Array 1 2813039-2814078 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050440.1 Tolypothrix sp. PCC 7910 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2813039 37 100.0 35 ..................................... CAAGAGGAATGGGAAAACAGAGCAGCCGCATGGAG 2813111 37 100.0 33 ..................................... ACGAGATACGTGTTTATGGTTGTAGAAGATACA 2813181 37 100.0 34 ..................................... ACATCTTTTTCTTTGATGGATTCAACCAAACCAG 2813252 37 100.0 34 ..................................... ATTTGAGTTAACAAGAGTTCCATCTTTATCTAAA 2813323 37 100.0 33 ..................................... TTCAAAGTTACCACATCTAGGGAAAGCAAAGTT 2813393 37 100.0 36 ..................................... ATATAATCTTTTGACTTTAGTTAAAGTATCAGTATT 2813466 37 100.0 34 ..................................... TATTAGATGGCTTCCGTGAAGATGTAAATCACTG 2813537 37 100.0 34 ..................................... CAAAATTTACCACCACCTATCTGCAAAATATTTC 2813608 37 100.0 37 ..................................... TGTAGGTGGGAAAATCAAGCAGATTCCCAAGGATGGG 2813682 37 100.0 35 ..................................... ACGTATTGTTACGAGAGTATTGACAGAGTAAAATC 2813754 37 100.0 35 ..................................... CCGTTGTTAAATCTGAAAGCTTCATAGCCGATCGC 2813826 37 100.0 35 ..................................... ATTTAATATCCGGTCACAAGTCGGATACCCACACG 2813898 37 100.0 33 ..................................... GATAATCATAACGTGCCGACTTTGATGGGGCGA 2813968 37 100.0 37 ..................................... TTAAAGCGTGTCGAAGACTACTACTTGCATATTTTTG 2814042 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 100.0 35 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTCATATCCTACGATATTTCCGAAGACAAACGCCGCACCAAGATTCATAACATTCTCAAGTCTTATGGGCAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTGAATGACACCCAGTACGCCAAACTGCGAGCGCGATTGCATAAGTTGATCAAAACTGATACGGACAACATCCGTTTTTACTCTTTATGTAGTTGCTGCTTTGGTAAGGTTGAACGTATTGGCGGCGAACCAGTCCCCAATGATACTATTTTCTTTGCCGAATGCGCGGATGGGTAGGTGTGGAAAATATAGTTTCTCCAAAAATTAAGTGAAACTATTTCTACTTACGGCTTTCAACCATTCACTGTTGTCTAATCACCCGCGTGCCTTACAGAGAAAGACTTTCAGTCATTTTAGTTTTGCATTTTTACTATTGCTCATGCTATTATGGCGCTATCCGCGCTCCAGAACCTTGAAAACTGCATATAGATCAACTTTCAAGCTTCCGCC # Right flank : CGATATTATTTTTAATGTCACAGCGCTCACATTCTGGTAGTTTCGGCATGATATTGTTTGAATTTTGCTGGTTGTATTGGCTAGTTATTATACCTAAAAAATAAGTAATCTTCCTCAACGCACTTGCGACATCACCCCAAAAATCAATGCTTTTCTAGGATGCAGACAGATGAGATTGTTCTTTTGTGATTGTGGATTGTTAATTTTCATCTAATGCTGAATTTTTATTTCTGTCCTCCCTTTCCTGGCAAAGGTAATGATGCTAAATTTCCTTTATTTACAATGCTCCAAGATAATTTATGAATAAAAGTGAATTAGTAGATGTTGTAGCAGCTAAAGCTAACATGACAAAAAAGCAAGCTGATGAAGTCCTTTGTGCTTTTTTATCAGTGGTAACCGAAGCTGTCGCTAATGGCGATAAAGTGACGCTCATAGGATTTGGCTCATTCGAGCGACGCGAGCGCTCAGAGCGTGAAGGGCGTAATCCCAAAACCAAGGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 2 2817862-2818195 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050440.1 Tolypothrix sp. PCC 7910 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2817862 37 94.6 37 .C......C............................ CACGCAGTTGGCAACGTAGGTTTTAACGTGATGCGCG G,C [2817866,2817868] 2817938 37 100.0 39 ..................................... AAAATGGAGGGCGCGACTCATAGAGACTTAGGTGGGTCA 2818014 37 100.0 35 ..................................... CTCCCCACACAGCACGGCTGATTATATTAATACTC 2818086 37 97.3 36 T.................................... TCTAAACGATAAGGTTTATGCGATCGCTAGTGGTGC 2818159 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 98.4 37 GGTTTCCATTAATTCCACTTCTTATTAGGGAAGTGAC # Left flank : ACTTTCTGCTGCTGGCGCGGGAATTTTTTTAGGATACAGTGCTAGAGATCAGCGTCAGTTTCTTAGTCAGGATAAACAAGAACGTTCCCAGGTTTGTATGAGCGTTGAAATGTGGTTTACTGACACTATATTTCGATTTATTACAGAAGGCACAAAGAGATTTCCAGCACAGCAAATGAAGATGTCACCACCTGTAGAAGGTGGAAGGGTAACGCTGCCAAAATCGATATTCTGCTTAAAAAAAACTGGAGATCCACTATTTCCCAATCGCTTTCGAGTAATATTGCCTAAATGGTCTTTGGGTGATGTTGAATTACTAAGATGGATTATTGGTTTTGGTGGAAATGTAAAGGTAGTACAATCTCAGGAATTAATGGAAAGATTAAAGAAATGGGTGAGGCAATTGTTAAAGTGTATAGTAATTAAAAATTAAACATATATTTAAACTTATTTAAAAAGGTCTAGATATTAATATCTAGACCTTTTGTTTTTTGAATTCT # Right flank : CCCCTCCAATTTAAACCCTGACTACGCCTAATGTCCAGCAGCCATTTGCGACGGGGTCAATGAGTACAGCACTTTTGACCAGAAACAGAGCATCTAAAAACCTTAAAATCCTTACACAGAAAGACATCGGCCGGTTCGACGAGAATATAAGCATTTCCAGCTTTTGCTGACCCCGCCGCAGAAAGTGCAACATATTGCTTAAATTCGTCATTCGCATGAAAACCCTAGCATCATATCAAACCAACCTTTACCTTATGACATAGACCAAATGAAAAGAAGCATCAATATATATATGTATCTATCTTCCCGTGCTGCATTAGTTCGCAATCTGGGCGTAGCCTTACTCAACGGTAGTATCACACTCATTATCTTGCTAATCGCACCCTTGGGACTAGCAGCTGTAATTATCAATACTATCCTCGTGACAGTTGCCAGTTTTGTCAACGCCACAGCAGGCGATGCAATAGTCAATTTTCTTCAACCATCTCAAATAAAAACAT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTCCATTAATTCCACTTCTTATTAGGGAAGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 3 2827140-2828186 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050440.1 Tolypothrix sp. PCC 7910 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2827140 35 100.0 40 ................................... TAGTTCCATCAGATTGTTGAAATTGAGTTCCAACAAAGCA 2827215 35 100.0 39 ................................... TTTATGATCACAATCTTGCCCGTGATGGCAACAGCGCAC 2827289 35 100.0 38 ................................... GTCAGACGACCATGATCCGGTTTCAATTAGATCAGAAA 2827362 35 100.0 35 ................................... CAGTGAGGTGCTCACAATACTTCCAGATTGGGACT 2827432 35 100.0 35 ................................... TTTGGATTGTTGCCGTCGTACATCGGTGTTTAATC 2827502 35 100.0 37 ................................... TGTTAGATTGACCTGAAGCTGATACTTTAGGTGAAAA 2827574 35 100.0 36 ................................... TAATGTCATCAGAATGATAACATGCTGTTACTAAGG 2827645 35 100.0 36 ................................... ACTCAGTAAACACAATCTATGTTTATCTGATTTAAG 2827716 35 100.0 35 ................................... AAAAAGTTTTATTCCTTGGTATTTCTCAGGCAAAG 2827786 35 100.0 37 ................................... AATTGATCACCTTCACCAGCTTTAGCGACTGATCCTA 2827858 35 100.0 36 ................................... GATGGAGAAATCACTAGAAAAGCAGCAGAAACAGCA 2827929 35 100.0 39 ................................... GTTTAATCTCTGCTAACAATCTTTGACCAAATGCAATTT 2828003 35 100.0 39 ................................... AACACTACTTTTCCTTTTTTGCCACCACTTTTACGATAC 2828077 35 100.0 41 ................................... TATCAAAAAACTCTTTATCAATATCAATTCCAAGATATTTT 2828153 34 94.3 0 .............................-...C. | ========== ====== ====== ====== =================================== ========================================= ================== 15 35 99.6 37 CTTTAAACTTCTTCGGAAGTTGAACTAATGGAAAC # Left flank : TCAGCCACATTCGCTCAAAAAGTTTCTCAAACATTGGGAAGAAAAGTTACAATCTGATGTAACACATCTGCATACCGGATATCAAGTTAATTTCCGGCGATGTTTGGAGTTACAGGTAAGGGAGTATGTTGCTTGTTTAATGGGTGAGGTAGAGATGTATCGACCGATGATTTGGAAGTTATAATCTTTGTTGTAAGCAGAAAAAAGTCAAAATAAATAGTAAATTAATTTTGATTTTGCTTTTTTACTTTTGCCTAGCTCGGTGATTGATTATCACAGCTTATAGATAAACTGTGATTGATAAGCATCTGAGGGGGTCAGACAACGACTGAAACCCTTATTCTTACGTTGACCCCCTCAGATAACTTTCTGGATAAAGGTTTGGAGGCGATCGCAAGTGAAATTATTGACACTCATTCCTAATAATCTGGGCAAAAACTTGACCCCCTCAGATTTAGGGGTGTAGAATGCAGTCACGGTAAGGCTTTCAAAAGCCTAGC # Right flank : CCGTCCACTGCACTGGCTCACTTTTTACTTTTGCCTTGTTCGGTAAGATATTCATCTGCGATCGCAAACTTGCCAACAAACAACAGAAGCCACTATCGTTAACTCAATAGTAGCTTTCCTCAACTCAATAGTGGCTATTCTCAATCCAATAGCAGCTTTCCTCAACCCAATAGCGGCTATTCTCAACTCAATAGTGGCTTTCCTCAACTCAATAGTGGCTATTCTCAACCCAATAGCAGCTTTCCTCAACCCAATAGCGGCTATTCTCAACTCAATAGTGGCTTTCCTTAACTCAATAGCGGCTATTCTCAACCCAATAGCGGCTTTCCTCAACCCAATAGCGGCTATTCTCAACTCAATAGTGGCTTTCCTCAACTCAATAGCGGCTATTCTCAACCCAATAGCGGCTATTTTCAACTCAATAGTACAGCTTGGCGTAAATAAAGCTACTATTTCTAAGATATAAGGTTGGGTTTCGTTCCTCAACCCAACACCTCAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 4 2832457-2831769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050440.1 Tolypothrix sp. PCC 7910 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 2832456 35 100.0 37 ................................... ATTTGGGTTGTTATGTTCACCCAATATCCATGCATTA 2832384 35 100.0 38 ................................... TGCTTCGCTGAACCGCTCGCAATGACGCGAGGCGAACA 2832311 35 97.1 42 ....T.............................. TGGATTCCCAATATAGAGGCTCCATTTGACACGAGCCAAAGG 2832234 35 100.0 35 ................................... GTATTTTCAGTTACATTAAGACCTGGTAATGTAGT 2832164 35 100.0 39 ................................... GGGGGGCAAATCTTTCTTCAAAGACCCTTCACTTAAATT 2832090 35 100.0 36 ................................... TGTAAATACAACCTCCTTCTGCGACAAAGGCAGCAG 2832019 35 100.0 37 ................................... TGTTAAGTAAGTTTTCGTAACTACCTTCCAACTTTAC 2831947 35 97.1 38 .....................C............. ACTCTCGAAGTCTCCGGTAAGTGTTTTATCAATGTCAG 2831874 35 100.0 36 ................................... TTTCAGCAATTATTTGCTCTCTATTTCCATATTGGA 2831803 35 91.4 0 .............................TT...A | ========== ====== ====== ====== =================================== ========================================== ================== 10 35 98.6 38 CTTTGAACTTCTTCGGAAGTTGAACTAATGGAAAC # Left flank : TAGAGTCAGGATATATAACTGTAAGTTCAAAAGCTTGATTTTATAGCTGTTATAGCTTGTGGTTGATTGGTCTCGATTTACATAGGTAATTTTTGTACTGCTAAATATATACTTCCCTATGAAGGCAACTAATTACGCAAAAATACGGTCAAGTTATATATAGTTTTTGTAAATTCAATTAATTTAATTAAGTAATATCAATTAAATTAGATGCGAAACCTGCGATAATGTTTCTGGGAAAACGCAATTTTGGCATCAAGTTTTAATTGATTAGCTAATCTTATAATTCAATTGTTATTGATAAGCATCTGAGAGGGTGAGACAATGGCTGAAACCCTGATTCTTTCGTTGACCCCCTCAGGTAACTTGCAGGGTAAGGGTTTGACGGTAGTCTGTTGTCAGATTATTGATACTATTTCTCAATAATTTGAGTCAAAACTTGACCCCCTCAGATTTAGGGGTGTACAATGCAGTCACGGTAAGGCTTTCAAAAGCCTAGC # Right flank : ATAAGAAACCTCTAACCATTTATATGGTTAGAGGTTTAGCACGTCAGATGTGAACTGAATGCCAATGTTTCCATTAGTTCGACTTCTTATGAAGTCAAGCAACTCAAGTAAAATTCAAAATTTAAAAAGCAAAAGATAAAAGCATCAACTTCAAACCATAATTTGAATCAGCTTATTCTATTTTTACTTTTTACTTGAATTACGTTTGAGGATTAAATTTAACTGCAAACGTTACATTATTCAATTTTCTTTTCAGCACTTGTAGATAAGCACTTGCCTCATCTTGGCGGCGAAATCTTGCCACCACTATAAACTCCTTGTTAGGTAAAGTGCGAATAATGCACCACGGATGCAATTGCTCAAAATAGGTCATATTAACCTCCTACAAGCGCTGAAATTTATCTGAACAATGCACTCTTAAGTTGCTGAGATTTAGACTAATTCAGGAGGTATGTATTAAGACAGGTCTAATTGATATTGACAAGTAAGCAATTGTGTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAACTTCTTCGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 2843846-2845934 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050440.1 Tolypothrix sp. PCC 7910 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 2843846 35 100.0 39 ................................... CTAATTGTTCTCCAAGTTCATTCGCTAAGGATTGAACAT 2843920 35 100.0 40 ................................... TCTTCGGAGAGGCCAGTTCTCAGGAGTTGGCTCATAAGAT 2843995 35 100.0 41 ................................... TTTAGCGAAAGCATACCTGGGTTCTCATGATGGTTTTGATG 2844071 35 100.0 38 ................................... AATTTGCTTAGGCGTGGAACAACGTGAGCTATTCCCTG 2844144 35 100.0 39 ................................... AATATTGCTCAAATTTAGCTAGACTATCAATTCCATAAC 2844218 35 100.0 38 ................................... TCTGGTGAGTTTAGAGCAAATAACCTCTGGCTGAAAGT 2844291 35 100.0 38 ................................... TGGTGAGTTCGTAGGCGTTGGAACTGGCGAGTTCGTGG 2844364 35 100.0 40 ................................... CAGGTGGTTTACTGGCTCACACACTTTCGTTGCCCAAGCA 2844439 35 100.0 38 ................................... CCGTTGGTGACGCTGTTGGCTTACCTGTATGAGTTGGT 2844512 35 100.0 36 ................................... TAAAGTCTGCAAGAGCTTCTCTTGTTTCACTTACAA 2844583 33 85.7 39 .................C.--.GT........... TTGGCGATTTTCAACTCATTTGCTAATCGCTTGAAAGCT 2844655 35 100.0 41 ................................... ACACATTTGTTATGTTACCTTCAGAGTCATCAACTGATGTA 2844731 35 100.0 41 ................................... CTTTTCCAACAACATACATTAATGCCACGAAAAATAAAGGT 2844807 35 100.0 39 ................................... TTAAAACCTAATTCCATCAAAGTTTGAACAAGGTCAGGA 2844881 35 100.0 38 ................................... TTCTTTGTCTTTACTTTCTCTGCCAGAAAGTATAAGAG 2844954 35 100.0 38 ................................... ACGTCGTCAGCGACGTCCTCAACACCTTTAACTTGATT 2845027 35 100.0 37 ................................... ATTCAGGACCTAATTAACTAGATCATCTTAAGAATTG 2845099 35 100.0 38 ................................... ATTGGTTTTATGAATAACCTTATTCAGATAAAAAAGGT 2845172 35 100.0 37 ................................... GCGTCAGAAGGATTGTTTAGATCAATCGTACTAACTA 2845244 35 100.0 34 ................................... GTGTAGCCATTGATAGAAGGATAGAAGTACCTAG 2845313 35 100.0 40 ................................... TTAATTAAAAGAAATTTGCAGATAAGTGAATCGACTAAAT 2845388 35 100.0 37 ................................... AATTTTGGAAACTCGACCAAGCGAGTCCACAATTTTT 2845460 35 100.0 37 ................................... ACAAGAGGATCAAGCATTGAATTCGCTTGTTGCCCAA 2845532 35 100.0 36 ................................... TTACTTTAAGAAAAGCTACGAAAGCTAGAATCCCAC 2845603 35 100.0 40 ................................... GTGAGTGTGCCTTATTCCAACCCCTATAGAAGAGCTTGAG 2845678 35 100.0 36 ................................... TTTCTTTGCTCCAGTTTGATTGACAAGGTGCCAATT 2845749 35 100.0 39 ................................... TTTTTACAACTAGACTAGCTTCTACTTTACTCTCCAGAA 2845823 35 100.0 42 ................................... CATTTCCCCAAGCCTCAATATCTTTTAGTCCTTCATCGGTTA 2845900 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 29 35 99.5 38 CTTTAAACTTCTTCGGAAGTTGAACTAATGGAAAC # Left flank : GATTAGTAGTGTAAGAAGAAAAGATTGTATGTTTAACAATGAATACTTGCAAGGAGTATTAACAGTTCAAAATCTCCTGTAGATTACTCGCTTATAGTAGCCACTACGCATCTACATAACTAGGAAAGCTAGATCCCAAAAATGATATTTTCTGAATTGTAAAAGAACTGGTATTATAAAAATTAGTTTGATTGTTAAAAAAATCCATACACTTTAATCATATATAACCCTTTTGCCTGTTGCCTGTTAACTTTGGTGATCGCTTAAATATTAACTAATCTTATCTATAAGCTGCCATTGATAAGCATCTGAGGGGGTGAGACAATGGCTGAAACCCTGATTCTTTCGTTGACCCCCTCAGGTAACTTGCAGGGTAAGGGTTTGAAGCTAGTCTGCTGTAAGATTATTAATATTATTTCTCAATAATTTGAGTAAAAACTTGACCCCCTCAGATTTAGAGGTGTAGAATGCAGTCACGGTAAGGCTTTCAAAAGCCTAGC # Right flank : CCTATTAAAGCTACCAGAACCGATTGCTTGTGGCATTGCTTTAACTTGCCATAACGATAATTTTTAACACATAGCTACTAGTATTGATGTTTTCTTGTTTGGCTTACGCCTGAAGAGAACTGAAGGTATTCAGAAGCAATCAACCATGATTCAGGCAATAGATTTTGAACAAACATTTGTTACCCATCTTGAACACTTCATGGGGAAAGCAGATAAGTTCATCAAGGTTTATTATACAGGTATAAGTGAAGAAACCCATCTCCAAGAAATAATGCTGGCGGTGAAAAATCTCGCACTTGATGCAGACTTAAAACAGCTAGAAGCTGAGTATCAGATGTACAGCGAAAGAAAAGACTTGTTAGCTGATTATGATGATTCAGCTTGGTGGTAATCTGTTTCAATGATGGGCTGAAATTATCAACTAGATTTAGTAAGTCGAAAGTCGGAATTTTCAAAATAGTTCTGACTTTCGATTTGCTACTTCTGAAAATACATTGGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTCGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 6 4644217-4644540 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050440.1 Tolypothrix sp. PCC 7910 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 4644217 36 100.0 38 .................................... CAGATTTATGGTTGAATGTTGAACCCATTAGCCAGCAG 4644291 36 100.0 36 .................................... TCTGAACAGGACTTAGTGGGATTTGTTGATTTCTTG 4644363 36 100.0 36 .................................... GATTTAGTTGATTTGGTAGAGACTTTTTGTGATTGG 4644435 36 100.0 34 .................................... AATTGTATAATTTGGGGACAAAGGTCAAAACCAA 4644505 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 100.0 36 GTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAA # Left flank : GTAAGGCGGTTTGGTTGTTTATTTTTGGGAGAAAGTGACCAGTTGATTAAATCAATCAAACTTGTCTCCCAAGATTATCTACAGGGGGTGAGACAGTGGGTAATTAGGGATAATCGAGGTTGGTTAACCTTACCCTATTGGGTTGACCATGTGGGGTCAAGAAATACGCGATTTTTAAGGTATCGAATTGAGGAAATTCCAAGTTCACCACCTCCTGATTTGGCGTGGACAATGATTCAATCCCCAATTTGACAAGTATCTCTTATGGTAAAGCGAATTTAGAGTAAAAGAATTGTGGGAAGGCTTACACGGTAAGGGATATGGTAATTGAGGTAAGGAAAAAGGTGCTTGCCATTTTTGGGAAAGTTTATCGACACTGGGTTTGAGGGGCTGAAAGTAAGGGAAGGTTTGCTAAGTTTTGCGTTTTTGGTTTCTCGATTTGGGAGGTACTTGTAAGATTGTAAATGAGCCTTCCTCAGTTAAGGGTTTTCACCTTTGCT # Right flank : ATCTGGATATATTTATTTTTGTGTCACTGTACCAAGGTAAGCGCTAATTGCTGTTGAAGGGTTGCGAAATTCAAAAACCATTAATGTTTTGATAGAAAGTGCCGAGTAGGTTAATTCCTTTTTATCTACCCCAGATGCGTTACAAACTGCCAAATACATCAGAAACCGAATCGATTTCGTACTAGGATGCTTTCTCTGATTGCTGAATTGGTTGAATTGCAAAGTCAAGTTGCGCGATCGCACTTATCAACAATGCGTTTTTGTTCAGCAAGCGGGAGAATAGAAATAAATGTCAAATCAGCTCCCAAAACTTTCAGTATTTCCATTCAATTGTTGATGAATGCGTTAGCGTAATGCGCCGTAGACATCGCACCAGAAAGGAATCACTGTTTGTCCTTAACACAAAGCCTCTAGTGCCGCTTACTTGTAGAACTCTGCTATTTTCAGGGACTGTTCAGGCGATGACAGCCCATCTTTGGCGATTCCTTTGGACGGCGAAG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATTCGTGGCTTGATGCCGTTAGGCGTTGCTCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 7 7182205-7182530 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050440.1 Tolypothrix sp. PCC 7910 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7182205 37 70.3 37 ..........A..CT.CT...AC.TT.C.T....... TCAAATTTAATTAATTGATTAATTGACTAACTCCACT 7182279 37 94.6 37 ....A....................A........... ATCTCATTTTTGGTGCAAATTCGACATACTGAATATA 7182353 37 97.3 33 ..................A.................. TTTTCAAATTCTGGGGAAACTTATTAATATCTC 7182423 37 100.0 34 ..................................... CCAAATCAGTAATCTACAAAGTTCGCTCATGATC 7182494 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 92.4 36 CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAAC # Left flank : CTTTTTACACCAAGTCCAACCAGGAGGTGCTGATAAATCTTACGGTATTGAAGCGGGAAGACTGGCGGGTTTACCAGCTGTGGTGATTCAACGAGCCAAACAAGTCATGGGGCAAATCGAAAAGCACAGTAAAATTGCGATGGGTTTACAAAATCTTGATTAGAAATTGTACATTAACTAATTATTTGTCACTGTTAACAGATTAATGTCATTTTTAACTAATTAATGTCTATATTAACAAATTTTATGTCTTCAAATTGCGTTATACTATTTCTCTAAAATCTGACGACACATTAATCTCCGCGTCTCCTTCTTTCCGCGTTACCGCGTCCCGATCTGTTGCTTCCATTTGGAGGATTGGTATTAGTTAACTATTAATAAAATAGTATTATTAAACTCTTCAGCTTGATGTGTTATGTCATGTATAAACCTTGGCGCACTATAACACAGCTTTTAAAAAGCATGTTGGGTTTAACTTTTCTATTCTCAATTTGCCCCAT # Right flank : CACCAGCGCCTCAAATCCTTCACTAGCAACGACTCCAGAAGCATTTTTGTCAGATTTGTCAAAATCGCCTGCCACTTAACACTTGAAAAAGTAAATTAACTGACATAATAAAAGCTACAAGCCTTAATTAATAAGCGATTTGAAGTTTTGGCACAGACTCAGGGAAATTGACCCCGCTTCGATTCGCCAAAAAATAATTAAGGTGGGTTCCTCCTTGGTCGGAGGTGATTGGGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTATCCCAAGGGATAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAGACTGTCTTCCAACAGCCAAACTAACCCACATTTACACAGTACAGAGGCTTTATACAAGCATGAACTGCGGCGCTATTTATTAATACTTATTCTATTTTCAAGGTTCGGTGTTTTGTCAATCAGATTTTTTGGCGGTCATGGTAAGCAGCGATCGCTAAT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:0, 3:3, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 8 7873337-7872932 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050440.1 Tolypothrix sp. PCC 7910 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 7873336 37 91.9 36 A.C...................T.............. TTGCATGGATAGGTAGAAACACTGAACTAAGGCTAT 7873263 37 100.0 35 ..................................... ATGTCACTTCTTGCTATACTTACGCTTCCAAGCCC 7873191 37 100.0 32 ..................................... TCCTCTAGTAGTGGTTCAACGCTCAACCATCG 7873122 37 100.0 41 ..................................... TCTTTATTATCTTTATCCCACTGCCCCCGGCGCATTAAATT 7873044 37 100.0 39 ..................................... TTCTAGGATAGAAAAAGGGGCAGTTATGCCGGAATATAA 7872968 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 6 37 98.6 37 CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAAC # Left flank : AGTGGATAGAGCAACAGATTCCGGTTCTGTGGGTCGGGGGTTCAAATCCCTCCGCGCTCGTTATATTGTTGTACATTAACTAATTATTTGTCACTGTTAACAGATTCATGTCATTTTTAACAAATTCATGTCACTGTTAACAAATTAATTTCACAGGTTTATACTGCTATATCTTAAAGTATGGCAGCAATATGCTTTTGCAGAGCAACTAATCACCGATAAGATTAGTCAATATTAGGGACACAGGTCAGTCCCTCAAAATCAAGAATCTGTTGCTCTATCCTTTCAACCCACCTAAAAAGTGTTTTCTTGTTGGTTTCAAATACTATTGATGGAATCCTAAAATCCTCTTTCTATCTAAAATTTTTATTAGCTCTATCAGCAAGGTTGGTTGAAATTGAAAAATTGCCTGTGTCTTGTTGTCATATCTTCTGCCAACCTACCTTTAAGCAAAGGTATTGAAAATCTAGACGAACATCCCAAAAACGCTATAAGCACAA # Right flank : TCCAGCGCCTCAAATCCTTCACTAGCAACGACTCCAGAAGCATTTTTGTCAGATCTGCCAAAATCGCCTGTCACTTAACACTTGAAAAAGTAAATTAACTGACACTATAAAAGCTACAAGCCTTAATCAATAAGCGATTTGAAGTTTTGGCAGATACCTGGGGAAATTGACCCCGCTTCGATTCGCCAAAAAATAATTAAGGTGGGTTCCTCCTTGGTCGGAGGTGATTGGGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTATCCACAAGGGATAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAGACTATCTTCCAACAGTCAAACTAACCCACATTTTCACAGTACAGCGGCTTTATACAAGCATGAACTGCGGCGCTATTAATGATACTTATTCTATTTTCAAGGTTCGGTGTTTTGTCAATCAGCTTTTTTGGCGGGAATGGTAAGCAGCGATCGCTAATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA //