Array 1 174973-176493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJLN01000224.1 Escherichia coli 2-005-03_S4_C2 e200503S4C2.contig.223_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 174973 28 100.0 33 ............................ AGGAAGATATCGATTTGATTATTGGAAAAAGTT 175034 28 100.0 32 ............................ TCAGAAATCGGGACAGGATGTGGGAATGTCGG 175094 28 100.0 32 ............................ AAACTGAGGAACAATTCCGGTTTTATAGTCAC 175154 28 100.0 32 ............................ GAGTTTCGAATGATATGACAAATCTAAATAAG 175214 28 100.0 32 ............................ TGGGATATTCCGGCGACCTGGTACGGGGATGT 175274 28 100.0 32 ............................ AACTTCGTTAACAGCGACTGCCGAAGCCGTAT 175334 28 100.0 32 ............................ TGTTTGAGCTTCAAATTGCTCACCTGTTTCTA 175394 28 100.0 32 ............................ GATAAAAATAATATTGGTTACTCCACGATAAT 175454 28 100.0 32 ............................ GATCTCAGTGCGGGACTCTGCTTTCATCTCTC 175514 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 175574 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 175634 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAACGCTCATT 175694 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 175755 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 175815 28 100.0 32 ............................ GCCTGCAACCACTGATTGAGAGCTTCACACAT 175875 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 175935 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 175996 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 176056 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 176116 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 176176 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 176236 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 176296 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 176356 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 176416 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [176464] 176464 28 78.6 0 CC..................A...C.CT | T,C [176482,176486] ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 185553-187202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJLN01000224.1 Escherichia coli 2-005-03_S4_C2 e200503S4C2.contig.223_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 185553 28 100.0 32 ............................ AAAAGGGATAATGTGATTACTTATTTCAACGT 185613 28 100.0 32 ............................ TGGAAGGTACGCGCTGTTTTATTTCATTATTT 185673 28 100.0 32 ............................ AACGTAGTGAGCGAGTGGGCGAGGAAGCGGAA 185733 28 100.0 32 ............................ TCGAGGTACTCCTTATCCTTCGGCCGCTTTCC 185793 28 100.0 32 ............................ GCGCACGCTCGCTCAGACATTCCCCACCTGGT 185853 28 100.0 32 ............................ CGAAGCGCGGCGCAGCCGCTGACGAACGTACC 185913 28 100.0 32 ............................ GCGCACGCTCGCTCAGACATTCCCCACCTGGT 185973 28 100.0 32 ............................ CGAAGCGCGGCGCAGCCGCTGACGAACGTACC 186033 28 100.0 32 ............................ GCGCACGCTCGCTCAGACATTCCCCACCTGGT 186093 28 100.0 32 ............................ CGAAGCGCGGCGCAGCCGCTGACGAACGTACC 186153 28 100.0 32 ............................ TGAACGCTATCATCTTCATAAGTCACCCCAAC 186213 28 100.0 32 ............................ AGCAGCCCCAATCCCTAAAAGAGCCATTCCCT 186273 28 100.0 32 ............................ TTCCATGCCCTGACGGACATTTAAAACCCGTT 186333 28 100.0 32 ............................ CAGACGGTTTCCGGTTGTGCTCAAGGCACTGC 186393 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 186453 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 186513 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT 186574 28 100.0 32 ............................ TCTTGCGTCCCCTGAAATACATCAGGGGATTT 186634 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 186694 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 186754 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 186814 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 186874 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 186935 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG 186995 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 187055 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 187115 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 187175 27 92.9 0 .......................-C... | T [187195] ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //