCCTTCCATTATTCCCGTTAT 54334 29 100.0 37 ............................. AATTGAGGGCCTAGTGGGGTAAAACCCGTGGAGGTTC 54400 29 100.0 37 ............................. CATTACAAATTTCGCACATTATTCCGCCACCTCTTCA 54466 29 96.6 35 .......C..................... GACGCAGGATTTGGTAAAGGCGTAGGTACACGCTC 54530 29 96.6 38 .......C..................... ACTGAATTGGACTTCGAACTCTTGGCCTGTCAAATAAC 54597 29 96.6 35 .......C..................... TATTTATTCAACCTCCATAAGTCCGCGCGCGGTAT 54661 29 96.6 35 .......C..................... ACAGCTTTGTGTGTTCTTTCTTGGTGTCCAGTAGT 54725 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 54790 29 82.8 36 ..A....C....C........TC...... GTGGTCAAAGCCTTCTTATTGCCAGCAGGTGAGCCC 54855 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 97.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACCCCCCAACCCTCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //